|
project.tests.test_api.ApiTestCase |
test |
project/tests/test_api.py |
15 |
Pass |
0.002 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_model_composit... |
test |
project/tests/cell_modeling... |
23 |
Pass |
2.988 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test |
project/tests/concepts_skil... |
15 |
Pass |
0.064 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test |
project/tests/concepts_skil... |
15 |
Pass |
0.471 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test |
project/tests/concepts_skil... |
15 |
Pass |
0.002 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test |
project/tests/concepts_skil... |
15 |
Pass |
0.002 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Hello reader
|
|---|
| Standard error | |
|---|
|
|
project.tests.wc_modeling.test_wc_lang.TestWC_Lang |
test |
project/tests/wc_modeling/t... |
15 |
Pass |
4.271 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | SpeciesCoefficient:
species:
Species:
id: atp[c]
name:
species_type:
SpeciesType: ...
compartment:
Compartment: ...
units: molecule
identifiers:
evidence:
conclusions:
comments:
references:
model: None
distribution_init_concentration: None
observable_expressions:
function_expressions:
stop_condition_expressions:
species_coefficients:
rate_law_expressions:
dfba_obj_species:
coefficient: -1
reactions:
Reaction:
id: atp_hydrolysis
name: ATP hydrolysis
submodel: None
participants:
SpeciesCoefficient: ...
SpeciesCoefficient: ...
SpeciesCoefficient: ...
SpeciesCoefficient: ...
reversible: False
rate_units: 1 / second
flux_bounds: None
identifiers:
evidence:
conclusions:
comments: example comments
references:
model: None
dfba_obj_expression: None
rate_laws:
|
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_analysis |
project/tests/cell_modeling... |
118 |
Pass |
0.003 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_boolean_exercise |
project/tests/cell_modeling... |
26 |
Pass |
0.393 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test_cli_api |
project/tests/concepts_skil... |
17 |
Pass |
0.064 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | Arg = `value`
|
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_containsCarbon |
project/tests/cell_modeling... |
131 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_dfba_exercise |
project/tests/cell_modeling... |
35 |
Pass |
0.350 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_dfba_exercise_negative... |
project/tests/cell_modeling... |
38 |
Pass |
0.008 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_get_steady_state |
project/tests/cell_modeling... |
56 |
Pass |
0.008 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test_invalid_inputs |
project/tests/concepts_skil... |
74 |
Pass |
0.002 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_mrna_and_proteins_usin... |
project/tests/cell_modeling... |
47 |
Pass |
0.525 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_mrna_and_proteins_usin... |
project/tests/cell_modeling... |
50 |
Pass |
4.982 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_mrna_and_proteins_usin... |
project/tests/cell_modeling... |
53 |
Pass |
1.655 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_ode_exercise |
project/tests/cell_modeling... |
29 |
Pass |
0.310 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_parseStoichiometry_exc... |
project/tests/cell_modeling... |
135 |
Pass |
0.009 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test_raw_cli |
project/tests/concepts_skil... |
27 |
Pass |
0.010 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | usage: intro_to_wc_modeling [-h] [-d] [-q] arg
Example command line interface
positional arguments:
arg Example argument
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
|
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test_run |
project/tests/concepts_skil... |
39 |
Pass |
0.003 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_simulation |
project/tests/cell_modeling... |
81 |
Pass |
246.148 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Simulating for 2881 time steps from 0-28800.0 s
Step = 1, t = 10.0 s
Step = 101, t = 1010.0 s
Step = 201, t = 2010.0 s
Step = 301, t = 3010.0 s
Step = 401, t = 4010.0 s
Step = 501, t = 5010.0 s
Step = 601, t = 6010.0 s
Step = 701, t = 7010.0 s
Step = 801, t = 8010.0 s
Step = 901, t = 9010.0 s
Step = 1001, t = 10010.0 s
Step = 1101, t = 11010.0 s
Step = 1201, t = 12010.0 s
Step = 1301, t = 13010.0 s
Step = 1401, t = 14010.0 s
Step = 1501, t = 15010.0 s
Step = 1601, t = 16010.0 s
Step = 1701, t = 17010.0 s
Step = 1801, t = 18010.0 s
Step = 1901, t = 19010.0 s
Step = 2001, t = 20010.0 s
Step = 2101, t = 21010.0 s
Step = 2201, t = 22010.0 s
Step = 2301, t = 23010.0 s
Step = 2401, t = 24010.0 s
Step = 2501, t = 25010.0 s
Step = 2601, t = 26010.0 s
Step = 2701, t = 27010.0 s
Step = 2801, t = 28010.0 s
|
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test_statistics |
project/tests/concepts_skil... |
52 |
Pass |
0.868 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test_stdout |
project/tests/concepts_skil... |
65 |
Pass |
0.055 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | Time 0: 4 molecules
Time 0: 3 molecules
Time 1: 6 molecules
Time 2: 5 molecules
Time 3: 3 molecules
Time 4: 4 molecules
Time 5: 2 molecules
Time 6: 4 molecules
Time 7: 3 molecules
Time 8: 3 molecules
Time 9: 2 molecules
Time 9: 2 molecules
Time 9: 2 molecules
|
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_stochastic_exercise |
project/tests/cell_modeling... |
32 |
Pass |
1.113 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.cell_modeling.test_simulation.Tes... |
test_submodel_simulation |
project/tests/cell_modeling... |
96 |
Pass |
39.739 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Simulating for 2881 time steps from 0-28800.0 s
Step = 1, t = 10.0 s
Step = 101, t = 1010.0 s
Step = 201, t = 2010.0 s
Step = 301, t = 3010.0 s
Step = 401, t = 4010.0 s
Step = 501, t = 5010.0 s
Step = 601, t = 6010.0 s
Step = 701, t = 7010.0 s
Step = 801, t = 8010.0 s
Step = 901, t = 9010.0 s
Step = 1001, t = 10010.0 s
Step = 1101, t = 11010.0 s
Step = 1201, t = 12010.0 s
Step = 1301, t = 13010.0 s
Step = 1401, t = 14010.0 s
Step = 1501, t = 15010.0 s
Step = 1601, t = 16010.0 s
Step = 1701, t = 17010.0 s
Step = 1801, t = 18010.0 s
Step = 1901, t = 19010.0 s
Step = 2001, t = 20010.0 s
Step = 2101, t = 21010.0 s
Step = 2201, t = 22010.0 s
Step = 2301, t = 23010.0 s
Step = 2401, t = 24010.0 s
Step = 2501, t = 25010.0 s
Step = 2601, t = 26010.0 s
Step = 2701, t = 27010.0 s
Step = 2801, t = 28010.0 s
|
|---|
| Standard error | |
|---|
|
|
project.tests.concepts_skills.software_engineer... |
test_trajectory_exception |
project/tests/concepts_skil... |
83 |
Pass |
0.002 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
