KarrLab / datanator_query_python / #570 / 3.7.6

Info

Statistics

  • Test classes: 33
  • Test cases: 165
  • Pass rate (%): 100.0
  • Time (s): 48.73

Test cases

Class Case File Line Result Time (s)
project.tests.util.test_file_util.TestFileUtil test_access_dict_by_index project/tests/util/test_fil... 56 Pass 0.002
project.tests.aggregate.test_pipelines.TestPipe... test_aggregate_common_canon... project/tests/aggregate/tes... 15 Pass 0.002
project.tests.aggregate.test_pipelines.TestPipe... test_aggregate_field_count project/tests/aggregate/tes... 34 Pass 0.002
project.tests.aggregate.test_pipelines.TestPipe... test_aggregate_kegg_orthology project/tests/aggregate/tes... 20 Pass 0.002
project.tests.aggregate.test_pipelines.TestPipe... test_aggregate_total_array_... project/tests/aggregate/tes... 30 Pass 0.002
project.tests.config.test_config.TestConfig test_basic_config project/tests/config/test_c... 18 Pass 0.002
project.tests.query.test_full_text_query.TestFTX test_bool_query project/tests/query/test_fu... 144 Pass 1.939
project.tests.util.test_mongo_util.TestMongoUtil test_build_taxon_object project/tests/util/test_mon... 299 Pass 1.232
project.tests.test_main.CliTestCase test_cli project/tests/test_main.py 20 Pass 0.010
project.tests.aggregate.test_lookups.TestLookups test_complex_lookup project/tests/aggregate/tes... 20 Pass 0.002
project.tests.util.test_mongo_util.TestMongoUtil test_con_db project/tests/util/test_mon... 49 Pass 0.001
project.tests.util.test_mongo_util.TestMongoUtil test_define_schema project/tests/util/test_mon... 71 Pass 0.099
project.tests.test_main.CliTestCase test_define_schema project/tests/test_main.py 49 Pass 0.413
project.tests.util.test_file_util.TestFileUtil test_distance_to_common project/tests/util/test_fil... 74 Pass 0.001
project.tests.query.test_query_taxon_tree.TestQ... test_each_under_category project/tests/query/test_qu... 111 Pass 0.058
project.tests.util.test_file_util.TestFileUtil test_exists_key_value_pair project/tests/util/test_fil... 121 Pass 0.001
project.tests.util.test_file_util.TestFileUtil test_extract_values project/tests/util/test_fil... 32 Pass 0.002
project.tests.config.test_query_manager.TestQue... test_eymdb_manager project/tests/config/test_q... 23 Pass 0.065
project.tests.query.test_query_sabiork.TestQuer... test_find_reaction_particip... project/tests/query/test_qu... 37 Pass 0.060
project.tests.util.test_file_util.TestFileUtil test_flatten_json project/tests/util/test_fil... 19 Pass 0.001
project.tests.config.test_config.TestConfig test_ftx_config project/tests/config/test_c... 34 Pass 0.002
project.tests.query.test_query_protein.TestQuer... test_get_abundance_by_id project/tests/query/test_qu... 186 Skipped 1.918
project.tests.query.test_query_protein.TestQuer... test_get_abundance_by_ko project/tests/query/test_qu... 248 Pass 0.007
project.tests.query.test_query_protein.TestQuer... test_get_abundance_by_taxon project/tests/query/test_qu... 229 Pass 0.004
project.tests.query.test_query_pax.TestQueryPax test_get_abundance_from_uni... project/tests/query/test_qu... 36 Pass 2.939
project.tests.query.test_query_protein.TestQuer... test_get_abundance_with_sam... project/tests/query/test_qu... 239 Pass 0.010
project.tests.query.test_query_xmdb.TestQueryEcmdb test_get_all_concentrations project/tests/query/test_qu... 33 Skipped 0.116
project.tests.query.test_query_protein.TestQuer... test_get_all_kegg project/tests/query/test_qu... 278 Skipped 0.001
project.tests.query.test_query_pax.TestQueryPax test_get_all_species project/tests/query/test_qu... 32 Pass 0.007
project.tests.query.test_query_taxon_tree.TestQ... test_get_all_species project/tests/query/test_qu... 28 Skipped 0.001
project.tests.query.test_query_taxon_tree.TestQ... test_get_anc_by_id project/tests/query/test_qu... 63 Pass 0.012
project.tests.query.test_query_taxon_tree.TestQ... test_get_anc_by_name project/tests/query/test_qu... 56 Pass 0.109
project.tests.query.test_query_taxon_tree.TestQ... test_get_canon_common_ancestor project/tests/query/test_qu... 117 Pass 0.572
project.tests.query.test_query_taxon_tree.TestQ... test_get_canon_common_ances... project/tests/query/test_qu... 140 Pass 0.031
project.tests.query.test_query_taxon_tree.TestQ... test_get_canon_rank_distance project/tests/query/test_qu... 85 Pass 0.520
project.tests.query.test_query_taxon_tree.TestQ... test_get_canon_rank_distanc... project/tests/query/test_qu... 93 Pass 0.487
project.tests.query.test_query_taxon_tree.TestQ... test_get_common_ancestor project/tests/query/test_qu... 70 Pass 0.018
project.tests.query.test_query_corum.TestQueryC... test_get_complexes_with_ncbi project/tests/query/test_qu... 43 Pass 0.146
project.tests.query.test_query_corum.TestQueryC... test_get_complexes_with_uni... project/tests/query/test_qu... 36 Pass 0.037
project.tests.query.test_query_intact_complex.T... test_get_complex_with_ncbi project/tests/query/test_qu... 35 Pass 1.150
project.tests.query.test_query_metabolites.Test... test_get_concentration_count project/tests/query/test_qu... 64 Pass 0.434
project.tests.query.test_query_metabolite_conce... test_get_conc_count project/tests/query/test_qu... 26 Pass 0.064
project.tests.query.test_query_metabolites.Test... test_get_conc_from_inchi project/tests/query/test_qu... 34 Pass 0.507
project.tests.query.test_query_kegg_orthology.T... test_get_def_by_ko project/tests/query/test_qu... 39 Pass 1.933
project.tests.query.test_query_rna_halflife.Tes... test_get_doc_by_ko project/tests/query/test_qu... 37 Pass 0.063
project.tests.query.test_query_metabolites_meta... test_get_doc_by_name project/tests/query/test_qu... 102 Pass 1.027
project.tests.query.test_query_rna_halflife.Tes... test_get_doc_by_oln project/tests/query/test_qu... 24 Skipped 0.002
project.tests.query.test_query_rna_halflife.Tes... test_get_doc_by_protein_name project/tests/query/test_qu... 32 Pass 0.101
project.tests.util.test_mongo_util.TestMongoUtil test_get_duplicates project/tests/util/test_mon... 62 Pass 0.008
project.tests.util.test_mongo_util.TestMongoUtil test_get_duplicates_real project/tests/util/test_mon... 66 Skipped 0.002
project.tests.query.test_query_protein.TestQuer... test_get_equivalent_kegg_wi... project/tests/query/test_qu... 265 Pass 0.671
project.tests.query.test_query_protein.TestQuer... test_get_equivalent_protein project/tests/query/test_qu... 213 Pass 0.012
project.tests.query.test_query_protein.TestQuer... test_get_equivalent_protein... project/tests/query/test_qu... 220 Pass 0.014
project.tests.query.test_query_taxon_tree.TestQ... test_get_equivalent_species project/tests/query/test_qu... 182 Pass 0.198
project.tests.query.test_query_metabolites_meta... test_get_eymdb project/tests/query/test_qu... 97 Pass 0.107
project.tests.query.test_query_pax.TestQueryPax test_get_file_by_name project/tests/query/test_qu... 47 Pass 0.495
project.tests.query.test_query_pax.TestQueryPax test_get_file_by_ncbi_id project/tests/query/test_qu... 54 Pass 6.823
project.tests.query.test_query_pax.TestQueryPax test_get_file_by_organ project/tests/query/test_qu... 82 Pass 0.985
project.tests.query.test_query_pax.TestQueryPax test_get_file_by_publication project/tests/query/test_qu... 68 Pass 0.083
project.tests.query.test_query_pax.TestQueryPax test_get_file_by_quality project/tests/query/test_qu... 59 Pass 0.176
project.tests.query.test_full_text_query.TestFTX test_get_genes_ko_count project/tests/query/test_fu... 173 Pass 0.217
project.tests.query.test_full_text_query.TestFTX test_get_genes_orthodb_count project/tests/query/test_fu... 179 Pass 0.291
project.tests.query.test_query_uniprot.TestUniprot test_get_gene_name_by_locus project/tests/query/test_qu... 27 Pass 0.340
project.tests.query.test_query_uniprot.TestUniprot test_get_gene_protein_name_... project/tests/query/test_qu... 36 Pass 0.010
project.tests.query.test_query_taxon_tree.TestQ... test_get_ids_by_name project/tests/query/test_qu... 44 Pass 1.754
project.tests.query.test_query_sabio_reaction_e... test_get_ids_by_participant... project/tests/query/test_qu... 31 Pass 0.618
project.tests.query.test_query_metabolites_meta... test_get_ids_from_hash project/tests/query/test_qu... 52 Pass 0.006
project.tests.query.test_query_metabolites_meta... test_get_ids_from_hashes project/tests/query/test_qu... 60 Pass 0.099
project.tests.query.test_query_protein.TestQuer... test_get_id_by_name project/tests/query/test_qu... 166 Skipped 0.001
project.tests.query.test_query_uniprot.TestUniprot test_get_id_by_org_gene project/tests/query/test_qu... 44 Pass 0.059
project.tests.query.test_query_sabio_compound.T... test_get_inchikey_by_name project/tests/query/test_qu... 41 Skipped 0.092
project.tests.query.test_query_sabio_compound.T... test_get_inchikey_by_name_real project/tests/query/test_qu... 50 Pass 0.240
project.tests.query.test_full_text_query.TestFTX test_get_index_in_page project/tests/query/test_fu... 107 Skipped 0.001
project.tests.query.test_full_text_query.TestFTX test_get_index_ko_count project/tests/query/test_fu... 157 Pass 0.160
project.tests.query.test_query_uniprot.TestUniprot test_get_info_by_entrez_id project/tests/query/test_qu... 52 Pass 0.039
project.tests.query.test_query_sabiork_old.Test... test_get_info_by_entryid project/tests/query/test_qu... 113 Pass 0.140
project.tests.query.test_query_protein.TestQuer... test_get_info_by_ko project/tests/query/test_qu... 156 Pass 0.003
project.tests.query.test_query_protein.TestQuer... test_get_info_by_ko_abundance project/tests/query/test_qu... 161 Pass 0.003
project.tests.query.test_query_protein.TestQuer... test_get_info_by_taxonid project/tests/query/test_qu... 144 Pass 0.504
project.tests.query.test_query_protein.TestQuer... test_get_info_by_taxon_id_a... project/tests/query/test_qu... 150 Pass 0.504
project.tests.query.test_query_protein.TestQuer... test_get_info_by_text project/tests/query/test_qu... 130 Skipped 0.001
project.tests.query.test_query_protein.TestQuer... test_get_info_by_text_abund... project/tests/query/test_qu... 136 Skipped 0.001
project.tests.query.test_query_uniprot_org.Test... test_get_kegg_ortholog project/tests/query/test_qu... 16 Pass 0.583
project.tests.query.test_query_protein.TestQuer... test_get_kegg_orthology project/tests/query/test_qu... 256 Pass 0.004
project.tests.query.test_query_sabiork.TestQuer... test_get_kinlawid_by_inchi project/tests/query/test_qu... 47 Pass 1.946
project.tests.query.test_query_sabiork.TestQuer... test_get_kinlawid_by_name project/tests/query/test_qu... 63 Pass 1.663
project.tests.query.test_query_sabiork.TestQuer... test_get_kinlawid_by_rxn project/tests/query/test_qu... 56 Pass 0.246
project.tests.query.test_query_sabiork_old.Test... test_get_kinlawid_by_rxn project/tests/query/test_qu... 64 Pass 1.268
project.tests.query.test_query_sabiork_old.Test... test_get_kinlaw_by_entryid project/tests/query/test_qu... 107 Pass 0.003
project.tests.query.test_query_sabiork.TestQuer... test_get_kinlaw_by_environment project/tests/query/test_qu... 74 Pass 2.379
project.tests.query.test_query_sabiork_old.Test... test_get_kinlaw_by_environment project/tests/query/test_qu... 33 Skipped 0.001
project.tests.query.test_query_protein.TestQuer... test_get_kinlaw_by_id project/tests/query/test_qu... 172 Pass 0.003
project.tests.query.test_query_protein.TestQuer... test_get_kinlaw_by_name project/tests/query/test_qu... 179 Skipped 0.001
project.tests.query.test_query_sabiork_old.Test... test_get_kinlaw_by_rxn project/tests/query/test_qu... 84 Pass 5.127
project.tests.query.test_query_sabiork_old.Test... test_get_kinlaw_by_rxn_name project/tests/query/test_qu... 123 Pass 0.009
project.tests.query.test_query_kegg_orthology.T... test_get_ko_by_name project/tests/query/test_qu... 31 Pass 0.019
project.tests.query.test_query_kegg_orthology.T... test_get_loci_by_id_org project/tests/query/test_qu... 45 Pass 0.044
project.tests.query.test_query_metabolites_meta... test_get_metabolites_meta project/tests/query/test_qu... 93 Pass 0.222
project.tests.query.test_query_metabolites_meta... test_get_metabolite_hashed_... project/tests/query/test_qu... 80 Pass 0.033
project.tests.query.test_query_metabolites_meta... test_get_metabolite_inchi project/tests/query/test_qu... 44 Pass 0.017
project.tests.query.test_query_metabolites_meta... test_get_metabolite_name_by... project/tests/query/test_qu... 70 Pass 0.019
project.tests.query.test_query_metabolites_meta... test_get_metabolite_synonyms project/tests/query/test_qu... 27 Pass 0.262
project.tests.query.test_query_kegg_orthology.T... test_get_meta_by_kegg_id project/tests/query/test_qu... 61 Pass 0.057
project.tests.query.test_query_kegg_orthology.T... test_get_meta_by_kegg_ids project/tests/query/test_qu... 55 Pass 0.048
project.tests.query.test_query_protein.TestQuer... test_get_meta_by_name_name project/tests/query/test_qu... 123 Skipped 0.001
project.tests.query.test_query_protein.TestQuer... test_get_meta_by_name_taxon project/tests/query/test_qu... 113 Skipped 0.001
project.tests.query.test_query_metabolites.Test... test_get_meta_from_inchis project/tests/query/test_qu... 47 Pass 0.438
project.tests.query.test_query_taxon_tree.TestQ... test_get_name_by_id project/tests/query/test_qu... 39 Pass 0.005
project.tests.query.test_query_xmdb.TestQueryEcmdb test_get_name_by_inchikey project/tests/query/test_qu... 38 Skipped 0.045
project.tests.query.test_query_kegg_organism_co... test_get_ncbi_by_org_code project/tests/query/test_qu... 28 Pass 0.194
project.tests.query.test_full_text_query.TestFTX test_get_num_source project/tests/query/test_fu... 88 Skipped 0.001
project.tests.query.test_query_kegg_organism_co... test_get_org_code_by_ncbi project/tests/query/test_qu... 22 Pass 0.020
project.tests.query.test_query_protein.TestQuer... test_get_protein_meta project/tests/query/test_qu... 104 Pass 0.150
project.tests.query.test_query_uniprot_org.Test... test_get_protein_name project/tests/query/test_qu... 24 Pass 0.017
project.tests.query.test_query_protein.TestQuer... test_get_proximity_abundanc... project/tests/query/test_qu... 199 Pass 0.009
project.tests.query.test_query_taxon_tree.TestQ... test_get_rank project/tests/query/test_qu... 79 Pass 0.133
project.tests.query.test_query_sabiork_old.Test... test_get_reaction_by_subunit project/tests/query/test_qu... 149 Pass 0.023
project.tests.query.test_query_sabiork.TestQuer... test_get_reaction_doc project/tests/query/test_qu... 30 Pass 0.006
project.tests.query.test_query_sabiork_old.Test... test_get_reaction_doc project/tests/query/test_qu... 57 Skipped 0.001
project.tests.query.test_full_text_query.TestFTX test_get_rxn_oi project/tests/query/test_fu... 168 Pass 0.159
project.tests.query.test_query_sabiork_old.Test... test_get_rxn_with_prm project/tests/query/test_qu... 143 Pass 0.012
project.tests.query.test_query_metabolite_conce... test_get_similar_concentrat... project/tests/query/test_qu... 21 Pass 0.719
project.tests.query.test_query_uniprot.TestUniprot test_get_similar_proteins project/tests/query/test_qu... 71 Skipped 0.003
project.tests.query.test_query_uniprot.TestUniprot test_get_similar_proteins_f... project/tests/query/test_qu... 60 Skipped 0.033
project.tests.query.test_full_text_query.TestFTX test_get_single_index_count project/tests/query/test_fu... 134 Pass 0.548
project.tests.query.test_query_sabiork.TestQuer... test_get_subunit_by_id project/tests/query/test_qu... 97 Pass 0.030
project.tests.query.test_query_uniprot_org.Test... test_get_uniprot project/tests/query/test_qu... 20 Pass 0.017
project.tests.query.test_query_protein.TestQuer... test_get_uniprot_by_ko project/tests/query/test_qu... 233 Pass 0.007
project.tests.query.test_query_metabolites_meta... test_get_unique_metabolites project/tests/query/test_qu... 89 Pass 0.159
project.tests.query.test_query_protein.TestQuer... test_get_unique_organism project/tests/query/test_qu... 274 Pass 0.412
project.tests.query.test_query_sabiork_old.Test... test_get_unique_organisms project/tests/query/test_qu... 138 Skipped 0.001
project.tests.query.test_query_protein.TestQuer... test_get_unique_protein project/tests/query/test_qu... 269 Skipped 0.036
project.tests.query.test_query_sabiork_old.Test... test_get_unique_reactions project/tests/query/test_qu... 133 Skipped 0.005
project.tests.util.test_file_util.TestFileUtil test_get_val_from_dict_list project/tests/util/test_fil... 42 Pass 0.001
project.tests.util.test_chem_util.TestChemUtil test_hash_inchi project/tests/util/test_che... 24 Pass 0.002
project.tests.test_main.CliTestCase test_help project/tests/test_main.py 27 Pass 0.010
project.tests.util.test_mongo_util.TestMongoUtil test_list_all_collections project/tests/util/test_mon... 45 Pass 0.006
project.tests.util.test_file_util.TestFileUtil test_make_dict project/tests/util/test_fil... 94 Pass 0.001
project.tests.util.test_file_util.TestFileUtil test_merge_dict project/tests/util/test_fil... 116 Pass 0.001
project.tests.util.test_chem_util.TestChemUtil test_morphineInChIKey project/tests/util/test_che... 30 Pass 0.001
project.tests.util.test_parse_heroku_logs.TestP... test_parse_regex project/tests/util/test_par... 44 Pass 0.005
project.tests.util.test_parse_heroku_logs.TestP... test_parse_router project/tests/util/test_par... 59 Pass 0.004
project.tests.util.test_mongo_util.TestMongoUtil test_print_schema project/tests/util/test_mon... 56 Pass 0.011
project.tests.config.test_config.TestConfig test_prod_config project/tests/config/test_c... 25 Pass 0.002
project.tests.config.test_query_manager.TestQue... test_protein_manager project/tests/config/test_q... 19 Pass 0.065
project.tests.query.test_query_sabio_compound.T... test_query_sabio_compound project/tests/query/test_qu... 33 Pass 0.038
project.tests.util.test_file_util.TestFileUtil test_replace_dict_key project/tests/util/test_fil... 62 Pass 0.001
project.tests.query.test_full_text_query.TestFTX test_request_body_search project/tests/query/test_fu... 55 Skipped 0.001
project.tests.config.test_query_manager.TestRxn... test_rxn_manager project/tests/config/test_q... 34 Pass 0.072
project.tests.config.test_query_manager.TestTax... test_rxn_manager project/tests/config/test_q... 45 Pass 0.009
project.tests.config.test_query_manager.TestFtx... test_rxn_manager project/tests/config/test_q... 56 Pass 0.055
project.tests.util.test_file_util.TestFileUtil test_search_dict_index project/tests/util/test_fil... 68 Pass 0.001
project.tests.util.test_file_util.TestFileUtil test_search_dict_list project/tests/util/test_fil... 101 Pass 0.001
project.tests.aggregate.test_lookups.TestLookups test_simple_lookup project/tests/aggregate/tes... 16 Pass 0.002
project.tests.query.test_full_text_query.TestFTX test_simple_query_string project/tests/query/test_fu... 66 Skipped 0.001
project.tests.query.test_full_text_query.TestFTX test_simple_query_string_real project/tests/query/test_fu... 79 Skipped 0.093
project.tests.util.test_chem_util.TestChemUtil test_simplify_inchi project/tests/util/test_che... 18 Pass 0.006
project.tests.aggregate.test_tabu.TestTabu test_taxon_dist project/tests/aggregate/tes... 31 Pass 0.159
project.tests.config.test_config.TestConfig test_test_config project/tests/config/test_c... 29 Pass 0.001
project.tests.query.test_query_taxon_tree.TestQ... test_under_category project/tests/query/test_qu... 104 Pass 0.024
project.tests.aggregate.test_tabu.TestTabu test_uniprot_taxon_dist project/tests/aggregate/tes... 23 Skipped 0.003
project.tests.util.test_file_util.TestFileUtil test_unpack_list project/tests/util/test_fil... 50 Pass 0.007
project.tests.util.test_mongo_util.TestMongoUtil test_update_entity project/tests/util/test_mon... 88 Pass 0.003
project.tests.util.test_mongo_util.TestMongoUtil test_update_observation project/tests/util/test_mon... 82 Pass 0.057
project.tests.test_main.CliTestCase test_version project/tests/test_main.py 32 Pass 0.178