|
project.tests.test_core.BcFormTestCase |
test_clean |
project/tests/test_core.py |
697 |
Pass |
0.004 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_main.CliTestCase |
test_cli |
project/tests/test_main.py |
18 |
Pass |
0.018 |
Result type | |
Message | |
Details | |
Standard output | usage: bcforms [-h] [-d] [-q] [-v]
{get-charge,get-molwt,get-formula,validate} ...
bcforms
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{get-charge,get-molwt,get-formula,validate}
get-charge Calculate the total charge of a BcForm
get-molwt Calculate the molecular weight of a BcForm
get-formula Calculate the chemical formula of a BcForm
validate Validate a biocomplex form
|
Standard error | |
|
|
project.tests.test_core.MiscellaneousTestCase |
test_draw_xlink |
project/tests/test_core.py |
975 |
Pass |
1.251 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_equal |
project/tests/test_core.py |
100 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_export |
project/tests/test_core.py |
182 |
Pass |
0.120 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_export |
project/tests/test_core.py |
940 |
Pass |
0.237 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_from_set |
project/tests/test_core.py |
680 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_from_str |
project/tests/test_core.py |
561 |
Pass |
1.215 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_rest.RestTestCase |
test_get_bcform_properties |
project/tests/test_rest.py |
21 |
Pass |
2.027 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_rest.RestTestCase |
test_get_bcform_properties_... |
project/tests/test_rest.py |
317 |
Pass |
0.148 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_get_charge |
project/tests/test_core.py |
145 |
Pass |
0.135 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_get_charge |
project/tests/test_core.py |
767 |
Pass |
0.232 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_main.CliTestCase |
test_get_charge |
project/tests/test_main.py |
141 |
Pass |
0.345 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_rest.RestTestCase |
test_get_crosslinks |
project/tests/test_rest.py |
460 |
Pass |
0.009 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_get_formula |
project/tests/test_core.py |
113 |
Pass |
0.191 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_get_formula |
project/tests/test_core.py |
711 |
Pass |
1.100 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_main.CliTestCase |
test_get_formula |
project/tests/test_main.py |
71 |
Pass |
0.689 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_get_genomic_image |
project/tests/test_core.py |
947 |
Pass |
0.634 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_get_l_bond_atoms |
project/tests/test_core.py |
471 |
Pass |
0.006 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_get_l_displaced_atoms |
project/tests/test_core.py |
491 |
Pass |
0.006 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_get_mol_wt |
project/tests/test_core.py |
129 |
Pass |
0.138 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_get_mol_wt |
project/tests/test_core.py |
739 |
Pass |
1.128 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_main.CliTestCase |
test_get_mol_wt |
project/tests/test_main.py |
106 |
Pass |
0.352 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_get_r_bond_atoms |
project/tests/test_core.py |
481 |
Pass |
0.006 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_get_r_displaced_atoms |
project/tests/test_core.py |
501 |
Pass |
0.006 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_get_structure |
project/tests/test_core.py |
161 |
Pass |
0.372 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_get_structure |
project/tests/test_core.py |
889 |
Pass |
1.627 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_get_subunit_attribute |
project/tests/test_core.py |
850 |
Pass |
0.309 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_main.CliTestCase |
test_help |
project/tests/test_main.py |
24 |
Pass |
0.010 |
Result type | |
Message | |
Details | |
Standard output | usage: bcforms [-h] [-d] [-q] [-v]
{get-charge,get-molwt,get-formula,validate} ...
bcforms
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{get-charge,get-molwt,get-formula,validate}
get-charge Calculate the total charge of a BcForm
get-molwt Calculate the molecular weight of a BcForm
get-formula Calculate the chemical formula of a BcForm
validate Validate a biocomplex form
|
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_init |
project/tests/test_core.py |
21 |
Pass |
0.112 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_init |
project/tests/test_core.py |
188 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_init |
project/tests/test_core.py |
273 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_init |
project/tests/test_core.py |
381 |
Pass |
0.006 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_init |
project/tests/test_core.py |
513 |
Pass |
0.004 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_is_equal |
project/tests/test_core.py |
256 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_is_equal |
project/tests/test_core.py |
342 |
Pass |
0.179 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_is_equal |
project/tests/test_core.py |
455 |
Pass |
0.011 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_is_equal |
project/tests/test_core.py |
816 |
Pass |
0.115 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_examples.ExamplesTestCase |
test_jupyter |
project/tests/test_examples.py |
39 |
Skipped |
0.002 |
Result type | pytest.skip |
Message | Jupyter server not setup in CircleCI |
Details | project/tests/test_examples.py:39: Jupyter server not setup in CircleCI |
Standard output | |
Standard error | |
|
|
project.tests.test_rest.RestTestCase |
test_PrefixMiddleware |
project/tests/test_rest.py |
17 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_set_charge |
project/tests/test_core.py |
86 |
Pass |
0.112 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_set_charge |
project/tests/test_core.py |
236 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_set_component_type |
project/tests/test_core.py |
243 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_set_crosslinks |
project/tests/test_core.py |
530 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_set_element |
project/tests/test_core.py |
214 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_set_formula |
project/tests/test_core.py |
62 |
Pass |
0.175 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_set_id |
project/tests/test_core.py |
35 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_set_l_bond_atoms |
project/tests/test_core.py |
286 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_set_l_displaced_atoms |
project/tests/test_core.py |
300 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_set_l_monomer |
project/tests/test_core.py |
418 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_set_l_subunit |
project/tests/test_core.py |
402 |
Pass |
0.004 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_set_l_subunit_idx |
project/tests/test_core.py |
409 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_set_mol_wt |
project/tests/test_core.py |
73 |
Pass |
0.053 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_set_monomer |
project/tests/test_core.py |
228 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_set_order |
project/tests/test_core.py |
314 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_set_position |
project/tests/test_core.py |
220 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_set_r_bond_atoms |
project/tests/test_core.py |
293 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_set_r_displaced_atoms |
project/tests/test_core.py |
307 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_set_r_monomer |
project/tests/test_core.py |
441 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_set_r_subunit |
project/tests/test_core.py |
425 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_set_r_subunit_idx |
project/tests/test_core.py |
432 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_set_stereo |
project/tests/test_core.py |
320 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_set_stoichiometry |
project/tests/test_core.py |
42 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_set_structure |
project/tests/test_core.py |
49 |
Pass |
0.121 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_set_subunit |
project/tests/test_core.py |
202 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_set_subunits |
project/tests/test_core.py |
522 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_set_subunit_attribute |
project/tests/test_core.py |
866 |
Pass |
0.163 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_set_subunit_idx |
project/tests/test_core.py |
208 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_set_type |
project/tests/test_core.py |
395 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.SubunitTestCase |
test_str |
project/tests/test_core.py |
96 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.AtomTestCase |
test_str |
project/tests/test_core.py |
250 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.InlineCrosslinkTestCase |
test_str |
project/tests/test_core.py |
327 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.OntologyCrosslinkTestCase |
test_str |
project/tests/test_core.py |
448 |
Pass |
0.005 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_str |
project/tests/test_core.py |
539 |
Pass |
0.024 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.BcFormTestCase |
test_validate |
project/tests/test_core.py |
795 |
Pass |
0.067 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_main.CliTestCase |
test_validate |
project/tests/test_main.py |
44 |
Pass |
0.241 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_main.CliTestCase |
test_version |
project/tests/test_main.py |
29 |
Pass |
0.188 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|