KarrLab / datanator / #2690 / 3.7.6

Info

Statistics

  • Test classes: 62
  • Test cases: 242
  • Pass rate (%): 100.0
  • Time (s): 356.22

Test cases

Class Case File Line Result Time (s)
tests.util.test_molecule_util.TestInchiMolecule test tests/util/test_molecule_ut... 79 Pass 0.003
tests.util.test_rna_seq_util.TestKallisto test tests/util/test_rna_seq_uti... 26 Pass 1.498
tests.test_main_cli.HelpTestCase test tests/test_main_cli.py 300 Skipped 0.001
tests.core.test_data_model.TestConsensusMethod test tests/core/test_data_model.py 19 Pass 0.001
tests.core.test_data_model.TestConsensus test tests/core/test_data_model.py 26 Pass 0.002
tests.core.test_data_model.TestEvidence test tests/core/test_data_model.py 44 Pass 0.001
tests.core.test_data_model.TestPolymerSpecie test tests/core/test_data_model.py 146 Pass 0.002
tests.core.test_data_model.TestGenetics test tests/core/test_data_model.py 333 Pass 0.001
tests.core.test_data_model.TestResourceAssignme... test tests/core/test_data_model.py 345 Pass 0.001
tests.util.test_file_util.TestFileUtil test_access_dict_by_index tests/util/test_file_util.py 56 Pass 0.002
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_add_inchi_hash tests/data_source/test_sabi... 335 Skipped 0.342
tests.schema_2.test_transform_metabolite_concen... test_build_conc_obs tests/schema_2/test_transfo... 1210 Skipped 0.013
tests.test_main_cli.TestBuildController test_build_corum tests/test_main_cli.py 55 Skipped 0.001
tests.test_main_cli.TestBuildController test_build_ecmdb tests/test_main_cli.py 80 Skipped 0.001
tests.schema_2.test_transform_metabolites_meta.... test_build_entity tests/schema_2/test_transfo... 664 Skipped 0.012
tests.test_main_cli.TestBuildController test_build_intact tests/test_main_cli.py 61 Skipped 0.001
tests.test_main_cli.TestBuildController test_build_jaspar tests/test_main_cli.py 74 Skipped 0.001
tests.schema_2.test_transform_metabolites_meta.... test_build_obs tests/schema_2/test_transfo... 669 Skipped 0.002
tests.test_main_cli.TestBuildController test_build_pax tests/test_main_cli.py 86 Skipped 0.001
tests.schema_2.test_transform.TestTransform test_build_rna_modification... tests/schema_2/test_transfo... 788 Skipped 0.011
tests.schema_2.test_transform.TestTransform test_build_rna_modification... tests/schema_2/test_transfo... 1550 Skipped 0.001
tests.schema_2.test_transform.TestTransform test_build_rna_observation tests/schema_2/test_transfo... 514 Skipped 0.001
tests.test_main_cli.TestBuildController test_build_sabio tests/test_main_cli.py 67 Skipped 0.001
tests.schema_2.test_transform.TestTransform test_build_uniprot_entity tests/schema_2/test_transfo... 31 Skipped 0.001
tests.schema_2.test_transform.TestTransform test_build_uniprot_obs tests/schema_2/test_transfo... 272 Skipped 0.006
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_calc_enzyme_molecular_... tests/data_source/test_sabi... 310 Pass 0.979
tests.data_source.test_sabio_rk.TestDownloader test_calc_inchi_formula_con... tests/data_source/test_sabi... 795 Pass 0.059
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_calc_inchi_formula_con... tests/data_source/test_sabi... 271 Pass 0.003
tests.util.test_reaction_util.TestReaction test_calc_reactant_product_... tests/util/test_reaction_ut... 45 Pass 0.013
tests.data_source.brenda.test_reaction.TestBren... test_clean_up tests/data_source/brenda/te... 32 Pass 0.795
tests.elasticsearch_kl.test_batch_load.TestMong... test_connection tests/elasticsearch_kl/test... 30 Pass 0.195
tests.util.test_mongo_util.TestMongoUtil test_con_db tests/util/test_mongo_util.py 37 Pass 0.039
tests.data_source.test_corum_nosql.TestCorumNoSQL test_correct_protein_name_list tests/data_source/test_coru... 65 Pass 0.017
tests.test_main_cli.DbControllerTestCase test_create tests/test_main_cli.py 339 Skipped 0.001
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_create_cross_reference... tests/data_source/test_sabi... 49 Pass 0.002
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_create_kinetic_laws_fr... tests/data_source/test_sabi... 116 Pass 2.209
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_create_kinetic_law_fro... tests/data_source/test_sabi... 83 Pass 1.830
tests.data_source.test_sabio_reaction.TestProte... test_create_reactants tests/data_source/test_sabi... 43 Pass 0.054
tests.test_main_cli.DbControllerTestCase test_create_table_only tests/test_main_cli.py 345 Skipped 0.001
tests.elasticsearch_kl.test_batch_load.TestMong... test_data_from_metabolite tests/elasticsearch_kl/test... 40 Pass 0.685
tests.elasticsearch_kl.test_batch_load.TestMong... test_data_from_metabolites_... tests/elasticsearch_kl/test... 46 Pass 0.002
tests.elasticsearch_kl.test_batch_load.TestMong... test_data_from_mongo tests/elasticsearch_kl/test... 35 Pass 10.786
tests.util.test_warning_util.TestWarningUtil test_disable_warnings_openb... tests/util/test_warning_uti... 24 Pass 0.268
tests.util.test_warning_util.TestWarningUtil test_disable_warnings_urllib3 tests/util/test_warning_uti... 30 Skipped 0.002
tests.util.test_file_util.TestFileUtil test_distance_to_common tests/util/test_file_util.py 77 Pass 0.002
tests.data_source.brenda.test_reaction.TestBren... test_download_and_read tests/data_source/brenda/te... 28 Pass 0.231
tests.test_main_cli.TestDownloadController test_download_array_express tests/test_main_cli.py 140 Skipped 0.001
tests.data_source.test_intact_nosql.TestCorumNoSQL test_download_content tests/data_source/test_inta... 31 Pass 24.781
tests.test_main_cli.TestDownloadController test_download_corum tests/test_main_cli.py 104 Skipped 0.002
tests.data_source.test_taxon_tree.TestTaxonTree test_download_dump tests/data_source/test_taxo... 33 Pass 7.742
tests.test_main_cli.TestDownloadController test_download_ecmdb tests/test_main_cli.py 128 Skipped 0.001
tests.data_source.test_sabio_rk.TestAll test_download_full_database tests/data_source/test_sabi... 877 Skipped 0.002
tests.test_main_cli.TestDownloadController test_download_intact tests/test_main_cli.py 110 Skipped 0.001
tests.test_main_cli.TestDownloadController test_download_jaspar tests/test_main_cli.py 122 Skipped 0.001
tests.data_source.test_kegg_orthology.TestKeggO... test_download_ko tests/data_source/test_kegg... 78 Skipped 0.027
tests.test_main_cli.TestDownloadController test_download_pax tests/test_main_cli.py 134 Skipped 0.001
tests.data_source.test_kegg_reaction_class.Test... test_download_rxn_cls tests/data_source/test_kegg... 80 Pass 0.565
tests.test_main_cli.TestDownloadController test_download_sabio tests/test_main_cli.py 116 Skipped 0.001
tests.test_main_cli.TestDownloadController test_download_uniprot tests/test_main_cli.py 146 Skipped 0.001
tests.data_source.rna_halflife.test_doi_10_1186... test_download_xlsx tests/data_source/rna_halfl... 36 Pass 6.338
tests.test_main_cli.DbControllerTestCase test_drop tests/test_main_cli.py 362 Skipped 0.001
tests.util.test_warning_util.TestWarningUtil test_enable_warnings_openbabel tests/util/test_warning_uti... 18 Pass 0.282
tests.data_source.test_sabio_rk.TestDownloader test_enzyme_parameter tests/data_source/test_sabi... 737 Pass 2.841
tests.util.test_rna_seq_util.TestKallisto test_error tests/util/test_rna_seq_uti... 53 Pass 0.442
tests.data_source.test_ec.TestEC test_establish_ftp tests/data_source/test_ec.py 27 Skipped 0.053
tests.util.test_file_util.TestFileUtil test_exists_key_value_pair tests/util/test_file_util.py 124 Pass 0.002
tests.data_source.test_sabio_rk.TestStats test_export_stats tests/data_source/test_sabi... 853 Pass 0.344
tests.data_source.test_sabio_reaction.TestProte... test_extract_enzyme_names tests/data_source/test_sabi... 64 Pass 0.007
tests.data_source.test_sabio_reaction.TestProte... test_extract_reactant_names tests/data_source/test_sabi... 51 Pass 0.004
tests.util.test_file_util.TestFileUtil test_extract_values tests/util/test_file_util.py 32 Pass 0.001
tests.data_source.rna_halflife.test_order_by_ko... test_fill_cell tests/data_source/rna_halfl... 35 Skipped 0.043
tests.data_source.test_sabio_reaction.TestProte... test_fill_collection tests/data_source/test_sabi... 48 Pass 0.025
tests.util.test_mongo_util.TestMongoUtil test_fill_db tests/util/test_mongo_util.py 40 Skipped 0.003
tests.data_source.rna_halflife.test_order_by_ko... test_fill_gb_2012 tests/data_source/rna_halfl... 55 Skipped 0.002
tests.data_source.rna_halflife.test_doi_10_1186... test_fill_gene_protein_name tests/data_source/rna_halfl... 48 Pass 0.155
tests.data_source.rna_halflife.test_order_by_ko... test_fill_gr_131 tests/data_source/rna_halfl... 51 Skipped 0.003
tests.data_source.rna_halflife.test_order_by_ko... test_fill_journal_pone tests/data_source/rna_halfl... 63 Skipped 0.004
tests.data_source.rna_halflife.test_order_by_ko... test_fill_mbc tests/data_source/rna_halfl... 39 Skipped 0.002
tests.data_source.rna_halflife.test_order_by_ko... test_fill_nar_gks tests/data_source/rna_halfl... 43 Skipped 0.003
tests.data_source.rna_halflife.test_order_by_ko... test_fill_nar_gkt tests/data_source/rna_halfl... 47 Skipped 0.003
tests.data_source.rna_halflife.test_doi_10_1186... test_fill_protein_name tests/data_source/rna_halfl... 54 Pass 0.017
tests.data_source.rna_halflife.test_doi_10_1038... test_fill_rna_halflife tests/data_source/rna_halfl... 36 Pass 0.886
tests.data_source.rna_halflife.test_doi_10_1093... test_fill_rna_halflife tests/data_source/rna_halfl... 42 Pass 0.425
tests.data_source.rna_halflife.test_doi_10_1101... test_fill_rna_halflife tests/data_source/rna_halfl... 42 Pass 30.393
tests.data_source.rna_halflife.test_doi_10_1371... test_fill_rna_halflife tests/data_source/rna_halfl... 36 Skipped 0.299
tests.data_source.rna_halflife.test_doi_10_1093... test_fill_rna_half_life tests/data_source/rna_halfl... 38 Skipped 0.223
tests.data_source.rna_halflife.test_doi_10_1186... test_fill_rna_half_life tests/data_source/rna_halfl... 40 Pass 7.249
tests.data_source.rna_halflife.test_order_by_ko... test_fill_s12864 tests/data_source/rna_halfl... 59 Skipped 0.002
tests.data_source.test_uniprot_nosql.TestUnipro... test_fill_species_name tests/data_source/test_unip... 32 Pass 0.264
tests.data_source.rna_halflife.test_doi_10_1093... test_fill_uniprot tests/data_source/rna_halfl... 36 Skipped 0.061
tests.data_source.rna_halflife.test_doi_10_1101... test_fill_uniprot tests/data_source/rna_halfl... 36 Skipped 0.083
tests.data_source.rna_halflife.test_doi_10_1186... test_fill_uniprot_by_oln tests/data_source/rna_halfl... 62 Pass 0.538
tests.util.test_rna_halflife_util.TestRnaHlUtil test_fill_uniprot_by_oln tests/util/test_rna_halflif... 35 Skipped 0.153
tests.util.test_rna_halflife_util.TestRnaHlUtil test_fill_uniprot_with_df tests/util/test_rna_halflif... 50 Pass 0.003
tests.data_source.metabolite_concentration.test... test_flatten_conc_obj tests/data_source/metabolit... 24 Pass 0.014
tests.util.test_file_util.TestFileUtil test_flatten_json tests/util/test_file_util.py 19 Pass 0.001
tests.data_source.test_sabio_rk.TestDownloader test_full_kinetic_laws tests/data_source/test_sabi... 812 Pass 2.347
tests.test_main_cli.TestWithTempFile test_GenerateTemplateContro... tests/test_main_cli.py 180 Skipped 0.001
tests.test_main_cli.TestWithTempFile test_GetDataController tests/test_main_cli.py 162 Skipped 0.001
tests.data_source.metabolite_concentration.test... test_get_canon_ancestors tests/data_source/metabolit... 21 Pass 0.070
tests.util.test_taxonomy_util.TestTaxonomyUtil test_get_distance_to_common... tests/util/test_taxonomy_ut... 129 Pass 0.094
tests.util.test_taxonomy_util.TestTaxonomyUtil test_get_distance_to_root tests/util/test_taxonomy_ut... 162 Pass 0.006
tests.test_main_cli.TestWithoutTempFile test_get_ec_number tests/test_main_cli.py 268 Skipped 0.001
tests.core.test_data_model.TestReaction test_get_ec_number tests/core/test_data_model.py 276 Pass 0.002
tests.util.test_molecule_util.TestMolecule test_get_fingerprint tests/util/test_molecule_ut... 67 Pass 0.016
tests.util.test_molecule_util.TestMolecule test_get_fingerprint_types tests/util/test_molecule_ut... 60 Pass 0.003
tests.util.test_molecule_util.TestInchiMolecule test_get_formula_and_connec... tests/util/test_molecule_ut... 182 Pass 0.002
tests.data_source.test_sabio_reaction.TestProte... test_get_id tests/data_source/test_sabi... 38 Pass 0.009
tests.util.test_taxonomy_util.TestTaxonomyUtil test_get_max_distance_to_co... tests/util/test_taxonomy_ut... 169 Pass 0.005
tests.data_source.test_kegg_org_code.TestKeggOr... test_get_ncbi_id tests/data_source/test_kegg... 44 Pass 20.341
tests.data_source.test_kegg_org_code.TestKeggOr... test_get_ncbi_id_rest tests/data_source/test_kegg... 39 Skipped 0.001
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_get_parameter_by_prope... tests/data_source/test_sabi... 157 Pass 0.002
tests.core.test_data_model.TestReaction test_get_products tests/core/test_data_model.py 259 Pass 0.002
tests.core.test_data_model.TestReaction test_get_reactants tests/core/test_data_model.py 255 Pass 0.002
tests.core.test_data_model.TestReaction test_get_reactant_product_p... tests/core/test_data_model.py 263 Pass 0.002
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_get_specie_from_sbml tests/data_source/test_sabi... 62 Pass 0.002
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_get_specie_reference_f... tests/data_source/test_sabi... 71 Pass 0.127
tests.util.test_calc_tanimoto.TestCalcTanimoto test_get_tanimoto tests/util/test_calc_tanimo... 29 Pass 0.049
tests.util.test_file_util.TestFileUtil test_get_val_from_dict_list tests/util/test_file_util.py 42 Pass 0.001
tests.test_main_cli.BaseControllerTestCase test_get_version tests/test_main_cli.py 29 Skipped 0.002
tests.util.test_chem_util.TestChemUtil test_hash_inchi tests/util/test_chem_util.py 24 Pass 0.003
tests.data_source.rna_halflife.test_order_by_ko... test_helper tests/data_source/rna_halfl... 30 Pass 0.069
tests.core.test_data_model.TestReaction test_id tests/core/test_data_model.py 195 Pass 0.001
tests.util.test_index_collection.TestMongoUtil test_index_corum tests/util/test_index_colle... 28 Skipped 0.051
tests.util.test_index_collection.TestMongoUtil test_index_sabio tests/util/test_index_colle... 36 Skipped 0.002
tests.util.test_index_collection.TestMongoUtil test_index_uniprot tests/util/test_index_colle... 44 Skipped 0.005
tests.data_source.test_sabio_rk.TestDownloader test_infer_compound_structu... tests/data_source/test_sabi... 754 Pass 0.856
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_infer_compound_structu... tests/data_source/test_sabi... 189 Pass 1.642
tests.util.test_molecule_util.TestMolecule test_init tests/util/test_molecule_ut... 36 Pass 0.397
tests.core.test_data_model.TestReaction test_init tests/core/test_data_model.py 191 Pass 0.002
tests.core.test_data_model.TestResource test_init tests/core/test_data_model.py 352 Pass 0.001
tests.util.test_molecule_util.TestInchiMolecule test_is_equal tests/util/test_molecule_ut... 137 Pass 0.002
tests.util.test_molecule_util.TestInchiMolecule test_is_protonation_isomer tests/util/test_molecule_ut... 174 Pass 0.002
tests.util.test_molecule_util.TestInchiMolecule test_is_stereoisomer tests/util/test_molecule_ut... 154 Pass 0.002
tests.util.test_molecule_util.TestInchiMolecule test_is_tautomer tests/util/test_molecule_ut... 166 Pass 0.003
tests.util.test_mongo_util.TestMongoUtil test_list_all_collections tests/util/test_mongo_util.py 32 Pass 0.041
tests.data_source.test_sabio_rk.TestDownloader test_loading_enzymes tests/data_source/test_sabi... 528 Skipped 0.001
tests.data_source.test_protein_aggregate.TestPr... test_loadload_kinlaw_from_s... tests/data_source/test_prot... 73 Skipped 0.248
tests.data_source.test_corum_nosql.TestCorumNoSQL test_load_all_content tests/data_source/test_coru... 47 Skipped 0.001
tests.data_source.test_sabio_rk.TestDownloader test_load_and_update_kineti... tests/data_source/test_sabi... 203 Pass 2.192
tests.data_source.test_intact_nosql.TestCorumNoSQL test_load_complex tests/data_source/test_inta... 37 Pass 5.066
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_load_compounds tests/data_source/test_sabi... 124 Pass 0.578
tests.data_source.test_metabolites_meta_collect... test_load_content tests/data_source/test_meta... 39 Pass 0.477
tests.data_source.test_pax_nosql.TestCorumNoSQL test_load_content tests/data_source/test_pax_... 22 Pass 54.250
tests.data_source.test_sabio_rk.TestDownloader test_load_content tests/data_source/test_sabi... 825 Pass 31.996
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_load_content tests/data_source/test_sabi... 332 Pass 9.768
tests.data_source.test_taxon_tree.TestTaxonTree test_load_content tests/data_source/test_taxo... 85 Pass 11.952
tests.data_source.test_kegg_orthology.TestKeggO... test_load_content tests/data_source/test_kegg... 103 Skipped 0.001
tests.data_source.test_kegg_reaction_class.Test... test_load_content tests/data_source/test_kegg... 114 Skipped 0.001
tests.data_source.test_sabio_rk.TestDownloader test_load_content_commit_in... tests/data_source/test_sabi... 838 Pass 17.539
tests.data_source.brenda.test_reaction.TestBren... test_load_df_real tests/data_source/brenda/te... 54 Pass 0.756
tests.data_source.brenda.test_reaction.TestBren... test_load_df_sim tests/data_source/brenda/te... 47 Pass 0.036
tests.data_source.rna_halflife.test_doi_10_1186... test_load_halflife tests/data_source/rna_halfl... 41 Pass 34.865
tests.data_source.test_intact_nosql.TestCorumNoSQL test_load_interaction tests/data_source/test_inta... 48 Pass 1.033
tests.data_source.test_sabio_rk.TestDownloader test_load_kinetic_laws_and_... tests/data_source/test_sabi... 49 Pass 1.493
tests.data_source.test_sabio_rk.TestDownloader test_load_kinetic_laws_chec... tests/data_source/test_sabi... 608 Pass 2.310
tests.data_source.test_sabio_rk.TestDownloader test_load_kinetic_laws_modi... tests/data_source/test_sabi... 422 Pass 0.703
tests.data_source.test_sabio_rk.TestDownloader test_load_kinetic_laws_mult... tests/data_source/test_sabi... 376 Pass 3.988
tests.data_source.test_sabio_rk.TestDownloader test_load_kinetic_laws_with... tests/data_source/test_sabi... 452 Pass 0.956
tests.data_source.test_sabio_rk.TestDownloader test_load_kinetic_laws_with... tests/data_source/test_sabi... 431 Pass 1.301
tests.data_source.test_sabio_rk.TestDownloader test_load_kinetic_law_ids tests/data_source/test_sabi... 42 Pass 8.002
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_load_kinetic_law_ids tests/data_source/test_sabi... 42 Skipped 0.001
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_load_missing_enzyme_in... tests/data_source/test_sabi... 299 Skipped 0.002
tests.data_source.test_sabio_rk.TestDownloader test_load_missing_kinetic_l... tests/data_source/test_sabi... 665 Pass 2.435
tests.data_source.test_sabio_rk.TestDownloader test_load_missing_kinetic_l... tests/data_source/test_sabi... 683 Pass 1.940
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_load_missing_kinetic_l... tests/data_source/test_sabi... 169 Pass 1.136
tests.data_source.test_corum_nosql.TestCorumNoSQL test_load_some_content tests/data_source/test_coru... 36 Pass 1.612
tests.data_source.rna_halflife.test_doi_10_1186... test_load_uniprot tests/data_source/rna_halfl... 36 Skipped 0.068
tests.data_source.test_kegg_org_code.TestKeggOr... test_make_bulk tests/data_source/test_kegg... 33 Skipped 0.001
tests.util.test_rna_halflife_util.TestRnaHlUtil test_make_df tests/util/test_rna_halflif... 39 Skipped 0.108
tests.util.test_file_util.TestFileUtil test_make_dict tests/util/test_file_util.py 97 Pass 0.001
tests.data_source.test_ec.TestEC test_make_doc tests/data_source/test_ec.py 43 Pass 0.002
tests.util.test_calc_tanimoto.TestCalcTanimoto test_many_to_many tests/util/test_calc_tanimo... 51 Skipped 0.002
tests.util.test_file_util.TestFileUtil test_merge_dict tests/util/test_file_util.py 119 Pass 0.001
tests.test_main_cli.DbControllerTestCase test_migrate tests/test_main_cli.py 353 Skipped 0.001
tests.test_main_cli.TestWithoutTempFile test_molecule_convert_struc... tests/test_main_cli.py 262 Skipped 0.001
tests.test_main_cli.TestWithoutTempFile test_molecule_get_structure tests/test_main_cli.py 240 Skipped 0.001
tests.util.test_chem_util.TestChemUtil test_morphineInChIKey tests/util/test_chem_util.py 30 Pass 0.002
tests.core.test_data_model.TestReaction test_name tests/core/test_data_model.py 199 Pass 0.001
tests.core.test_data_model.TestReaction test_normalize tests/core/test_data_model.py 203 Pass 0.002
tests.data_source.test_sabio_rk.TestDownloader test_normalize_parameter_value tests/data_source/test_sabi... 701 Pass 0.057
tests.core.test_data_model.TestObservedResultMe... test_ObservedResultMetadata tests/core/test_data_model.py 56 Pass 0.002
tests.util.test_calc_tanimoto.TestCalcTanimoto test_one_to_many tests/util/test_calc_tanimo... 38 Skipped 0.019
tests.data_source.test_sabio_rk.TestDownloader test_parse_complex_subunit_... tests/data_source/test_sabi... 470 Pass 0.112
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_parse_complex_subunit_... tests/data_source/test_sabi... 288 Pass 0.316
tests.data_source.test_ec.TestEC test_parse_content tests/data_source/test_ec.py 38 Skipped 0.002
tests.data_source.test_kegg_orthology.TestKeggO... test_parse_definition tests/data_source/test_kegg... 112 Skipped 0.001
tests.data_source.test_taxon_tree.TestTaxonTree test_parse_division tests/data_source/test_taxo... 74 Pass 0.019
tests.schema_2.test_transform.TestTransform test_parse_docs tests/schema_2/test_transfo... 27 Pass 4.464
tests.data_source.test_sabio_rk_nosql.TestSabioRk test_parse_enzyme_name tests/data_source/test_sabi... 56 Pass 0.044
tests.data_source.test_taxon_tree.TestTaxonTree test_parse_fullname_line tests/data_source/test_taxo... 40 Pass 0.002
tests.data_source.test_taxon_tree.TestTaxonTree test_parse_fullname_taxid tests/data_source/test_taxo... 61 Pass 1.874
tests.data_source.test_taxon_tree.TestTaxonTree test_parse_gencode tests/data_source/test_taxo... 82 Pass 0.019
tests.data_source.test_kegg_orthology.TestKeggO... test_parse_gene tests/data_source/test_kegg... 143 Pass 0.012
tests.data_source.test_gene_ortholog.TestKeggOr... test_parse_gene_info tests/data_source/test_gene... 44 Pass 0.636
tests.data_source.test_gene_ortholog.TestKeggOr... test_parse_html tests/data_source/test_gene... 26 Skipped 0.003
tests.data_source.test_kegg_org_code.TestKeggOr... test_parse_html_iter tests/data_source/test_kegg... 25 Skipped 0.077
tests.data_source.test_kegg_orthology.TestKeggO... test_parse_ko_txt tests/data_source/test_kegg... 85 Skipped 0.002
tests.data_source.test_corum_nosql.TestCorumNoSQL test_parse_list tests/data_source/test_coru... 59 Pass 0.013
tests.data_source.test_taxon_tree.TestTaxonTree test_parse_names tests/data_source/test_taxo... 78 Pass 1.544
tests.data_source.test_taxon_tree.TestTaxonTree test_parse_nodes tests/data_source/test_taxo... 67 Pass 1.084
tests.data_source.test_kegg_orthology.TestKeggO... test_parse_pathway_disease tests/data_source/test_kegg... 120 Pass 0.005
tests.data_source.test_kegg_reaction_class.Test... test_parse_rc_multiline tests/data_source/test_kegg... 93 Pass 0.001
tests.data_source.test_kegg_reaction_class.Test... test_parse_rc_orthology tests/data_source/test_kegg... 102 Pass 0.001
tests.data_source.brenda.test_reaction.TestBren... test_parse_reaction tests/data_source/brenda/te... 39 Pass 0.037
tests.data_source.test_kegg_reaction_class.Test... test_parse_root_json tests/data_source/test_kegg... 87 Pass 3.715
tests.data_source.test_corum_nosql.TestCorumNoSQL test_parse_subunits tests/data_source/test_coru... 119 Pass 0.013
tests.data_source.test_taxon_tree.TestTaxonTree test_parse_taxid_line tests/data_source/test_taxo... 55 Pass 0.209
tests.util.test_mongo_util.TestMongoUtil test_print_schema tests/util/test_mongo_util.py 48 Pass 0.067
tests.schema_2.test_transform_metabolite_concen... test_process_docs tests/schema_2/test_transfo... 1216 Pass 12.718
tests.schema_2.test_transform_metabolites_meta.... test_process_docs tests/schema_2/test_transfo... 660 Skipped 0.001
tests.data_source.test_uniprot_nosql.TestUnipro... test_proper_loading tests/data_source/test_unip... 26 Pass 0.582
tests.util.test_molecule_util.TestInchiMolecule test_remove_layer tests/util/test_molecule_ut... 132 Pass 0.003
tests.util.test_file_util.TestFileUtil test_replace_dict_key tests/util/test_file_util.py 62 Pass 0.001
tests.data_source.test_metabolites_meta_collect... test_replace_key_in_similar... tests/data_source/test_meta... 46 Pass 0.149
tests.util.test_file_util.TestFileUtil test_replace_list_dict_key tests/util/test_file_util.py 68 Pass 0.002
tests.test_main_cli.DbControllerTestCase test_restore tests/test_main_cli.py 371 Skipped 0.001
tests.data_source.test_ec.TestEC test_retrieve_content tests/data_source/test_ec.py 32 Skipped 0.032
tests.util.test_file_util.TestFileUtil test_search_dict_list tests/util/test_file_util.py 104 Pass 0.001
tests.util.test_taxonomy_util.TestTaxonomyUtil test_setup_database tests/util/test_taxonomy_ut... 16 Pass 0.732
tests.util.test_chem_util.TestChemUtil test_simplify_inchi tests/util/test_chem_util.py 18 Pass 0.011
tests.test_main_cli.TestWithoutTempFile test_taxonomy_get_common_an... tests/test_main_cli.py 212 Skipped 0.001
tests.test_main_cli.TestWithoutTempFile test_taxonomy_get_distance_... tests/test_main_cli.py 222 Skipped 0.001
tests.test_main_cli.TestWithoutTempFile test_taxonomy_get_distance_... tests/test_main_cli.py 231 Skipped 0.001
tests.test_main_cli.TestWithoutTempFile test_taxonomy_get_parents tests/test_main_cli.py 203 Skipped 0.001
tests.test_main_cli.TestWithoutTempFile test_taxonomy_get_rank tests/test_main_cli.py 189 Skipped 0.001
tests.util.test_taxonomy_util.TestTaxonomyUtil test_Taxon_get_common_ancestor tests/util/test_taxonomy_ut... 104 Pass 0.099
tests.util.test_taxonomy_util.TestTaxonomyUtil test_Taxon_get_ncbi_id tests/util/test_taxonomy_ut... 77 Pass 0.005
tests.util.test_taxonomy_util.TestTaxonomyUtil test_Taxon_get_parent_taxa tests/util/test_taxonomy_ut... 84 Pass 0.017
tests.util.test_taxonomy_util.TestTaxonomyUtil test_Taxon_get_rank tests/util/test_taxonomy_ut... 99 Pass 0.005
tests.util.test_taxonomy_util.TestTaxonomyUtil test_Taxon_init_from_id tests/util/test_taxonomy_ut... 56 Pass 0.009
tests.util.test_taxonomy_util.TestTaxonomyUtil test_Taxon_init_from_name tests/util/test_taxonomy_ut... 19 Pass 0.005
tests.core.test_data_model.TestSpecie test_to_inchi tests/core/test_data_model.py 116 Pass 0.009
tests.core.test_data_model.TestSpecie test_to_mol tests/core/test_data_model.py 121 Pass 0.005
tests.core.test_data_model.TestSpecie test_to_openbabel tests/core/test_data_model.py 126 Pass 0.002
tests.core.test_data_model.TestSpecie test_to_pybel tests/core/test_data_model.py 130 Pass 0.002
tests.core.test_data_model.TestSpecie test_to_smiles tests/core/test_data_model.py 134 Pass 0.003
tests.data_source.test_gene_ortholog.TestKeggOr... test_uniprot_to_org_gene tests/data_source/test_gene... 35 Skipped 0.029
tests.util.test_file_util.TestFileUtil test_unpack_list tests/util/test_file_util.py 50 Pass 0.001
tests.util.test_file_util.TestFileUtil test_unzip_file tests/util/test_file_util.py 132 Skipped 0.043
tests.data_source.test_sabio_rk.TestAll test_update_all_and_backup tests/data_source/test_sabi... 869 Skipped 0.002
tests.data_source.test_metabolite_nosql.TestMet... test_write_to_json tests/data_source/test_meta... 42 Skipped 0.022