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KarrLab / h1_hesc / #3129 / 3.7.6

Info

Statistics

  • Test classes: 44
  • Test cases: 90
  • Pass rate (%): 97.2
  • Time (s): 875.35

Test cases

Class Case File Line Result Time (s)
tests.test_api.ApiTestCase test tests/test_api.py 15 Pass 0.001
tests.cell_cycle.test_hybrid_model_rules.TestCase test tests/cell_cycle/test_hybri... 5 Pass 1.286
tests.code.cell_cycle.test_cell_cycle.TestCellC... test tests/code/cell_cycle/test_... 24 Pass 6.935
tests.model.hesc_recon.test_hesc_recon_to_wc_da... test tests/model/hesc_recon/test... 5 Skipped 0.106
tests.code.model.fba_simulation.test_metabolite... test_add_metabolite_as_obje... tests/code/model/fba_simula... 46 Pass 0.060
tests.code.model.fba_simulation.test_model_sett... test_adjust_bounds tests/code/model/fba_simula... 130 Pass 0.013
tests.code.kb_gen.test_api.TestApi test_api tests/code/kb_gen/test_api.py 15 Pass 0.001
tests.code.model.fba_simulation.test_model_sett... test_block_all_exchange_rea... tests/code/model/fba_simula... 63 Pass 0.012
tests.test_utils.UtilTest test_calc_eff_vmax tests/test_utils.py 92 Pass 0.002
tests.test_utils.UtilTest test_calc_median_kcat tests/test_utils.py 81 Pass 0.002
tests.model.cell_cycle.test_cyclin_dynamics.Tes... test_calc_reaction_rates_dM tests/model/cell_cycle/test... 64 Skipped 0.001
tests.model.cell_cycle.test_exponential_growth_... test_calc_reaction_rates_dM tests/model/cell_cycle/test... 61 Skipped 0.001
tests.model.hesc_recon.test_hesc_recon_cobra.Mo... test_cobra_model tests/model/hesc_recon/test... 24 Skipped 0.001
tests.code.model.fba_simulation.test_model_sett... test_convert_model_for_optim tests/code/model/fba_simula... 157 Pass 0.011
tests.cell_cycle.test_sbml_to_wc_lang.Construct... test_create_model tests/cell_cycle/test_sbml_... 44 Pass 0.915
tests.test_utils.UtilTest test_eval_gene_reaction_rule tests/test_utils.py 60 Pass 0.002
tests.model.cell_cycle.test_cyclin_dynamics.Tes... test_exponential_growth_in_M tests/model/cell_cycle/test... 90 Skipped 0.001
tests.model.cell_cycle.test_exponential_growth_... test_exponential_growth_in_M tests/model/cell_cycle/test... 87 Skipped 0.001
tests.code.model.fba_simulation.test_metabolite... test_extract_biomass_compon... tests/code/model/fba_simula... 40 Pass 0.007
tests.test_utils.UtilTest test_extract_info_from_string tests/test_utils.py 207 Pass 0.001
tests.model.fba_simulation.test_model_simulatio... test_flux_variability_analysis tests/model/fba_simulation/... 201 Skipped 0.001
tests.code.kb_gen.test_genes_transcripts_exons_... test_generate_chunks tests/code/kb_gen/test_gene... 186 Pass 0.003
tests.code.kb_gen.test_core.TestCase test_generator tests/code/kb_gen/test_core.py 29 Pass 0.011
tests.code.scaled_down_model.test_kb_core.TestCase test_generator tests/code/scaled_down_mode... 24 Pass 0.010
tests.code.kb_gen.test_metabolic_reaction_kinet... test_gen_components tests/code/kb_gen/test_meta... 319 Pass 57.562
tests.code.model_gen.test_complexation_option.T... test_gen_options tests/code/model_gen/test_c... 17 Pass 0.003
tests.code.model_gen.test_initialize_model_opti... test_gen_options tests/code/model_gen/test_i... 40 Pass 0.012
tests.code.model_gen.test_metabolism_option.Tes... test_gen_options tests/code/model_gen/test_m... 19 Pass 0.003
tests.code.model_gen.test_protein_degradation_o... test_gen_options tests/code/model_gen/test_p... 17 Pass 0.003
tests.code.model_gen.test_rna_degradation_optio... test_gen_options tests/code/model_gen/test_r... 16 Pass 0.003
tests.code.model_gen.test_transcription_option.... test_gen_options tests/code/model_gen/test_t... 16 Pass 0.003
tests.code.model_gen.test_translation_transloca... test_gen_options tests/code/model_gen/test_t... 17 Skipped 0.001
tests.model.hesc_recon.test_hesc_recon_cobra.Pr... test_get_aminoacid_content tests/model/hesc_recon/test... 141 Pass 0.729
tests.model.fba_simulation.test_model_simulatio... test_get_bounds_for_media tests/model/fba_simulation/... 37 Skipped 0.001
tests.test_utils.UtilTest test_get_complexes_from_gen... tests/test_utils.py 105 Pass 0.004
tests.cell_cycle.test_sbml_to_wc_lang.Construct... test_get_data tests/cell_cycle/test_sbml_... 100 Pass 0.922
tests.code.kb_gen.test_metabolic_reaction_kinet... test_get_data tests/code/kb_gen/test_meta... 35 Pass 63.143
tests.test_utils.UtilTest test_get_enzyme_equation tests/test_utils.py 186 Pass 1.867
tests.model.fba_simulation.test_model_simulatio... test_get_kinetic_bounds tests/model/fba_simulation/... 55 Skipped 0.001
tests.model.fba_simulation.test_model_simulatio... test_get_non_active_reactions tests/model/fba_simulation/... 46 Skipped 0.001
tests.cell_cycle.test_sbml_to_wc_lang.Construct... test_get_parameters tests/cell_cycle/test_sbml_... 41 Pass 0.001
tests.model.hesc_recon.test_hesc_recon_cobra.Pr... test_get_protein_abundance tests/model/hesc_recon/test... 118 Pass 36.059
tests.cell_cycle.test_sbml_to_wc_lang.Construct... test_get_reactions tests/cell_cycle/test_sbml_... 38 Pass 0.001
tests.test_utils.UtilTest test_get_reaction_equation tests/test_utils.py 168 Pass 0.001
tests.cell_cycle.test_sbml_to_wc_lang.Construct... test_get_species tests/cell_cycle/test_sbml_... 35 Pass 0.001
tests.test_utils.UtilTest test_get_value_inchi_formul... tests/test_utils.py 221 Pass 0.001
tests.test_main.CliTestCase test_get_version tests/test_main.py 45 Pass 0.019
tests.code.model_gen.test_core.TestH1ModelGener... test_H1ModelGenerator tests/code/model_gen/test_c... 18 Pass 0.004
tests.test_utils.UtilTest test_has_all_inchi_structures tests/test_utils.py 158 Pass 0.001
tests.model.fba_simulation.test_model_simulatio... test_linear_optimization tests/model/fba_simulation/... 102 Skipped 0.002
tests.code.kb_gen.test_core.TestCase test_main tests/code/kb_gen/test_core.py 91 Pass 1.201
tests.code.model_gen.test_main.TestCase test_main tests/code/model_gen/test_m... 25 Pass 22.331
tests.code.model_sim.test_sim_main.TestCase test_main tests/code/model_sim/test_s... 26 Failure 8.071
tests.code.scaled_down_model.test_sim_core.Test... test_main tests/code/scaled_down_mode... 27 Failure 7.830
tests.model.fba_simulation.test_model_simulatio... test_metabolite_testing tests/model/fba_simulation/... 72 Skipped 0.002
tests.code.kb_gen.test_chromosomes.Test test_methods tests/code/kb_gen/test_chro... 28 Pass 0.006
tests.code.kb_gen.test_compartments.Compartment... test_methods tests/code/kb_gen/test_comp... 19 Pass 0.006
tests.code.kb_gen.test_complexes.Test test_methods tests/code/kb_gen/test_comp... 22 Pass 60.073
tests.code.kb_gen.test_genes_transcripts_exons_... test_methods tests/code/kb_gen/test_gene... 28 Pass 56.441
tests.code.kb_gen.test_metabolic_network.Test test_methods tests/code/kb_gen/test_meta... 42 Pass 135.448
tests.code.kb_gen.test_metabolites.MetabolitesG... test_methods tests/code/kb_gen/test_meta... 37 Pass 9.870
tests.code.kb_gen.test_properties.PropertiesGen... test_methods tests/code/kb_gen/test_prop... 30 Pass 0.388
tests.code.kb_gen.test_protein_modifications.Pr... test_methods tests/code/kb_gen/test_prot... 17 Pass 62.399
tests.code.kb_gen.test_proteins.Test test_methods tests/code/kb_gen/test_prot... 27 Pass 78.854
tests.code.kb_gen.test_regulatory_modules.Test test_methods tests/code/kb_gen/test_regu... 20 Pass 63.331
tests.code.kb_gen.test_transcripts.Test test_methods tests/code/kb_gen/test_tran... 119 Pass 59.448
tests.code.model.fba_simulation.test_metabolite... test_mock_run_metabolite_test tests/code/model/fba_simula... 56 Pass 0.027
tests.code.model.fba_simulation.test_model_sett... test_model_for_recalibration tests/code/model/fba_simula... 170 Pass 0.012
tests.code.model_gen.test_core.TestOptionGenerator test_option_component_gener... tests/code/model_gen/test_c... 51 Pass 0.001
tests.code.model.fba_simulation.test_model_sett... test_ori_state_comments tests/code/model/fba_simula... 55 Pass 0.010
tests.test_utils.UtilTest test_parse_cobra_reaction_e... tests/test_utils.py 47 Pass 0.001
tests.code.kb_gen.test_metabolic_reaction_kinet... test_process_data tests/code/kb_gen/test_meta... 122 Pass 61.705
tests.model.fba_simulation.test_model_simulatio... test_quadratic_optimization tests/model/fba_simulation/... 126 Skipped 0.001
tests.code.model.fba_simulation.test_model_sett... test_raiseValueError tests/code/model/fba_simula... 208 Pass 0.010
tests.test_main.CliTestCase test_raw_cli tests/test_main.py 18 Pass 0.046
tests.model.fba_simulation.test_model_simulatio... test_recalibrate_model tests/model/fba_simulation/... 152 Skipped 0.001
tests.test_utils.UtilTest test_remove_inchi_layer tests/test_utils.py 23 Pass 0.002
tests.code.kb_gen.test_taxon.TaxonGeneratorTest... test_run tests/code/kb_gen/test_taxo... 17 Pass 0.002
tests.code.kb_gen.test_genes_transcripts_exons_... test_scaled_down_option tests/code/kb_gen/test_gene... 206 Pass 57.412
tests.code.model.fba_simulation.test_model_sett... test_scale_bounds tests/code/model/fba_simula... 115 Pass 0.013
tests.code.scaled_down_model.test_sim_core.Test... test_scaling tests/code/scaled_down_mode... 76 Pass 6.473
tests.code.kb_gen.test_metabolites.MetabolitesG... test_selected_metabolites tests/code/kb_gen/test_meta... 215 Pass 10.048
tests.code.kb_gen.test_metabolic_network.Test test_selected_reactions tests/code/kb_gen/test_meta... 119 Pass 4.109
tests.model.fba_simulation.test_model_simulatio... test_sensitivity_analysis tests/model/fba_simulation/... 186 Skipped 0.001
tests.code.model.fba_simulation.test_model_sett... test_set_bounds_for_media tests/code/model/fba_simula... 72 Pass 0.011
tests.model.fba_simulation.test_model_simulatio... test_set_bound_type tests/model/fba_simulation/... 59 Skipped 0.001
tests.code.model.fba_simulation.test_model_sett... test_set_kinetic_bounds tests/code/model/fba_simula... 102 Pass 0.011
tests.model.fba_simulation.test_model_simulatio... test_single_cell_simulation tests/model/fba_simulation/... 247 Skipped 0.001
tests.code.model.fba_simulation.test_model_sett... test_switch_off_non_active_... tests/code/model/fba_simula... 92 Pass 0.010
tests.code.model.fba_simulation.test_model_sett... test_use_input_bounds tests/code/model/fba_simula... 146 Pass 0.013
Icahn Institute for Genomics & Multiscale Biology
Department of Genetics & Genomic Sciences
Icahn School of Medicine at Mount Sinai
© Karr Lab 2011-2015
Last updated Feb. 12, 2019, 1:38 p.m.