|
project.tests.test_api.ApiTestCase |
test |
project/tests/test_api.py |
13 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_analyze_package |
project/tests/test_core.py |
2310 |
Pass |
29.078 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_coverage_report |
project/tests/test_core.py |
1654 |
Pass |
2.996 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report |
project/tests/test_core.py |
1568 |
Pass |
0.697 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report_err |
project/tests/test_core.py |
1588 |
Pass |
0.242 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report_no... |
project/tests/test_core.py |
1583 |
Pass |
0.213 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_are_package_dependenci... |
project/tests/test_core.py |
1932 |
Pass |
1.071 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_BuildHelperError |
project/tests/test_core.py |
2558 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_combine_coverage_reports |
project/tests/test_core.py |
1607 |
Pass |
0.490 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_combine_coverage_repor... |
project/tests/test_core.py |
1646 |
Pass |
0.201 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_compile_downstream_dep... |
project/tests/test_core.py |
1857 |
Pass |
0.849 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_code_climate_gi... |
project/tests/test_core.py |
486 |
Pass |
0.887 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_documentation_t... |
project/tests/test_core.py |
1734 |
Pass |
0.491 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_documentation_t... |
project/tests/test_core.py |
1771 |
Pass |
0.632 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_package |
project/tests/test_core.py |
116 |
Pass |
21.544 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | This program will guide you through creating a new package.
Creating private remote Git repository "KarrLab/test_a" on GitHub and cloning this repository to "/tmp/tmpg31selzv/test_a"
Visit "https://codeclimate.com/dashboard" and click on the "KarrLab" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_a" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_a" repository and click its "OFF" button
Click the details button for the "KarrLab/test_a" repository
Click the "Settings" menu item
Click the "README BADGE" EMBED" button
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_a" repository and click its "Set Up Project" button
Click the "Start building" button
Click the "Project settings" icon
Click the "API permissions" menu item
Click the "Create Token" button
Select "All", enter a label, and click the "Add Token" button
Visit "https://pypi.org/manage/project/test_a/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-a"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
This program will guide you through creating a new package.
Creating public remote Git repository "KarrLab/test_b" on GitHub and cloning this repository to "/tmp/tmpg31selzv/test_b"
Visit "https://codeclimate.com/dashboard" and click on the "Open source" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_b" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_b" repository and click its "OFF" button
Click the details button for the "KarrLab/test_b" repository
Click the "Settings" menu item
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_b" repository and click its "Set Up Project" button
Click the "Start building" button
Click the "Project settings" icon
Click the "Checkout SSH keys" button
Click the "Authorize with GitHub" button
Click the "Create and add ... user key" button
Visit "https://readthedocs.org/dashboard/import/?"
Click the "refresh" icon
Find the "test_b" repository and click its "+" button
Click the "Next" button
Click the "Admin" menu item
Click the "Advanced settings" menu item
Set the "Requirements file" to "docs/requirements.txt"
Set the "Python configuration file" to "docs/conf.py"
Set the "Python interpreter" to "CPython 3.x"
Click the "Maintainers" menu item
Add "karr-lab-daemon" to the maintainers
Click the "Notifications" menu item
Add your email address and click submit
Add "jonrkarr@gmail.com" and click submit
Visit "https://pypi.org/manage/project/test_b/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-b"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
This program will guide you through creating a new package.
Creating public remote Git repository "KarrLab/test_c" on GitHub and cloning this repository to "/tmp/tmpg31selzv/test_c"
Visit "https://codeclimate.com/dashboard" and click on the "Open source" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_c" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_c" repository and click its "OFF" button
Click the details button for the "KarrLab/test_c" repository
Click the "Settings" menu item
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_c" repository and click its "Set Up Project" button
Click the "Start building" button
Click the "Project settings" icon
Visit "https://readthedocs.org/dashboard/import/?"
Click the "refresh" icon
Find the "test_c" repository and click its "+" button
Click the "Next" button
Click the "Admin" menu item
Click the "Advanced settings" menu item
Set the "Requirements file" to "docs/requirements.txt"
Set the "Python configuration file" to "docs/conf.py"
Set the "Python interpreter" to "CPython 3.x"
Click the "Maintainers" menu item
Add "karr-lab-daemon" to the maintainers
Click the "Notifications" menu item
Add your email address and click submit
Add "jonrkarr@gmail.com" and click submit
Visit "https://pypi.org/manage/project/test_c/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-c"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_repository |
project/tests/test_core.py |
261 |
Pass |
9.306 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_delete_circleci_enviro... |
project/tests/test_core.py |
453 |
Pass |
1.071 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_docker_help |
project/tests/test_core.py |
697 |
Pass |
0.041 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | usage: karr_lab_build_utils docker [-h]
{remove-container,run-tests-in-container,install-package-to-container,create-container}
...
Docker utilities
optional arguments:
-h, --help show this help message and exit
sub-commands:
{remove-container,run-tests-in-container,install-package-to-container,create-container}
remove-container remove-container controller
run-tests-in-container
run-tests-in-container controller
install-package-to-container
install-package-to-container controller
create-container create-container controller
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_download_install_packa... |
project/tests/test_core.py |
2502 |
Pass |
0.429 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_download_package_confi... |
project/tests/test_core.py |
2451 |
Pass |
0.780 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_do_post_test_tasks |
project/tests/test_core.py |
774 |
Pass |
1.321 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_dummy_test |
project/tests/test_core.py |
2583 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_find_missing_requirements |
project/tests/test_core.py |
2347 |
Pass |
12.834 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_find_unused_requirements |
project/tests/test_core.py |
2379 |
Pass |
12.826 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_follow_circleci_build |
project/tests/test_core.py |
372 |
Pass |
5.607 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_follow_circleci_build_... |
project/tests/test_core.py |
383 |
Pass |
1.046 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_circleci_environme... |
project/tests/test_core.py |
399 |
Pass |
1.695 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_config |
project/tests/test_core.py |
2586 |
Pass |
0.003 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_test_results |
project/tests/test_core.py |
863 |
Pass |
0.220 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_version |
project/tests/test_core.py |
2507 |
Pass |
0.441 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_package_config... |
project/tests/test_core.py |
2480 |
Pass |
0.214 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_requirements |
project/tests/test_core.py |
503 |
Pass |
7.103 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Requirement already satisfied: setuptools in /usr/local/lib/python3.6/site-packages (40.3.0)
Requirement already satisfied: pip in /usr/local/lib/python3.6/site-packages (18.0)
Requirement already satisfied: abduct in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 2)) (2.0.0)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 3)) (3.0.0)
Requirement already satisfied: click in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 4)) (6.7)
Requirement already satisfied: configobj in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 6)) (4.5.1)
Requirement already satisfied: coveralls in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 7)) (1.5.0)
Requirement already satisfied: enum34 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 8)) (1.1.6)
Requirement already satisfied: ftputil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 9)) (3.4)
Requirement already satisfied: pkg_utils[all] from git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 10)) (0.0.3)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 from git+https://github.com/KarrLab/sphinxcontrib-googleanalytics.git#egg=sphinxcontrib_googleanalytics >= 0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 11)) (0.1.1)
Requirement already satisfied: wc_utils[all] from git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 12)) (0.0.1a5)
Requirement already satisfied: gitpython in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 13)) (2.1.11)
Requirement already satisfied: graphviz in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 14)) (0.9)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 15)) (2.10)
Requirement already satisfied: mock in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 16)) (2.0.0)
Requirement already satisfied: natsort in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 17)) (5.4.1)
Requirement already satisfied: networkx in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 18)) (2.1)
Requirement already satisfied: nose in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 19)) (1.3.7)
Requirement already satisfied: pip>=18.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 20)) (18.0)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 21)) (2.0.3)
Requirement already satisfied: pygithub in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 22)) (1.43.2)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 23)) (2.1.1)
Requirement already satisfied: pytest in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 24)) (3.8.0)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 25)) (2.7.3)
Requirement already satisfied: pyyaml in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 26)) (3.13)
Requirement already satisfied: requests in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 27)) (2.19.1)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 28)) (40.3.0)
Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 29)) (1.11.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 30)) (1.8.0)
Requirement already satisfied: sphinx_rtd_theme in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 31)) (0.4.1)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 32)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 33)) (0.4.0)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 34)) (4.2.0)
Requirement already satisfied: twine in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 35)) (1.11.0)
Requirement already satisfied: wheel in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 36)) (0.31.1)
Requirement already satisfied: whichcraft in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 37)) (0.4.1)
Requirement already satisfied: capturer in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpdldz0_6u.txt (line 38)) (2.4)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->-r /tmp/tmpdldz0_6u.txt (line 1)) (0.5.5)
Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.6/site-packages (from coveralls->-r /tmp/tmpdldz0_6u.txt (line 7)) (0.6.2)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 10)) (0.2.0)
Requirement already satisfied: glob2 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 10)) (0.6)
Requirement already satisfied: configparser in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 10)) (3.5.0)
Requirement already satisfied: pypandoc; extra == "all" in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 10)) (1.4)
Requirement already satisfied: diskcache in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (3.0.6)
Requirement already satisfied: qualname in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.1.0)
Requirement already satisfied: log in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (2016.10.12)
Requirement already satisfied: openpyxl in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (2.5.7)
Requirement already satisfied: numpy in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.15.1)
Requirement already satisfied: pronto>=0.12.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.12.1)
Requirement already satisfied: mendeleev in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.4.3)
Requirement already satisfied: pyexcel-io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.5.9.1)
Requirement already satisfied: pint in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.8.1)
Requirement already satisfied: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.5.9.1)
Requirement already satisfied: matplotlib; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (2.2.3)
Requirement already satisfied: scipy; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.1.0)
Requirement already satisfied: quilt; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (2.9.11)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->-r /tmp/tmpdldz0_6u.txt (line 13)) (2.0.4)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from jinja2->-r /tmp/tmpdldz0_6u.txt (line 15)) (1.0)
Requirement already satisfied: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->-r /tmp/tmpdldz0_6u.txt (line 16)) (4.2.0)
Requirement already satisfied: decorator>=4.1.0 in /usr/local/lib/python3.6/site-packages (from networkx->-r /tmp/tmpdldz0_6u.txt (line 18)) (4.3.0)
Requirement already satisfied: packaging in /usr/local/lib/python3.6/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmpdldz0_6u.txt (line 21)) (17.1)
Requirement already satisfied: pyjwt in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmpdldz0_6u.txt (line 22)) (1.6.4)
Requirement already satisfied: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmpdldz0_6u.txt (line 22)) (1.2.3)
Requirement already satisfied: astroid>=2.0.0 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmpdldz0_6u.txt (line 23)) (2.0.4)
Requirement already satisfied: mccabe in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmpdldz0_6u.txt (line 23)) (0.6.1)
Requirement already satisfied: isort>=4.2.5 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmpdldz0_6u.txt (line 23)) (4.3.4)
Requirement already satisfied: pluggy>=0.7 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpdldz0_6u.txt (line 24)) (0.7.1)
Requirement already satisfied: more-itertools>=4.0.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpdldz0_6u.txt (line 24)) (4.3.0)
Requirement already satisfied: atomicwrites>=1.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpdldz0_6u.txt (line 24)) (1.2.1)
Requirement already satisfied: attrs>=17.4.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpdldz0_6u.txt (line 24)) (18.2.0)
Requirement already satisfied: py>=1.5.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpdldz0_6u.txt (line 24)) (1.6.0)
Requirement already satisfied: idna<2.8,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpdldz0_6u.txt (line 27)) (2.7)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpdldz0_6u.txt (line 27)) (2018.8.24)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpdldz0_6u.txt (line 27)) (3.0.4)
Requirement already satisfied: urllib3<1.24,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpdldz0_6u.txt (line 27)) (1.23)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpdldz0_6u.txt (line 30)) (2.6.0)
Requirement already satisfied: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpdldz0_6u.txt (line 30)) (2.2.0)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpdldz0_6u.txt (line 30)) (0.7.11)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpdldz0_6u.txt (line 30)) (1.2.1)
Requirement already satisfied: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpdldz0_6u.txt (line 30)) (1.1.0)
Requirement already satisfied: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpdldz0_6u.txt (line 30)) (1.1.0)
Requirement already satisfied: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpdldz0_6u.txt (line 30)) (0.14)
Requirement already satisfied: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpdldz0_6u.txt (line 33)) (0.1.3)
Requirement already satisfied: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpdldz0_6u.txt (line 33)) (0.21)
Requirement already satisfied: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpdldz0_6u.txt (line 33)) (0.2.1)
Requirement already satisfied: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->-r /tmp/tmpdldz0_6u.txt (line 34)) (2.0.0)
Requirement already satisfied: requests-toolbelt>=0.8.0 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpdldz0_6u.txt (line 35)) (0.8.0)
Requirement already satisfied: tqdm>=4.14 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpdldz0_6u.txt (line 35)) (4.26.0)
Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpdldz0_6u.txt (line 35)) (1.4.2)
Requirement already satisfied: humanfriendly>=2.1 in /usr/local/lib/python3.6/site-packages (from capturer->-r /tmp/tmpdldz0_6u.txt (line 38)) (4.16.1)
Requirement already satisfied: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.0.1)
Requirement already satisfied: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.4)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.2.11)
Requirement already satisfied: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.3.9)
Requirement already satisfied: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.7.5)
Requirement already satisfied: pandas in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.23.4)
Requirement already satisfied: lml>=0.0.2 in /usr/local/lib/python3.6/site-packages (from pyexcel-io>=0.5.9.1->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.0.4)
Requirement already satisfied: texttable>=0.8.1 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.4.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.0.1)
Requirement already satisfied: pytz in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (2018.5)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.10.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (2.2.0)
Requirement already satisfied: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.1.0)
Requirement already satisfied: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.16.0)
Requirement already satisfied: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (1.4.3)
Requirement already satisfied: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpdldz0_6u.txt (line 12)) (0.10.0)
Requirement already satisfied: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->-r /tmp/tmpdldz0_6u.txt (line 13)) (2.0.4)
Requirement already satisfied: wrapt<2,>=1 in /usr/local/lib/python3.6/site-packages (from Deprecated->pygithub->-r /tmp/tmpdldz0_6u.txt (line 22)) (1.10.11)
Requirement already satisfied: typed-ast; python_version < "3.7" and implementation_name == "cpython" in /usr/local/lib/python3.6/site-packages (from astroid>=2.0.0->pylint>=2.1.1->-r /tmp/tmpdldz0_6u.txt (line 23)) (1.1.0)
Requirement already satisfied: lazy-object-proxy in /usr/local/lib/python3.6/site-packages (from astroid>=2.0.0->pylint>=2.1.1->-r /tmp/tmpdldz0_6u.txt (line 23)) (1.3.1)
Requirement already satisfied: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->-r /tmp/tmpdldz0_6u.txt (line 33)) (1.0.5)
Requirement already satisfied: setuptools in /usr/local/lib/python3.6/site-packages (40.3.0)
Requirement already satisfied: pip in /usr/local/lib/python3.6/site-packages (18.0)
Requirement already satisfied: abduct in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 2)) (2.0.0)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 3)) (3.0.0)
Requirement already satisfied: click in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 4)) (6.7)
Requirement already satisfied: configobj in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 6)) (4.5.1)
Requirement already satisfied: coveralls in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 7)) (1.5.0)
Requirement already satisfied: enum34 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 8)) (1.1.6)
Requirement already satisfied: ftputil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 9)) (3.4)
Requirement already satisfied: pkg_utils[all] from git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 10)) (0.0.3)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 from git+https://github.com/KarrLab/sphinxcontrib-googleanalytics.git#egg=sphinxcontrib_googleanalytics >= 0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 11)) (0.1.1)
Requirement already satisfied: wc_utils[all] from git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 12)) (0.0.1a5)
Requirement already satisfied: gitpython in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 13)) (2.1.11)
Requirement already satisfied: graphviz in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 14)) (0.9)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 15)) (2.10)
Requirement already satisfied: mock in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 16)) (2.0.0)
Requirement already satisfied: natsort in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 17)) (5.4.1)
Requirement already satisfied: networkx in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 18)) (2.1)
Requirement already satisfied: nose in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 19)) (1.3.7)
Requirement already satisfied: pip>=18.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 20)) (18.0)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 21)) (2.0.3)
Requirement already satisfied: pygithub in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 22)) (1.43.2)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 23)) (2.1.1)
Requirement already satisfied: pytest in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 24)) (3.8.0)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 25)) (2.7.3)
Requirement already satisfied: pyyaml in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 26)) (3.13)
Requirement already satisfied: requests in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 27)) (2.19.1)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 28)) (40.3.0)
Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 29)) (1.11.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 30)) (1.8.0)
Requirement already satisfied: sphinx_rtd_theme in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 31)) (0.4.1)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 32)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 33)) (0.4.0)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 34)) (4.2.0)
Requirement already satisfied: twine in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 35)) (1.11.0)
Requirement already satisfied: wheel in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 36)) (0.31.1)
Requirement already satisfied: whichcraft in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 37)) (0.4.1)
Requirement already satisfied: capturer in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpg076fsxa.txt (line 38)) (2.4)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->-r /tmp/tmpg076fsxa.txt (line 1)) (0.5.5)
Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.6/site-packages (from coveralls->-r /tmp/tmpg076fsxa.txt (line 7)) (0.6.2)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpg076fsxa.txt (line 10)) (0.2.0)
Requirement already satisfied: glob2 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpg076fsxa.txt (line 10)) (0.6)
Requirement already satisfied: configparser in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpg076fsxa.txt (line 10)) (3.5.0)
Requirement already satisfied: pypandoc; extra == "all" in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpg076fsxa.txt (line 10)) (1.4)
Requirement already satisfied: diskcache in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (3.0.6)
Requirement already satisfied: pyexcel-io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.5.9.1)
Requirement already satisfied: openpyxl in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (2.5.7)
Requirement already satisfied: pint in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.8.1)
Requirement already satisfied: log in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (2016.10.12)
Requirement already satisfied: mendeleev in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.4.3)
Requirement already satisfied: numpy in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.15.1)
Requirement already satisfied: pronto>=0.12.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.12.1)
Requirement already satisfied: qualname in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.1.0)
Requirement already satisfied: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.5.9.1)
Requirement already satisfied: quilt; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (2.9.11)
Requirement already satisfied: matplotlib; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (2.2.3)
Requirement already satisfied: scipy; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.1.0)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->-r /tmp/tmpg076fsxa.txt (line 13)) (2.0.4)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from jinja2->-r /tmp/tmpg076fsxa.txt (line 15)) (1.0)
Requirement already satisfied: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->-r /tmp/tmpg076fsxa.txt (line 16)) (4.2.0)
Requirement already satisfied: decorator>=4.1.0 in /usr/local/lib/python3.6/site-packages (from networkx->-r /tmp/tmpg076fsxa.txt (line 18)) (4.3.0)
Requirement already satisfied: packaging in /usr/local/lib/python3.6/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmpg076fsxa.txt (line 21)) (17.1)
Requirement already satisfied: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmpg076fsxa.txt (line 22)) (1.2.3)
Requirement already satisfied: pyjwt in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmpg076fsxa.txt (line 22)) (1.6.4)
Requirement already satisfied: mccabe in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmpg076fsxa.txt (line 23)) (0.6.1)
Requirement already satisfied: isort>=4.2.5 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmpg076fsxa.txt (line 23)) (4.3.4)
Requirement already satisfied: astroid>=2.0.0 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmpg076fsxa.txt (line 23)) (2.0.4)
Requirement already satisfied: more-itertools>=4.0.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpg076fsxa.txt (line 24)) (4.3.0)
Requirement already satisfied: attrs>=17.4.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpg076fsxa.txt (line 24)) (18.2.0)
Requirement already satisfied: pluggy>=0.7 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpg076fsxa.txt (line 24)) (0.7.1)
Requirement already satisfied: atomicwrites>=1.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpg076fsxa.txt (line 24)) (1.2.1)
Requirement already satisfied: py>=1.5.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmpg076fsxa.txt (line 24)) (1.6.0)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpg076fsxa.txt (line 27)) (2018.8.24)
Requirement already satisfied: idna<2.8,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpg076fsxa.txt (line 27)) (2.7)
Requirement already satisfied: urllib3<1.24,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpg076fsxa.txt (line 27)) (1.23)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpg076fsxa.txt (line 27)) (3.0.4)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpg076fsxa.txt (line 30)) (1.2.1)
Requirement already satisfied: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpg076fsxa.txt (line 30)) (2.2.0)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpg076fsxa.txt (line 30)) (2.6.0)
Requirement already satisfied: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpg076fsxa.txt (line 30)) (1.1.0)
Requirement already satisfied: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpg076fsxa.txt (line 30)) (1.1.0)
Requirement already satisfied: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpg076fsxa.txt (line 30)) (0.14)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpg076fsxa.txt (line 30)) (0.7.11)
Requirement already satisfied: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpg076fsxa.txt (line 33)) (0.1.3)
Requirement already satisfied: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpg076fsxa.txt (line 33)) (0.21)
Requirement already satisfied: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpg076fsxa.txt (line 33)) (0.2.1)
Requirement already satisfied: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->-r /tmp/tmpg076fsxa.txt (line 34)) (2.0.0)
Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpg076fsxa.txt (line 35)) (1.4.2)
Requirement already satisfied: requests-toolbelt>=0.8.0 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpg076fsxa.txt (line 35)) (0.8.0)
Requirement already satisfied: tqdm>=4.14 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpg076fsxa.txt (line 35)) (4.26.0)
Requirement already satisfied: humanfriendly>=2.1 in /usr/local/lib/python3.6/site-packages (from capturer->-r /tmp/tmpg076fsxa.txt (line 38)) (4.16.1)
Requirement already satisfied: lml>=0.0.2 in /usr/local/lib/python3.6/site-packages (from pyexcel-io>=0.5.9.1->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.0.4)
Requirement already satisfied: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.4)
Requirement already satisfied: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.0.1)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.2.11)
Requirement already satisfied: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.7.5)
Requirement already satisfied: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.3.9)
Requirement already satisfied: pandas in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.23.4)
Requirement already satisfied: texttable>=0.8.1 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.4.0)
Requirement already satisfied: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.16.0)
Requirement already satisfied: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.10.0)
Requirement already satisfied: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.1.0)
Requirement already satisfied: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.4.3)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (1.0.1)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (0.10.0)
Requirement already satisfied: pytz in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (2018.5)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpg076fsxa.txt (line 12)) (2.2.0)
Requirement already satisfied: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->-r /tmp/tmpg076fsxa.txt (line 13)) (2.0.4)
Requirement already satisfied: wrapt<2,>=1 in /usr/local/lib/python3.6/site-packages (from Deprecated->pygithub->-r /tmp/tmpg076fsxa.txt (line 22)) (1.10.11)
Requirement already satisfied: typed-ast; python_version < "3.7" and implementation_name == "cpython" in /usr/local/lib/python3.6/site-packages (from astroid>=2.0.0->pylint>=2.1.1->-r /tmp/tmpg076fsxa.txt (line 23)) (1.1.0)
Requirement already satisfied: lazy-object-proxy in /usr/local/lib/python3.6/site-packages (from astroid>=2.0.0->pylint>=2.1.1->-r /tmp/tmpg076fsxa.txt (line 23)) (1.3.1)
Requirement already satisfied: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->-r /tmp/tmpg076fsxa.txt (line 33)) (1.0.5)
|
|---|
| Standard error | You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_requirements_n... |
project/tests/test_core.py |
514 |
Pass |
3.529 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Requirement already satisfied: setuptools in /usr/local/lib/python3.6/site-packages (40.3.0)
Requirement already satisfied: pip in /usr/local/lib/python3.6/site-packages (18.0)
Requirement already satisfied: abduct in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 2)) (2.0.0)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 3)) (3.0.0)
Requirement already satisfied: click in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 4)) (6.7)
Requirement already satisfied: configobj in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 6)) (4.5.1)
Requirement already satisfied: coveralls in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 7)) (1.5.0)
Requirement already satisfied: enum34 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 8)) (1.1.6)
Requirement already satisfied: ftputil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 9)) (3.4)
Requirement already satisfied: pkg_utils[all] from git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 10)) (0.0.3)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 from git+https://github.com/KarrLab/sphinxcontrib-googleanalytics.git#egg=sphinxcontrib_googleanalytics >= 0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 11)) (0.1.1)
Requirement already satisfied: wc_utils[all] from git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 12)) (0.0.1a5)
Requirement already satisfied: gitpython in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 13)) (2.1.11)
Requirement already satisfied: graphviz in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 14)) (0.9)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 15)) (2.10)
Requirement already satisfied: mock in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 16)) (2.0.0)
Requirement already satisfied: natsort in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 17)) (5.4.1)
Requirement already satisfied: networkx in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 18)) (2.1)
Requirement already satisfied: nose in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 19)) (1.3.7)
Requirement already satisfied: pip>=18.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 20)) (18.0)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 21)) (2.0.3)
Requirement already satisfied: pygithub in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 22)) (1.43.2)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 23)) (2.1.1)
Requirement already satisfied: pytest in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 24)) (3.8.0)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 25)) (2.7.3)
Requirement already satisfied: pyyaml in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 26)) (3.13)
Requirement already satisfied: requests in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 27)) (2.19.1)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 28)) (40.3.0)
Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 29)) (1.11.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 30)) (1.8.0)
Requirement already satisfied: sphinx_rtd_theme in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 31)) (0.4.1)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 32)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 33)) (0.4.0)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 34)) (4.2.0)
Requirement already satisfied: twine in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 35)) (1.11.0)
Requirement already satisfied: wheel in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 36)) (0.31.1)
Requirement already satisfied: whichcraft in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 37)) (0.4.1)
Requirement already satisfied: capturer in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptqw2omyk.txt (line 38)) (2.4)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->-r /tmp/tmptqw2omyk.txt (line 1)) (0.5.5)
Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.6/site-packages (from coveralls->-r /tmp/tmptqw2omyk.txt (line 7)) (0.6.2)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmptqw2omyk.txt (line 10)) (0.2.0)
Requirement already satisfied: configparser in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmptqw2omyk.txt (line 10)) (3.5.0)
Requirement already satisfied: glob2 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmptqw2omyk.txt (line 10)) (0.6)
Requirement already satisfied: pypandoc; extra == "all" in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmptqw2omyk.txt (line 10)) (1.4)
Requirement already satisfied: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.5.9.1)
Requirement already satisfied: openpyxl in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (2.5.7)
Requirement already satisfied: numpy in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.15.1)
Requirement already satisfied: pint in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.8.1)
Requirement already satisfied: pronto>=0.12.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.12.1)
Requirement already satisfied: log in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (2016.10.12)
Requirement already satisfied: qualname in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.1.0)
Requirement already satisfied: diskcache in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (3.0.6)
Requirement already satisfied: pyexcel-io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.5.9.1)
Requirement already satisfied: mendeleev in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.4.3)
Requirement already satisfied: scipy; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.1.0)
Requirement already satisfied: matplotlib; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (2.2.3)
Requirement already satisfied: quilt; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (2.9.11)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->-r /tmp/tmptqw2omyk.txt (line 13)) (2.0.4)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from jinja2->-r /tmp/tmptqw2omyk.txt (line 15)) (1.0)
Requirement already satisfied: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->-r /tmp/tmptqw2omyk.txt (line 16)) (4.2.0)
Requirement already satisfied: decorator>=4.1.0 in /usr/local/lib/python3.6/site-packages (from networkx->-r /tmp/tmptqw2omyk.txt (line 18)) (4.3.0)
Requirement already satisfied: packaging in /usr/local/lib/python3.6/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmptqw2omyk.txt (line 21)) (17.1)
Requirement already satisfied: pyjwt in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmptqw2omyk.txt (line 22)) (1.6.4)
Requirement already satisfied: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmptqw2omyk.txt (line 22)) (1.2.3)
Requirement already satisfied: astroid>=2.0.0 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmptqw2omyk.txt (line 23)) (2.0.4)
Requirement already satisfied: mccabe in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmptqw2omyk.txt (line 23)) (0.6.1)
Requirement already satisfied: isort>=4.2.5 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmptqw2omyk.txt (line 23)) (4.3.4)
Requirement already satisfied: more-itertools>=4.0.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptqw2omyk.txt (line 24)) (4.3.0)
Requirement already satisfied: pluggy>=0.7 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptqw2omyk.txt (line 24)) (0.7.1)
Requirement already satisfied: py>=1.5.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptqw2omyk.txt (line 24)) (1.6.0)
Requirement already satisfied: attrs>=17.4.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptqw2omyk.txt (line 24)) (18.2.0)
Requirement already satisfied: atomicwrites>=1.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptqw2omyk.txt (line 24)) (1.2.1)
Requirement already satisfied: urllib3<1.24,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptqw2omyk.txt (line 27)) (1.23)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptqw2omyk.txt (line 27)) (3.0.4)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptqw2omyk.txt (line 27)) (2018.8.24)
Requirement already satisfied: idna<2.8,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptqw2omyk.txt (line 27)) (2.7)
Requirement already satisfied: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptqw2omyk.txt (line 30)) (0.14)
Requirement already satisfied: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptqw2omyk.txt (line 30)) (1.1.0)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptqw2omyk.txt (line 30)) (0.7.11)
Requirement already satisfied: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptqw2omyk.txt (line 30)) (1.1.0)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptqw2omyk.txt (line 30)) (2.6.0)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptqw2omyk.txt (line 30)) (1.2.1)
Requirement already satisfied: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptqw2omyk.txt (line 30)) (2.2.0)
Requirement already satisfied: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmptqw2omyk.txt (line 33)) (0.21)
Requirement already satisfied: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmptqw2omyk.txt (line 33)) (0.2.1)
Requirement already satisfied: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmptqw2omyk.txt (line 33)) (0.1.3)
Requirement already satisfied: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->-r /tmp/tmptqw2omyk.txt (line 34)) (2.0.0)
Requirement already satisfied: requests-toolbelt>=0.8.0 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmptqw2omyk.txt (line 35)) (0.8.0)
Requirement already satisfied: tqdm>=4.14 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmptqw2omyk.txt (line 35)) (4.26.0)
Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmptqw2omyk.txt (line 35)) (1.4.2)
Requirement already satisfied: humanfriendly>=2.1 in /usr/local/lib/python3.6/site-packages (from capturer->-r /tmp/tmptqw2omyk.txt (line 38)) (4.16.1)
Requirement already satisfied: texttable>=0.8.1 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.4.0)
Requirement already satisfied: lml>=0.0.2 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.0.4)
Requirement already satisfied: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.0.1)
Requirement already satisfied: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.4)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.2.11)
Requirement already satisfied: pandas in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.23.4)
Requirement already satisfied: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.7.5)
Requirement already satisfied: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.3.9)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.0.1)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (2.2.0)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.10.0)
Requirement already satisfied: pytz in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (2018.5)
Requirement already satisfied: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.4.3)
Requirement already satisfied: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.10.0)
Requirement already satisfied: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (0.16.0)
Requirement already satisfied: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt; extra == "all"->wc_utils[all]->-r /tmp/tmptqw2omyk.txt (line 12)) (1.1.0)
Requirement already satisfied: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->-r /tmp/tmptqw2omyk.txt (line 13)) (2.0.4)
Requirement already satisfied: wrapt<2,>=1 in /usr/local/lib/python3.6/site-packages (from Deprecated->pygithub->-r /tmp/tmptqw2omyk.txt (line 22)) (1.10.11)
Requirement already satisfied: lazy-object-proxy in /usr/local/lib/python3.6/site-packages (from astroid>=2.0.0->pylint>=2.1.1->-r /tmp/tmptqw2omyk.txt (line 23)) (1.3.1)
Requirement already satisfied: typed-ast; python_version < "3.7" and implementation_name == "cpython" in /usr/local/lib/python3.6/site-packages (from astroid>=2.0.0->pylint>=2.1.1->-r /tmp/tmptqw2omyk.txt (line 23)) (1.1.0)
Requirement already satisfied: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->-r /tmp/tmptqw2omyk.txt (line 33)) (1.0.5)
|
|---|
| Standard error | You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_low_level_docker_commands |
project/tests/test_core.py |
701 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:700: <py._xmlgen.raw object at 0x7f8b12313940> |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_and_archive_reports |
project/tests/test_core.py |
1506 |
Pass |
26.954 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.01 seconds ===========================
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.0
Initializing Spelling Checker
making output directory...
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 8 source files that are out of date
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
generating indices... genindex py-modindex
writing additional pages... search
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in docs/_build/html.
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.0
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
pickling environment... done
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_and_archive_repor... |
project/tests/test_core.py |
1535 |
Pass |
11.425 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.02 seconds ===========================
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.0
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
pickling environment... done
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_documentation |
project/tests/test_core.py |
1788 |
Pass |
7.277 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.0
Initializing Spelling Checker
making output directory...
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 8 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
pickling environment... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
generating indices... genindex py-modindex
writing additional pages... search
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded.
The HTML pages are in docs/_build/html.
Running Sphinx v1.8.0
Initializing Spelling Checker
making output directory...
Ignoring wiki words
Ignoring acronyms
Ignoring Python builtins
Ignoring importable module names
Looking for custom word list in /root/project/docs/spelling_wordlist.txt
building [mo]: targets for 0 po files that are out of date
building [spelling]: all documents
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
index.rst:4:Karr:
index.rst:16:Pylint:
writing output... [ 37%] installation
installation.rst:5:Pre:
installation.rst:46:Karr:
writing output... [ 50%] source/karr_lab_build_utils
source/karr_lab_build_utils.rst:5:Subpackages:
source/karr_lab_build_utils.rst:12:Submodules:
source/karr_lab_build_utils.rst:15:karr:
source/karr_lab_build_utils.rst:15:utils:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:3:Karr:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:1:Pylint:
source/karr_lab_build_utils.rst:1:acyclic:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:1:webhook:
source/karr_lab_build_utils.rst:5:karrlab:
source/karr_lab_build_utils.rst:23:karr:
source/karr_lab_build_utils.rst:23:utils:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:3:Karr:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:8:pytest:
source/karr_lab_build_utils.rst:32:sha:
source/karr_lab_build_utils.rst:74:apidoc:
source/karr_lab_build_utils.rst:146:hostname:
source/karr_lab_build_utils.rst:248:pytest:
source/karr_lab_build_utils.rst:284:apidoc:
source/karr_lab_build_utils.rst:1:Pylint:
source/karr_lab_build_utils.rst:6:Reimported:
source/karr_lab_build_utils.rst:7:init:
source/karr_lab_build_utils.rst:7:py:
source/karr_lab_build_utils.rst:Pylint:
source/karr_lab_build_utils.rst:Pylist:
source/karr_lab_build_utils.rst:rcfile:
source/karr_lab_build_utils.rst:Pylint:
source/karr_lab_build_utils.rst:1:acyclic:
source/karr_lab_build_utils.rst:acyclic:
source/karr_lab_build_utils.rst:1:webhook:
source/karr_lab_build_utils.rst:10:webhook:
source/karr_lab_build_utils.rst:9:karrlab:
source/karr_lab_build_utils.rst:14:karrlab:
source/karr_lab_build_utils.rst:str:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:16:untriggered:
source/karr_lab_build_utils.rst:occurences:
source/karr_lab_build_utils.rst:Karr:
source/karr_lab_build_utils.rst:1:configs:
source/karr_lab_build_utils.rst:1:configs:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:6:coveragerc:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:circleci:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:str:
source/karr_lab_build_utils.rst:Karr:
source/karr_lab_build_utils.rst:9:untriggered:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:Karr:
writing output... [ 62%] source/karr_lab_build_utils.config
source/karr_lab_build_utils.config.rst:2:karr:
source/karr_lab_build_utils.config.rst:2:utils:
source/karr_lab_build_utils.config.rst:2:config:
source/karr_lab_build_utils.config.rst:5:Submodules:
source/karr_lab_build_utils.config.rst:8:karr:
source/karr_lab_build_utils.config.rst:8:utils:
source/karr_lab_build_utils.config.rst:8:config:
source/karr_lab_build_utils.config.rst:3:Karr:
source/karr_lab_build_utils.config.rst:5:Karr:
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
tutorial_admins.rst:40:Pylint:
tutorial_admins.rst:43:Pylint:
tutorial_admins.rst:143:pypirc:
writing output... [100%] tutorial_developers
tutorial_developers.rst:105:subdirectory:
tutorial_developers.rst:105:subdirectory:
Spelling checker messages written to /root/project/docs/_build/spelling/output.txt
build succeeded, 7 warnings.
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.0
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
pickling environment... done
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_documentation_error |
project/tests/test_core.py |
1806 |
Pass |
0.979 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
|
|---|
| Standard error |
Exception occurred:
File "/usr/local/lib/python3.6/site-packages/mock/mock.py", line 1118, in _mock_call
raise effect
Exception: Test exception
The full traceback has been saved in /tmp/sphinx-err-_pe_1_km.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_no_build_num |
project/tests/test_core.py |
2551 |
Pass |
1.089 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_raw_cli |
project/tests/test_core.py |
2532 |
Pass |
0.138 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | usage: karr_lab_build_utils [-h] [-d] [-q] [-v]
{upload-package-to-pypi,find-unused-requirements,find-missing-requirements,analyze-package,visualize-package-dependencies,are-package-dependencies-acyclic,compile-downstream-dependencies,make-documentation,upload-coverage-report-to-code-climate,upload-coverage-report-to-coveralls,archive-coverage-report,combine-coverage-reports,make-and-archive-reports,do-post-test-tasks,create-code-climate-github-webhook,delete-circleci-environment-variable,set-circleci-environment-variable,get-circleci-environment-variables,follow-circleci-build,docker,run-tests,download-install-package-config-files,create-documentation-template,setup-repository,create-repository,create-package,archive-test-report,install-requirements,upgrade-karr-lab-packages}
...
Karr Lab build utilities
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{upload-package-to-pypi,find-unused-requirements,find-missing-requirements,analyze-package,visualize-package-dependencies,are-package-dependencies-acyclic,compile-downstream-dependencies,make-documentation,upload-coverage-report-to-code-climate,upload-coverage-report-to-coveralls,archive-coverage-report,combine-coverage-reports,make-and-archive-reports,do-post-test-tasks,create-code-climate-github-webhook,delete-circleci-environment-variable,set-circleci-environment-variable,get-circleci-environment-variables,follow-circleci-build,docker,run-tests,download-install-package-config-files,create-documentation-template,setup-repository,create-repository,create-package,archive-test-report,install-requirements,upgrade-karr-lab-packages}
upload-package-to-pypi
upload-package-to-pypi controller
find-unused-requirements
find-unused-requirements controller
find-missing-requirements
find-missing-requirements controller
analyze-package analyze-package controller
visualize-package-dependencies
visualize-package-dependencies controller
are-package-dependencies-acyclic
are-package-dependencies-acyclic controller
compile-downstream-dependencies
compile-downstream-dependencies controller
make-documentation make-documentation controller
upload-coverage-report-to-code-climate
upload-coverage-report-to-code-climate controller
upload-coverage-report-to-coveralls
upload-coverage-report-to-coveralls controller
archive-coverage-report
archive-coverage-report controller
combine-coverage-reports
combine-coverage-reports controller
make-and-archive-reports
make-and-archive-reports controller
do-post-test-tasks do-post-test-tasks controller
create-code-climate-github-webhook
create-code-climate-github-webhook controller
delete-circleci-environment-variable
delete-circleci-environment-variable controller
set-circleci-environment-variable
set-circleci-environment-variable controller
get-circleci-environment-variables
get-circleci-environment-variables controller
follow-circleci-build
follow-circleci-build controller
docker docker controller
run-tests run-tests controller
download-install-package-config-files
download-install-package-config-files controller
create-documentation-template
create-documentation-template controller
setup-repository setup-repository controller
create-repository create-repository controller
create-package create-package controller
archive-test-report
Archive test report
install-requirements
Install requirements
upgrade-karr-lab-packages
Upgrade the packages from the Karr Lab's GitHub
organization
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_method_and_capture... |
project/tests/test_core.py |
2561 |
Pass |
0.422 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests |
project/tests/test_core.py |
560 |
Pass |
1.935 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
---------- generated xml file: /tmp/tmp8pm8s5yw/latest.0-1.3.6.5.xml -----------
=========================== 1 passed in 0.01 seconds ===========================
============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.24 seconds ===========================
============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | .
----------------------------------------------------------------------
Ran 1 test in 0.001s
OK
Coverage.py warning: No data was collected. (no-data-collected)
|
|---|
|
|
project.tests.test_core.TestCircleCi |
test_run_tests_circleci |
project/tests/test_core.py |
2608 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
|---|
| Details | project/tests/test_core.py:2607: <py._xmlgen.raw object at 0x7f8b182013c8> |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestCircleCi |
test_run_tests_circleci_wit... |
project/tests/test_core.py |
2620 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
|---|
| Details | project/tests/test_core.py:2619: <py._xmlgen.raw object at 0x7f8b18204908> |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_default_path |
project/tests/test_core.py |
615 |
Pass |
0.231 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_docker |
project/tests/test_core.py |
723 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:722: <py._xmlgen.raw object at 0x7f8b10751710> |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_error |
project/tests/test_core.py |
637 |
Pass |
0.207 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_multiple_wor... |
project/tests/test_core.py |
611 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Todo |
|---|
| Details | project/tests/test_core.py:610: <py._xmlgen.raw object at 0x7f8b12216278> |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_unsupported_env |
project/tests/test_core.py |
769 |
Pass |
0.206 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_with_test_pa... |
project/tests/test_core.py |
621 |
Pass |
0.268 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_with_verbose |
project/tests/test_core.py |
628 |
Pass |
0.254 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py .
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | .
----------------------------------------------------------------------
Ran 1 test in 0.001s
OK
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1485 |
Pass |
0.202 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1229 |
Pass |
0.415 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
974 |
Pass |
0.212 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
897 |
Pass |
0.401 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1141 |
Pass |
0.404 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1063 |
Pass |
0.246 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1381 |
Pass |
0.422 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1321 |
Pass |
0.419 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_setup_repository |
project/tests/test_core.py |
302 |
Pass |
0.577 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_set_circleci_environme... |
project/tests/test_core.py |
416 |
Pass |
1.539 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2238 |
Pass |
0.630 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2304 |
Pass |
0.205 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2068 |
Pass |
0.396 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2086 |
Pass |
0.412 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2179 |
Pass |
0.424 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2038 |
Pass |
0.397 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2124 |
Pass |
0.400 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_unsupported_test_runner |
project/tests/test_core.py |
2544 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upgrade_karr_lab_packages |
project/tests/test_core.py |
525 |
Pass |
12.757 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Collecting pkg-utils[all] from git+https://github.com/KarrLab/pkg_utils.git#egg=pkg-utils[all]
Cloning https://github.com/KarrLab/pkg_utils.git to /tmp/pip-install-32_q9o0_/pkg-utils
Collecting wc-utils[all] from git+https://github.com/KarrLab/wc_utils.git#egg=wc-utils[all]
Cloning https://github.com/KarrLab/wc_utils.git to /tmp/pip-install-32_q9o0_/wc-utils
Requirement already satisfied, skipping upgrade: configparser in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (3.5.0)
Requirement already satisfied, skipping upgrade: glob2 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.6)
Requirement already satisfied, skipping upgrade: pip>=18.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (18.0)
Requirement already satisfied, skipping upgrade: requirements_parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.2.0)
Requirement already satisfied, skipping upgrade: setuptools in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (40.3.0)
Requirement already satisfied, skipping upgrade: pypandoc in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.8.0)
Requirement already satisfied, skipping upgrade: sphinx_rtd_theme in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (4.2.0)
Requirement already satisfied, skipping upgrade: abduct in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: attrdict in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: configobj in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (5.0.6)
Requirement already satisfied, skipping upgrade: diskcache in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.0.6)
Requirement already satisfied, skipping upgrade: enum34 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.1.6)
Requirement already satisfied, skipping upgrade: gitpython in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.1.11)
Requirement already satisfied, skipping upgrade: log in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2016.10.12)
Requirement already satisfied, skipping upgrade: mendeleev in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.4.3)
Requirement already satisfied, skipping upgrade: numpy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.15.1)
Requirement already satisfied, skipping upgrade: openpyxl in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.5.7)
Requirement already satisfied, skipping upgrade: pint in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.8.1)
Requirement already satisfied, skipping upgrade: pronto>=0.12.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.12.1)
Requirement already satisfied, skipping upgrade: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.9.1)
Requirement already satisfied, skipping upgrade: pyexcel_io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.9.1)
Requirement already satisfied, skipping upgrade: pyyaml in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.13)
Requirement already satisfied, skipping upgrade: qualname in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.1.0)
Requirement already satisfied, skipping upgrade: requests in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.19.1)
Requirement already satisfied, skipping upgrade: six in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.11.0)
Requirement already satisfied, skipping upgrade: capturer in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: matplotlib in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.2.3)
Requirement already satisfied, skipping upgrade: mock in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: quilt in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.9.11)
Requirement already satisfied, skipping upgrade: scipy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: wheel>=0.25.0 in /usr/local/lib/python3.6/site-packages (from pypandoc->pkg-utils[all]) (0.31.1)
Requirement already satisfied, skipping upgrade: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.7.11)
Requirement already satisfied, skipping upgrade: packaging in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (17.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.2.0)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.14)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.6.0)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.10)
Requirement already satisfied, skipping upgrade: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.21)
Requirement already satisfied, skipping upgrade: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.2.1)
Requirement already satisfied, skipping upgrade: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->wc-utils[all]) (0.5.5)
Requirement already satisfied, skipping upgrade: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->wc-utils[all]) (2.0.4)
Requirement already satisfied, skipping upgrade: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (1.2.11)
Requirement already satisfied, skipping upgrade: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.3.9)
Requirement already satisfied, skipping upgrade: pandas in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.23.4)
Requirement already satisfied, skipping upgrade: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.7.5)
Requirement already satisfied, skipping upgrade: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl->wc-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: lml>=0.0.2 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (0.0.4)
Requirement already satisfied, skipping upgrade: texttable>=0.8.1 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (1.4.0)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (3.0.4)
Requirement already satisfied, skipping upgrade: idna<2.8,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2.7)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2018.8.24)
Requirement already satisfied, skipping upgrade: urllib3<1.24,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (1.23)
Requirement already satisfied, skipping upgrade: humanfriendly>=2.1 in /usr/local/lib/python3.6/site-packages (from capturer->wc-utils[all]) (4.16.1)
Requirement already satisfied, skipping upgrade: pytz in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2018.5)
Requirement already satisfied, skipping upgrade: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (0.10.0)
Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.2.0)
Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.7.3)
Requirement already satisfied, skipping upgrade: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->wc-utils[all]) (4.2.0)
Requirement already satisfied, skipping upgrade: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.10.0)
Requirement already satisfied, skipping upgrade: tqdm>=4.11.2 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (4.26.0)
Requirement already satisfied, skipping upgrade: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.4.3)
Requirement already satisfied, skipping upgrade: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.16.0)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from Jinja2>=2.3->sphinx>=1.8->pkg-utils[all]) (1.0)
Requirement already satisfied, skipping upgrade: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->pkg-utils[all]) (1.0.5)
Requirement already satisfied, skipping upgrade: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->wc-utils[all]) (2.0.4)
Building wheels for collected packages: pkg-utils, wc-utils
Running setup.py bdist_wheel for pkg-utils: started
Running setup.py bdist_wheel for pkg-utils: finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-eshguyb5/wheels/57/3a/20/6f82ae6d2e86c270594fde48c8eb5bd0f1c901e3afc411cd4f
Running setup.py bdist_wheel for wc-utils: started
Running setup.py bdist_wheel for wc-utils: finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-eshguyb5/wheels/33/7d/4c/660999fd6582d65839f94335bf2e65501591e27798b0871c35
Successfully built pkg-utils wc-utils
Installing collected packages: pkg-utils, wc-utils
Found existing installation: pkg-utils 0.0.3
Uninstalling pkg-utils-0.0.3:
Successfully uninstalled pkg-utils-0.0.3
Found existing installation: wc-utils 0.0.1a5
Uninstalling wc-utils-0.0.1a5:
Successfully uninstalled wc-utils-0.0.1a5
Successfully installed pkg-utils-0.0.3 wc-utils-0.0.1a5
Collecting pkg-utils[all] from git+https://github.com/KarrLab/pkg_utils.git#egg=pkg-utils[all]
Cloning https://github.com/KarrLab/pkg_utils.git to /tmp/pip-install-1uzegu2b/pkg-utils
Collecting wc-utils[all] from git+https://github.com/KarrLab/wc_utils.git#egg=wc-utils[all]
Cloning https://github.com/KarrLab/wc_utils.git to /tmp/pip-install-1uzegu2b/wc-utils
Requirement already satisfied, skipping upgrade: configparser in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (3.5.0)
Requirement already satisfied, skipping upgrade: glob2 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.6)
Requirement already satisfied, skipping upgrade: pip>=18.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (18.0)
Requirement already satisfied, skipping upgrade: requirements_parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.2.0)
Requirement already satisfied, skipping upgrade: setuptools in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (40.3.0)
Requirement already satisfied, skipping upgrade: pypandoc in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.8.0)
Requirement already satisfied, skipping upgrade: sphinx_rtd_theme in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (4.2.0)
Requirement already satisfied, skipping upgrade: abduct in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: attrdict in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: configobj in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (5.0.6)
Requirement already satisfied, skipping upgrade: diskcache in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.0.6)
Requirement already satisfied, skipping upgrade: enum34 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.1.6)
Requirement already satisfied, skipping upgrade: gitpython in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.1.11)
Requirement already satisfied, skipping upgrade: log in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2016.10.12)
Requirement already satisfied, skipping upgrade: mendeleev in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.4.3)
Requirement already satisfied, skipping upgrade: numpy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.15.1)
Requirement already satisfied, skipping upgrade: openpyxl in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.5.7)
Requirement already satisfied, skipping upgrade: pint in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.8.1)
Requirement already satisfied, skipping upgrade: pronto>=0.12.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.12.1)
Requirement already satisfied, skipping upgrade: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.9.1)
Requirement already satisfied, skipping upgrade: pyexcel_io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.9.1)
Requirement already satisfied, skipping upgrade: pyyaml in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.13)
Requirement already satisfied, skipping upgrade: qualname in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.1.0)
Requirement already satisfied, skipping upgrade: requests in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.19.1)
Requirement already satisfied, skipping upgrade: six in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.11.0)
Requirement already satisfied, skipping upgrade: capturer in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: matplotlib in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.2.3)
Requirement already satisfied, skipping upgrade: mock in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: quilt in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.9.11)
Requirement already satisfied, skipping upgrade: scipy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: wheel>=0.25.0 in /usr/local/lib/python3.6/site-packages (from pypandoc->pkg-utils[all]) (0.31.1)
Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.7.11)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.10)
Requirement already satisfied, skipping upgrade: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.14)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.6.0)
Requirement already satisfied, skipping upgrade: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: packaging in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (17.1)
Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.2.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.2.1)
Requirement already satisfied, skipping upgrade: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.21)
Requirement already satisfied, skipping upgrade: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->wc-utils[all]) (0.5.5)
Requirement already satisfied, skipping upgrade: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->wc-utils[all]) (2.0.4)
Requirement already satisfied, skipping upgrade: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.7.5)
Requirement already satisfied, skipping upgrade: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (1.2.11)
Requirement already satisfied, skipping upgrade: pandas in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.23.4)
Requirement already satisfied, skipping upgrade: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.3.9)
Requirement already satisfied, skipping upgrade: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl->wc-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: lml>=0.0.2 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (0.0.4)
Requirement already satisfied, skipping upgrade: texttable>=0.8.1 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (1.4.0)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (3.0.4)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2018.8.24)
Requirement already satisfied, skipping upgrade: idna<2.8,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2.7)
Requirement already satisfied, skipping upgrade: urllib3<1.24,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (1.23)
Requirement already satisfied, skipping upgrade: humanfriendly>=2.1 in /usr/local/lib/python3.6/site-packages (from capturer->wc-utils[all]) (4.16.1)
Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (0.10.0)
Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.2.0)
Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.7.3)
Requirement already satisfied, skipping upgrade: pytz in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2018.5)
Requirement already satisfied, skipping upgrade: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->wc-utils[all]) (4.2.0)
Requirement already satisfied, skipping upgrade: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.10.0)
Requirement already satisfied, skipping upgrade: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.4.3)
Requirement already satisfied, skipping upgrade: tqdm>=4.11.2 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (4.26.0)
Requirement already satisfied, skipping upgrade: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.16.0)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from Jinja2>=2.3->sphinx>=1.8->pkg-utils[all]) (1.0)
Requirement already satisfied, skipping upgrade: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->pkg-utils[all]) (1.0.5)
Requirement already satisfied, skipping upgrade: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->wc-utils[all]) (2.0.4)
Building wheels for collected packages: pkg-utils, wc-utils
Running setup.py bdist_wheel for pkg-utils: started
Running setup.py bdist_wheel for pkg-utils: finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-lbkcqe0f/wheels/57/3a/20/6f82ae6d2e86c270594fde48c8eb5bd0f1c901e3afc411cd4f
Running setup.py bdist_wheel for wc-utils: started
Running setup.py bdist_wheel for wc-utils: finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-lbkcqe0f/wheels/33/7d/4c/660999fd6582d65839f94335bf2e65501591e27798b0871c35
Successfully built pkg-utils wc-utils
Installing collected packages: pkg-utils, wc-utils
Found existing installation: pkg-utils 0.0.3
Uninstalling pkg-utils-0.0.3:
Successfully uninstalled pkg-utils-0.0.3
Found existing installation: wc-utils 0.0.1a5
Uninstalling wc-utils-0.0.1a5:
Successfully uninstalled wc-utils-0.0.1a5
Successfully installed pkg-utils-0.0.3 wc-utils-0.0.1a5
|
|---|
| Standard error | DEPRECATION: Dependency Links processing has been deprecated and will be removed in a future release. You can find discussion regarding this at https://github.com/pypa/pip/issues/4187.
DEPRECATION: Dependency Links processing has been deprecated and will be removed in a future release. You can find discussion regarding this at https://github.com/pypa/pip/issues/4187.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
DEPRECATION: Dependency Links processing has been deprecated and will be removed in a future release. You can find discussion regarding this at https://github.com/pypa/pip/issues/4187.
DEPRECATION: Dependency Links processing has been deprecated and will be removed in a future release. You can find discussion regarding this at https://github.com/pypa/pip/issues/4187.
You are using pip version 18.0, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upgrade_requirements_k... |
project/tests/test_core.py |
536 |
Pass |
0.214 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1702 |
Pass |
1.860 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1726 |
Pass |
0.193 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1671 |
Pass |
1.609 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.5, pytest-3.8.0, py-1.6.0, pluggy-0.7.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
=========================== 1 passed in 0.01 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1694 |
Pass |
0.236 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_documentation_t... |
project/tests/test_core.py |
1819 |
Pass |
1.088 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_package_to_pypi |
project/tests/test_core.py |
2425 |
Pass |
21.655 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_visualize_package_depe... |
project/tests/test_core.py |
1991 |
Pass |
0.993 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__get_test_cases |
project/tests/test_core.py |
660 |
Pass |
0.366 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | project/tests/test_api.py::ApiTestCase::test
project/tests/test_core.py::TestKarrLabBuildUtils::test_BuildHelperError
project/tests/test_core.py::TestKarrLabBuildUtils::test__get_test_cases
project/tests/test_core.py::TestKarrLabBuildUtils::test__run_docker_command_capture_stdout
project/tests/test_core.py::TestKarrLabBuildUtils::test__run_docker_command_exception
project/tests/test_core.py::TestKarrLabBuildUtils::test_analyze_package
project/tests/test_core.py::TestKarrLabBuildUtils::test_archive_coverage_report
project/tests/test_core.py::TestKarrLabBuildUtils::test_archive_test_report
project/tests/test_core.py::TestKarrLabBuildUtils::test_archive_test_report_err
project/tests/test_core.py::TestKarrLabBuildUtils::test_archive_test_report_no_repo
project/tests/test_core.py::TestKarrLabBuildUtils::test_are_package_dependencies_acyclic
project/tests/test_core.py::TestKarrLabBuildUtils::test_combine_coverage_reports
project/tests/test_core.py::TestKarrLabBuildUtils::test_combine_coverage_reports_no_files
project/tests/test_core.py::TestKarrLabBuildUtils::test_compile_downstream_dependencies
project/tests/test_core.py::TestKarrLabBuildUtils::test_create_code_climate_github_webhook
project/tests/test_core.py::TestKarrLabBuildUtils::test_create_documentation_template
project/tests/test_core.py::TestKarrLabBuildUtils::test_create_documentation_template_error
project/tests/test_core.py::TestKarrLabBuildUtils::test_create_package
project/tests/test_core.py::TestKarrLabBuildUtils::test_create_repository
project/tests/test_core.py::TestKarrLabBuildUtils::test_delete_circleci_environment_variables
project/tests/test_core.py::TestKarrLabBuildUtils::test_do_post_test_tasks
project/tests/test_core.py::TestKarrLabBuildUtils::test_docker_help
project/tests/test_core.py::TestKarrLabBuildUtils::test_download_install_package_config_files
project/tests/test_core.py::TestKarrLabBuildUtils::test_download_package_config_files
project/tests/test_core.py::TestKarrLabBuildUtils::test_dummy_test
project/tests/test_core.py::TestKarrLabBuildUtils::test_find_missing_requirements
project/tests/test_core.py::TestKarrLabBuildUtils::test_find_unused_requirements
project/tests/test_core.py::TestKarrLabBuildUtils::test_follow_circleci_build
project/tests/test_core.py::TestKarrLabBuildUtils::test_follow_circleci_build_error
project/tests/test_core.py::TestKarrLabBuildUtils::test_get_circleci_environment_variables
project/tests/test_core.py::TestKarrLabBuildUtils::test_get_config
project/tests/test_core.py::TestKarrLabBuildUtils::test_get_test_results
project/tests/test_core.py::TestKarrLabBuildUtils::test_get_version
project/tests/test_core.py::TestKarrLabBuildUtils::test_install_package_config_files
project/tests/test_core.py::TestKarrLabBuildUtils::test_install_requirements
project/tests/test_core.py::TestKarrLabBuildUtils::test_install_requirements_no_file
project/tests/test_core.py::TestKarrLabBuildUtils::test_low_level_docker_commands
project/tests/test_core.py::TestKarrLabBuildUtils::test_make_and_archive_reports
project/tests/test_core.py::TestKarrLabBuildUtils::test_make_and_archive_reports_with_missing_req
project/tests/test_core.py::TestKarrLabBuildUtils::test_make_documentation
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project/tests/test_core.py::TestKarrLabBuildUtils::test_upload_coverage_report_to_code_climate
project/tests/test_core.py::TestKarrLabBuildUtils::test_upload_coverage_report_to_code_climate_no_coverage_files
project/tests/test_core.py::TestKarrLabBuildUtils::test_upload_coverage_report_to_coveralls
project/tests/test_core.py::TestKarrLabBuildUtils::test_upload_coverage_report_to_coveralls_no_coverage_files
project/tests/test_core.py::TestKarrLabBuildUtils::test_upload_documentation_to_docs_server
project/tests/test_core.py::TestKarrLabBuildUtils::test_upload_package_to_pypi
project/tests/test_core.py::TestKarrLabBuildUtils::test_visualize_package_dependencies
project/tests/test_core.py::TestCircleCi::test_run_tests_circleci
project/tests/test_core.py::TestCircleCi::test_run_tests_circleci_with_ssh_image
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.5.xml -----
no tests ran in 0.02 seconds
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| Standard error | |
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|
project.tests.test_core.TestKarrLabBuildUtils |
test__run_docker_command_ca... |
project/tests/test_core.py |
749 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:748: <py._xmlgen.raw object at 0x7f8b18034c88> |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__run_docker_command_ex... |
project/tests/test_core.py |
760 |
Skipped |
0.000 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:759: <py._xmlgen.raw object at 0x7f8b180e7908> |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
