|
project.tests.test_api.ApiTestCase |
test |
project/tests/test_api.py |
13 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_analyze_package |
project/tests/test_core.py |
2413 |
Pass |
37.937 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_coverage_report |
project/tests/test_core.py |
1745 |
Pass |
3.361 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report |
project/tests/test_core.py |
1659 |
Pass |
6.223 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report_err |
project/tests/test_core.py |
1679 |
Pass |
0.316 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report_no... |
project/tests/test_core.py |
1674 |
Pass |
0.248 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_are_package_dependenci... |
project/tests/test_core.py |
2035 |
Pass |
1.334 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_BuildHelperError |
project/tests/test_core.py |
2661 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_combine_coverage_reports |
project/tests/test_core.py |
1698 |
Pass |
0.650 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_combine_coverage_repor... |
project/tests/test_core.py |
1737 |
Pass |
0.246 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_compile_downstream_dep... |
project/tests/test_core.py |
1960 |
Pass |
1.050 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_code_climate_gi... |
project/tests/test_core.py |
494 |
Pass |
1.320 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_documentation_t... |
project/tests/test_core.py |
1825 |
Pass |
0.608 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_documentation_t... |
project/tests/test_core.py |
1862 |
Pass |
0.254 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_package |
project/tests/test_core.py |
124 |
Pass |
12.825 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | This program will guide you through creating a new package.
Creating private remote Git repository "KarrLab/test_a" on GitHub and cloning this repository to "/tmp/tmpngdtmb2m/test_a"
Visit "https://codeclimate.com/dashboard" and click on the "KarrLab" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_a" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_a" repository and click its "OFF" button
Click the details button for the "KarrLab/test_a" repository
Click the "Settings" menu item
Click the "README BADGE" EMBED" button
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_a" repository and click its "Set Up Project" button
Click the "Start building" button. Note, the first CircleCI build will fail because no code has yet been pushed.
Click the "Project settings" icon
Click the "API permissions" menu item
Click the "Create Token" button
Select "All", enter a label, and click the "Add Token" button
Visit "https://pypi.org/manage/project/test_a/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-a"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
This program will guide you through creating a new package.
Creating public remote Git repository "KarrLab/test_b" on GitHub and cloning this repository to "/tmp/tmpngdtmb2m/test_b"
Visit "https://codeclimate.com/dashboard" and click on the "Open source" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_b" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_b" repository and click its "OFF" button
Click the details button for the "KarrLab/test_b" repository
Click the "Settings" menu item
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_b" repository and click its "Set Up Project" button
Click the "Start building" button. Note, the first CircleCI build will fail because no code has yet been pushed.
Click the "Project settings" icon
Click the "Checkout SSH keys" button
Click the "Authorize with GitHub" button
Click the "Create and add ... user key" button
Visit "https://readthedocs.org/dashboard/import/?"
Click the "refresh" icon
Find the "test_b" repository and click its "+" button
Click the "Next" button
Click the "Admin" menu item
Click the "Advanced settings" menu item
Set the "Requirements file" to "docs/requirements.rtd.txt"
Set the "Python configuration file" to "docs/conf.py"
Set the "Python interpreter" to "CPython 3.x"
Click the "Maintainers" menu item
Add "karr-lab-daemon" to the maintainers
Click the "Notifications" menu item
Add your email address and click submit
Add "jonrkarr@gmail.com" and click submit
Visit "https://pypi.org/manage/project/test_b/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-b"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
This program will guide you through creating a new package.
Creating public remote Git repository "KarrLab/test_c" on GitHub and cloning this repository to "/tmp/tmpngdtmb2m/test_c"
Visit "https://codeclimate.com/dashboard" and click on the "Open source" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_c" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_c" repository and click its "OFF" button
Click the details button for the "KarrLab/test_c" repository
Click the "Settings" menu item
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_c" repository and click its "Set Up Project" button
Click the "Start building" button. Note, the first CircleCI build will fail because no code has yet been pushed.
Visit "https://readthedocs.org/dashboard/import/?"
Click the "refresh" icon
Find the "test_c" repository and click its "+" button
Click the "Next" button
Click the "Admin" menu item
Click the "Advanced settings" menu item
Set the "Requirements file" to "docs/requirements.rtd.txt"
Set the "Python configuration file" to "docs/conf.py"
Set the "Python interpreter" to "CPython 3.x"
Click the "Maintainers" menu item
Add "karr-lab-daemon" to the maintainers
Click the "Notifications" menu item
Add your email address and click submit
Add "jonrkarr@gmail.com" and click submit
Visit "https://pypi.org/manage/project/test_c/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-c"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_repository |
project/tests/test_core.py |
269 |
Pass |
12.002 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_delete_circleci_enviro... |
project/tests/test_core.py |
461 |
Pass |
1.308 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_docker_help |
project/tests/test_core.py |
717 |
Pass |
0.064 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | usage: karr_lab_build_utils docker [-h]
{remove-container,run-tests-in-container,install-package-to-container,create-container}
...
Docker utilities
optional arguments:
-h, --help show this help message and exit
sub-commands:
{remove-container,run-tests-in-container,install-package-to-container,create-container}
remove-container Remove a Docker container
run-tests-in-container
Run tests in a Docker container
install-package-to-container
Copy and install a package to a Docker container
create-container Create a Docker container for running tests
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_download_install_packa... |
project/tests/test_core.py |
2605 |
Pass |
0.567 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_download_package_confi... |
project/tests/test_core.py |
2554 |
Pass |
6.071 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_do_post_test_tasks |
project/tests/test_core.py |
794 |
Pass |
1.622 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core |
test_dummy_pytest |
project/tests/test_core.py |
2700 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_dummy_test |
project/tests/test_core.py |
2686 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_find_missing_requirements |
project/tests/test_core.py |
2450 |
Pass |
18.116 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_find_unused_requirements |
project/tests/test_core.py |
2482 |
Pass |
15.771 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_follow_circleci_build |
project/tests/test_core.py |
380 |
Pass |
2.248 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_follow_circleci_build_... |
project/tests/test_core.py |
391 |
Pass |
0.274 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_circleci_environme... |
project/tests/test_core.py |
407 |
Pass |
0.725 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_config |
project/tests/test_core.py |
2689 |
Pass |
0.004 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_test_results |
project/tests/test_core.py |
883 |
Pass |
0.252 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_version |
project/tests/test_core.py |
2610 |
Pass |
0.532 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_package_config... |
project/tests/test_core.py |
2583 |
Pass |
0.261 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_requirements |
project/tests/test_core.py |
511 |
Pass |
9.863 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Requirement already satisfied: setuptools in /usr/local/lib/python3.6/site-packages (40.8.0)
Requirement already satisfied: pip in /usr/local/lib/python3.6/site-packages (19.0.3)
Requirement already satisfied: abduct in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 2)) (2.0.1)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 3)) (3.0.2)
Requirement already satisfied: click in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 4)) (7.0)
Requirement already satisfied: configobj in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 6)) (4.5.3)
Requirement already satisfied: coveralls in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 7)) (1.6.0)
Requirement already satisfied: ftputil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 8)) (3.4)
Requirement already satisfied: gitpython in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 9)) (2.1.11)
Requirement already satisfied: graphviz in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 10)) (0.10.1)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 11)) (2.10)
Requirement already satisfied: mock in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 12)) (2.0.0)
Requirement already satisfied: natsort in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 13)) (6.0.0)
Requirement already satisfied: networkx in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 14)) (2.2)
Requirement already satisfied: nose in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 15)) (1.3.7)
Requirement already satisfied: pip>=19.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 16)) (19.0.3)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 17)) (2.0.3)
Requirement already satisfied: pkg_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 18)) (0.0.4)
Requirement already satisfied: pygithub in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 19)) (1.43.5)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 20)) (2.3.1)
Requirement already satisfied: pypandoc in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 21)) (1.4)
Requirement already satisfied: pytest in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 22)) (4.3.1)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 23)) (2.8.0)
Requirement already satisfied: pyyaml>=5.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 24)) (5.1.2)
Requirement already satisfied: quilt in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 25)) (2.9.15)
Requirement already satisfied: requests in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 26)) (2.21.0)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 27)) (40.8.0)
Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 28)) (1.12.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 29)) (1.8.5)
Requirement already satisfied: sphinx_fontawesome in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 30)) (0.0.6)
Requirement already satisfied: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 31)) (0.4.3)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 32)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 33)) (0.4.2)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 34)) (0.1.1)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 35)) (4.2.0)
Requirement already satisfied: sphinxprettysearchresults in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 36)) (0.3.5)
Requirement already satisfied: twine in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 37)) (1.13.0)
Requirement already satisfied: wc_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 38)) (0.0.9)
Requirement already satisfied: wheel in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 39)) (0.33.1)
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Requirement already satisfied: capturer in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpgbqzr4y4.txt (line 41)) (2.4)
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Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.6/site-packages (from coveralls->-r /tmp/tmpgbqzr4y4.txt (line 7)) (0.6.2)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->-r /tmp/tmpgbqzr4y4.txt (line 9)) (2.0.5)
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Requirement already satisfied: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->-r /tmp/tmpgbqzr4y4.txt (line 12)) (5.1.3)
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.6/site-packages (from networkx->-r /tmp/tmpgbqzr4y4.txt (line 14)) (4.3.2)
Requirement already satisfied: packaging in /usr/local/lib/python3.6/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmpgbqzr4y4.txt (line 17)) (19.0)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 18)) (0.2.0)
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Requirement already satisfied: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmpgbqzr4y4.txt (line 19)) (1.2.5)
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Requirement already satisfied: tqdm>=4.11.2 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmpgbqzr4y4.txt (line 25)) (4.31.1)
Requirement already satisfied: numpy>=1.14.0 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmpgbqzr4y4.txt (line 25)) (1.16.2)
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Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpgbqzr4y4.txt (line 26)) (2019.3.9)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpgbqzr4y4.txt (line 26)) (3.0.4)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpgbqzr4y4.txt (line 26)) (1.24.1)
Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmpgbqzr4y4.txt (line 26)) (2.8)
Requirement already satisfied: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpgbqzr4y4.txt (line 29)) (0.14)
Requirement already satisfied: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpgbqzr4y4.txt (line 29)) (2.3.1)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpgbqzr4y4.txt (line 29)) (0.7.12)
Requirement already satisfied: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpgbqzr4y4.txt (line 29)) (1.1.0)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpgbqzr4y4.txt (line 29)) (2.6.0)
Requirement already satisfied: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpgbqzr4y4.txt (line 29)) (1.1.0)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmpgbqzr4y4.txt (line 29)) (1.2.1)
Requirement already satisfied: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpgbqzr4y4.txt (line 33)) (0.22.2)
Requirement already satisfied: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpgbqzr4y4.txt (line 33)) (0.2.1)
Requirement already satisfied: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpgbqzr4y4.txt (line 33)) (0.1.3)
Requirement already satisfied: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->-r /tmp/tmpgbqzr4y4.txt (line 35)) (2.0.0)
Requirement already satisfied: readme-renderer>=21.0 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpgbqzr4y4.txt (line 37)) (24.0)
Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpgbqzr4y4.txt (line 37)) (1.5.0.1)
Requirement already satisfied: requests-toolbelt!=0.9.0,>=0.8.0 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmpgbqzr4y4.txt (line 37)) (0.9.1)
Requirement already satisfied: pyexcel-io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.5.14)
Requirement already satisfied: pint>=0.9 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.9)
Requirement already satisfied: xlsxwriter in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.1.5)
Requirement already satisfied: mendeleev in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.4.4)
Requirement already satisfied: objsize in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.3.2)
Requirement already satisfied: openpyxl>=2.6.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (2.6.1)
Requirement already satisfied: diskcache in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (3.1.1)
Requirement already satisfied: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.5.13)
Requirement already satisfied: qualname in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.1.0)
Requirement already satisfied: humanfriendly in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (4.18)
Requirement already satisfied: pronto in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.12.1)
Requirement already satisfied: openbabel; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (2.4.1)
Requirement already satisfied: pyjnius; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.2.0)
Requirement already satisfied: scipy; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.2.1)
Requirement already satisfied: logging2; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.1.2)
Requirement already satisfied: matplotlib; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (3.0.3)
Requirement already satisfied: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->-r /tmp/tmpgbqzr4y4.txt (line 9)) (2.0.5)
Requirement already satisfied: pyparsing>=2.0.2 in /usr/local/lib/python3.6/site-packages (from packaging->pip_check_reqs>=2.0.3->-r /tmp/tmpgbqzr4y4.txt (line 17)) (2.3.1)
Requirement already satisfied: wrapt<2,>=1 in /usr/local/lib/python3.6/site-packages (from Deprecated->pygithub->-r /tmp/tmpgbqzr4y4.txt (line 19)) (1.11.1)
Requirement already satisfied: typed-ast>=1.3.0; implementation_name == "cpython" in /usr/local/lib/python3.6/site-packages (from astroid<3,>=2.2.0->pylint>=2.1.1->-r /tmp/tmpgbqzr4y4.txt (line 20)) (1.3.1)
Requirement already satisfied: lazy-object-proxy in /usr/local/lib/python3.6/site-packages (from astroid<3,>=2.2.0->pylint>=2.1.1->-r /tmp/tmpgbqzr4y4.txt (line 20)) (1.3.1)
Requirement already satisfied: pytz>=2011k in /usr/local/lib/python3.6/site-packages (from pandas>=0.21.0->quilt->-r /tmp/tmpgbqzr4y4.txt (line 25)) (2018.9)
Requirement already satisfied: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->-r /tmp/tmpgbqzr4y4.txt (line 33)) (1.0.6)
Requirement already satisfied: bleach>=2.1.0 in /usr/local/lib/python3.6/site-packages (from readme-renderer>=21.0->twine->-r /tmp/tmpgbqzr4y4.txt (line 37)) (3.1.0)
Requirement already satisfied: lml>=0.0.4 in /usr/local/lib/python3.6/site-packages (from pyexcel-io>=0.5.9.1->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.0.9)
Requirement already satisfied: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.4.1)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.3.1)
Requirement already satisfied: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.8.post1)
Requirement already satisfied: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.4)
Requirement already satisfied: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.0.1)
Requirement already satisfied: texttable>=0.8.2 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.6.1)
Requirement already satisfied: cython in /usr/local/lib/python3.6/site-packages (from pyjnius; extra == "all"->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.29.6)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (1.0.1)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpgbqzr4y4.txt (line 38)) (0.10.0)
Requirement already satisfied: webencodings in /usr/local/lib/python3.6/site-packages (from bleach>=2.1.0->readme-renderer>=21.0->twine->-r /tmp/tmpgbqzr4y4.txt (line 37)) (0.5.1)
Requirement already satisfied: setuptools in /usr/local/lib/python3.6/site-packages (40.8.0)
Requirement already satisfied: pip in /usr/local/lib/python3.6/site-packages (19.0.3)
Requirement already satisfied: abduct in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 2)) (2.0.1)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 3)) (3.0.2)
Requirement already satisfied: click in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 4)) (7.0)
Requirement already satisfied: configobj in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 6)) (4.5.3)
Requirement already satisfied: coveralls in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 7)) (1.6.0)
Requirement already satisfied: ftputil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 8)) (3.4)
Requirement already satisfied: gitpython in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 9)) (2.1.11)
Requirement already satisfied: graphviz in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 10)) (0.10.1)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 11)) (2.10)
Requirement already satisfied: mock in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 12)) (2.0.0)
Requirement already satisfied: natsort in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 13)) (6.0.0)
Requirement already satisfied: networkx in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 14)) (2.2)
Requirement already satisfied: nose in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 15)) (1.3.7)
Requirement already satisfied: pip>=19.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 16)) (19.0.3)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 17)) (2.0.3)
Requirement already satisfied: pkg_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 18)) (0.0.4)
Requirement already satisfied: pygithub in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 19)) (1.43.5)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 20)) (2.3.1)
Requirement already satisfied: pypandoc in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 21)) (1.4)
Requirement already satisfied: pytest in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 22)) (4.3.1)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 23)) (2.8.0)
Requirement already satisfied: pyyaml>=5.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 24)) (5.1.2)
Requirement already satisfied: quilt in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 25)) (2.9.15)
Requirement already satisfied: requests in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 26)) (2.21.0)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 27)) (40.8.0)
Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 28)) (1.12.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 29)) (1.8.5)
Requirement already satisfied: sphinx_fontawesome in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 30)) (0.0.6)
Requirement already satisfied: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 31)) (0.4.3)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 32)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 33)) (0.4.2)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 34)) (0.1.1)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 35)) (4.2.0)
Requirement already satisfied: sphinxprettysearchresults in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 36)) (0.3.5)
Requirement already satisfied: twine in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 37)) (1.13.0)
Requirement already satisfied: wc_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 38)) (0.0.9)
Requirement already satisfied: wheel in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 39)) (0.33.1)
Requirement already satisfied: whichcraft in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 40)) (0.5.2)
Requirement already satisfied: capturer in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmptsbmxlqz.txt (line 41)) (2.4)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->-r /tmp/tmptsbmxlqz.txt (line 1)) (0.5.5)
Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.6/site-packages (from coveralls->-r /tmp/tmptsbmxlqz.txt (line 7)) (0.6.2)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->-r /tmp/tmptsbmxlqz.txt (line 9)) (2.0.5)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from jinja2->-r /tmp/tmptsbmxlqz.txt (line 11)) (1.1.1)
Requirement already satisfied: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->-r /tmp/tmptsbmxlqz.txt (line 12)) (5.1.3)
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.6/site-packages (from networkx->-r /tmp/tmptsbmxlqz.txt (line 14)) (4.3.2)
Requirement already satisfied: packaging in /usr/local/lib/python3.6/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmptsbmxlqz.txt (line 17)) (19.0)
Requirement already satisfied: configparser in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 18)) (3.7.3)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 18)) (0.2.0)
Requirement already satisfied: glob2 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 18)) (0.6)
Requirement already satisfied: pyjwt in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmptsbmxlqz.txt (line 19)) (1.7.1)
Requirement already satisfied: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmptsbmxlqz.txt (line 19)) (1.2.5)
Requirement already satisfied: isort<5,>=4.2.5 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmptsbmxlqz.txt (line 20)) (4.3.15)
Requirement already satisfied: mccabe<0.7,>=0.6 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmptsbmxlqz.txt (line 20)) (0.6.1)
Requirement already satisfied: astroid<3,>=2.2.0 in /usr/local/lib/python3.6/site-packages (from pylint>=2.1.1->-r /tmp/tmptsbmxlqz.txt (line 20)) (2.2.5)
Requirement already satisfied: py>=1.5.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptsbmxlqz.txt (line 22)) (1.8.0)
Requirement already satisfied: pluggy>=0.7 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptsbmxlqz.txt (line 22)) (0.9.0)
Requirement already satisfied: atomicwrites>=1.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptsbmxlqz.txt (line 22)) (1.3.0)
Requirement already satisfied: more-itertools>=4.0.0; python_version > "2.7" in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptsbmxlqz.txt (line 22)) (6.0.0)
Requirement already satisfied: attrs>=17.4.0 in /usr/local/lib/python3.6/site-packages (from pytest->-r /tmp/tmptsbmxlqz.txt (line 22)) (19.1.0)
Requirement already satisfied: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (1.2.0)
Requirement already satisfied: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (0.12.1)
Requirement already satisfied: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (0.17.1)
Requirement already satisfied: numpy>=1.14.0 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (1.16.2)
Requirement already satisfied: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (1.4.3)
Requirement already satisfied: tqdm>=4.11.2 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (4.31.1)
Requirement already satisfied: pandas>=0.21.0 in /usr/local/lib/python3.6/site-packages (from quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (0.24.1)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptsbmxlqz.txt (line 26)) (2019.3.9)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptsbmxlqz.txt (line 26)) (1.24.1)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptsbmxlqz.txt (line 26)) (3.0.4)
Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->-r /tmp/tmptsbmxlqz.txt (line 26)) (2.8)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptsbmxlqz.txt (line 29)) (0.7.12)
Requirement already satisfied: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptsbmxlqz.txt (line 29)) (2.3.1)
Requirement already satisfied: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptsbmxlqz.txt (line 29)) (1.1.0)
Requirement already satisfied: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptsbmxlqz.txt (line 29)) (1.1.0)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptsbmxlqz.txt (line 29)) (2.6.0)
Requirement already satisfied: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptsbmxlqz.txt (line 29)) (0.14)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->-r /tmp/tmptsbmxlqz.txt (line 29)) (1.2.1)
Requirement already satisfied: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmptsbmxlqz.txt (line 33)) (0.22.2)
Requirement already satisfied: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmptsbmxlqz.txt (line 33)) (0.1.3)
Requirement already satisfied: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmptsbmxlqz.txt (line 33)) (0.2.1)
Requirement already satisfied: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->-r /tmp/tmptsbmxlqz.txt (line 35)) (2.0.0)
Requirement already satisfied: requests-toolbelt!=0.9.0,>=0.8.0 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmptsbmxlqz.txt (line 37)) (0.9.1)
Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmptsbmxlqz.txt (line 37)) (1.5.0.1)
Requirement already satisfied: readme-renderer>=21.0 in /usr/local/lib/python3.6/site-packages (from twine->-r /tmp/tmptsbmxlqz.txt (line 37)) (24.0)
Requirement already satisfied: pyexcel-io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.5.14)
Requirement already satisfied: qualname in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.1.0)
Requirement already satisfied: xlsxwriter in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.1.5)
Requirement already satisfied: mendeleev in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.4.4)
Requirement already satisfied: pronto in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.12.1)
Requirement already satisfied: humanfriendly in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (4.18)
Requirement already satisfied: openpyxl>=2.6.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (2.6.1)
Requirement already satisfied: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.5.13)
Requirement already satisfied: objsize in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.3.2)
Requirement already satisfied: diskcache in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (3.1.1)
Requirement already satisfied: pint>=0.9 in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.9)
Requirement already satisfied: logging2; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.1.2)
Requirement already satisfied: pyjnius; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.2.0)
Requirement already satisfied: openbabel; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (2.4.1)
Requirement already satisfied: scipy; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.2.1)
Requirement already satisfied: matplotlib; extra == "all" in /usr/local/lib/python3.6/site-packages (from wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (3.0.3)
Requirement already satisfied: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->-r /tmp/tmptsbmxlqz.txt (line 9)) (2.0.5)
Requirement already satisfied: pyparsing>=2.0.2 in /usr/local/lib/python3.6/site-packages (from packaging->pip_check_reqs>=2.0.3->-r /tmp/tmptsbmxlqz.txt (line 17)) (2.3.1)
Requirement already satisfied: wrapt<2,>=1 in /usr/local/lib/python3.6/site-packages (from Deprecated->pygithub->-r /tmp/tmptsbmxlqz.txt (line 19)) (1.11.1)
Requirement already satisfied: typed-ast>=1.3.0; implementation_name == "cpython" in /usr/local/lib/python3.6/site-packages (from astroid<3,>=2.2.0->pylint>=2.1.1->-r /tmp/tmptsbmxlqz.txt (line 20)) (1.3.1)
Requirement already satisfied: lazy-object-proxy in /usr/local/lib/python3.6/site-packages (from astroid<3,>=2.2.0->pylint>=2.1.1->-r /tmp/tmptsbmxlqz.txt (line 20)) (1.3.1)
Requirement already satisfied: pytz>=2011k in /usr/local/lib/python3.6/site-packages (from pandas>=0.21.0->quilt->-r /tmp/tmptsbmxlqz.txt (line 25)) (2018.9)
Requirement already satisfied: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->-r /tmp/tmptsbmxlqz.txt (line 33)) (1.0.6)
Requirement already satisfied: bleach>=2.1.0 in /usr/local/lib/python3.6/site-packages (from readme-renderer>=21.0->twine->-r /tmp/tmptsbmxlqz.txt (line 37)) (3.1.0)
Requirement already satisfied: lml>=0.0.4 in /usr/local/lib/python3.6/site-packages (from pyexcel-io>=0.5.9.1->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.0.9)
Requirement already satisfied: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.8.post1)
Requirement already satisfied: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.4.1)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.3.1)
Requirement already satisfied: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.4)
Requirement already satisfied: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.0.1)
Requirement already satisfied: texttable>=0.8.2 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.6.1)
Requirement already satisfied: cython in /usr/local/lib/python3.6/site-packages (from pyjnius; extra == "all"->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.29.6)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (0.10.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmptsbmxlqz.txt (line 38)) (1.0.1)
Requirement already satisfied: webencodings in /usr/local/lib/python3.6/site-packages (from bleach>=2.1.0->readme-renderer>=21.0->twine->-r /tmp/tmptsbmxlqz.txt (line 37)) (0.5.1)
|
|---|
| Standard error | You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_requirements_n... |
project/tests/test_core.py |
522 |
Pass |
4.890 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Requirement already satisfied: setuptools in /usr/local/lib/python3.6/site-packages (40.8.0)
Requirement already satisfied: pip in /usr/local/lib/python3.6/site-packages (19.0.3)
Requirement already satisfied: abduct in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 2)) (2.0.1)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 3)) (3.0.2)
Requirement already satisfied: click in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 4)) (7.0)
Requirement already satisfied: configobj in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 6)) (4.5.3)
Requirement already satisfied: coveralls in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 7)) (1.6.0)
Requirement already satisfied: ftputil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 8)) (3.4)
Requirement already satisfied: gitpython in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 9)) (2.1.11)
Requirement already satisfied: graphviz in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 10)) (0.10.1)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 11)) (2.10)
Requirement already satisfied: mock in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 12)) (2.0.0)
Requirement already satisfied: natsort in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 13)) (6.0.0)
Requirement already satisfied: networkx in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 14)) (2.2)
Requirement already satisfied: nose in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 15)) (1.3.7)
Requirement already satisfied: pip>=19.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 16)) (19.0.3)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 17)) (2.0.3)
Requirement already satisfied: pkg_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 18)) (0.0.4)
Requirement already satisfied: pygithub in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 19)) (1.43.5)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 20)) (2.3.1)
Requirement already satisfied: pypandoc in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 21)) (1.4)
Requirement already satisfied: pytest in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 22)) (4.3.1)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 23)) (2.8.0)
Requirement already satisfied: pyyaml>=5.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 24)) (5.1.2)
Requirement already satisfied: quilt in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 25)) (2.9.15)
Requirement already satisfied: requests in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 26)) (2.21.0)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 27)) (40.8.0)
Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 28)) (1.12.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 29)) (1.8.5)
Requirement already satisfied: sphinx_fontawesome in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 30)) (0.0.6)
Requirement already satisfied: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 31)) (0.4.3)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 32)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 33)) (0.4.2)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 34)) (0.1.1)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 35)) (4.2.0)
Requirement already satisfied: sphinxprettysearchresults in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 36)) (0.3.5)
Requirement already satisfied: twine in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 37)) (1.13.0)
Requirement already satisfied: wc_utils[all] in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 38)) (0.0.9)
Requirement already satisfied: wheel in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 39)) (0.33.1)
Requirement already satisfied: whichcraft in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 40)) (0.5.2)
Requirement already satisfied: capturer in /usr/local/lib/python3.6/site-packages (from -r /tmp/tmpm6evubvw.txt (line 41)) (2.4)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->-r /tmp/tmpm6evubvw.txt (line 1)) (0.5.5)
Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.6/site-packages (from coveralls->-r /tmp/tmpm6evubvw.txt (line 7)) (0.6.2)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->-r /tmp/tmpm6evubvw.txt (line 9)) (2.0.5)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from jinja2->-r /tmp/tmpm6evubvw.txt (line 11)) (1.1.1)
Requirement already satisfied: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->-r /tmp/tmpm6evubvw.txt (line 12)) (5.1.3)
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.6/site-packages (from networkx->-r /tmp/tmpm6evubvw.txt (line 14)) (4.3.2)
Requirement already satisfied: packaging in /usr/local/lib/python3.6/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmpm6evubvw.txt (line 17)) (19.0)
Requirement already satisfied: glob2 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpm6evubvw.txt (line 18)) (0.6)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpm6evubvw.txt (line 18)) (0.2.0)
Requirement already satisfied: configparser in /usr/local/lib/python3.6/site-packages (from pkg_utils[all]->-r /tmp/tmpm6evubvw.txt (line 18)) (3.7.3)
Requirement already satisfied: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmpm6evubvw.txt (line 19)) (1.2.5)
Requirement already satisfied: pyjwt in /usr/local/lib/python3.6/site-packages (from pygithub->-r /tmp/tmpm6evubvw.txt (line 19)) (1.7.1)
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|
|---|
| Standard error | You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_log_environment |
project/tests/test_core.py |
1953 |
Pass |
0.453 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_low_level_docker_commands |
project/tests/test_core.py |
721 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:720: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_and_archive_reports |
project/tests/test_core.py |
1597 |
Pass |
82.678 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
************* Module karr_lab_build_utils.core
karr_lab_build_utils/core.py:977: warning (W0613, unused-argument, BuildHelper._run_tests_local) Unused argument 'dirname'
karr_lab_build_utils/core.py:1278: warning (W0612, unused-variable, BuildHelper.install_package_to_docker_container) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1465: warning (W0612, unused-variable, BuildHelper._run_tests_circleci) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1664: warning (W0612, unused-variable, BuildHelper.get_test_results_status) Unused variable 'upstream_build_num'
karr_lab_build_utils/core.py:33: warning (W0611, unused-import, ) Unused import json
karr_lab_build_utils/core.py:57: warning (W0611, unused-import, ) Unused import six
************* Module karr_lab_build_utils.__main__
karr_lab_build_utils/__main__.py:191: warning (W0612, unused-variable, DownloadInstallPackageConfigFilesController._default) Unused variable 'args'
karr_lab_build_utils/__main__.py:10: warning (W0611, unused-import, ) Unused BuildHelperError imported from karr_lab_build_utils.core
karr_lab_build_utils/__main__.py:13: warning (W0611, unused-import, ) Unused import sys
************* Module karr_lab_build_utils.config.core
karr_lab_build_utils/config/core.py:9: warning (W0611, unused-import, ) Unused import configobj
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.5
Initializing Spelling Checker
making output directory...
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 8 source files that are out of date
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
generating indices... genindex py-modindex
writing additional pages... search
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 7 warnings.
The HTML pages are in docs/_build/html.
Running Sphinx v1.8.5
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
************* Module karr_lab_build_utils.core
karr_lab_build_utils/core.py:977: warning (W0613, unused-argument, BuildHelper._run_tests_local) Unused argument 'dirname'
karr_lab_build_utils/core.py:1278: warning (W0612, unused-variable, BuildHelper.install_package_to_docker_container) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1465: warning (W0612, unused-variable, BuildHelper._run_tests_circleci) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1664: warning (W0612, unused-variable, BuildHelper.get_test_results_status) Unused variable 'upstream_build_num'
karr_lab_build_utils/core.py:33: warning (W0611, unused-import, ) Unused import json
karr_lab_build_utils/core.py:57: warning (W0611, unused-import, ) Unused import six
************* Module karr_lab_build_utils.__main__
karr_lab_build_utils/__main__.py:191: warning (W0612, unused-variable, DownloadInstallPackageConfigFilesController._default) Unused variable 'args'
karr_lab_build_utils/__main__.py:10: warning (W0611, unused-import, ) Unused BuildHelperError imported from karr_lab_build_utils.core
karr_lab_build_utils/__main__.py:13: warning (W0611, unused-import, ) Unused import sys
************* Module karr_lab_build_utils.config.core
karr_lab_build_utils/config/core.py:9: warning (W0611, unused-import, ) Unused import configobj
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.5
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
Running Sphinx v1.8.5
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
|
|---|
| Standard error | /usr/local/lib/python3.6/site-packages/sphinxcontrib/spelling/__init__.py:11: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead.
app.info('Initializing Spelling Checker')
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
/usr/local/lib/python3.6/site-packages/sphinxcontrib/spelling/__init__.py:11: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead.
app.info('Initializing Spelling Checker')
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_and_archive_repor... |
project/tests/test_core.py |
1626 |
Pass |
34.660 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
************* Module karr_lab_build_utils.core
karr_lab_build_utils/core.py:977: warning (W0613, unused-argument, BuildHelper._run_tests_local) Unused argument 'dirname'
karr_lab_build_utils/core.py:1278: warning (W0612, unused-variable, BuildHelper.install_package_to_docker_container) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1465: warning (W0612, unused-variable, BuildHelper._run_tests_circleci) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1664: warning (W0612, unused-variable, BuildHelper.get_test_results_status) Unused variable 'upstream_build_num'
karr_lab_build_utils/core.py:33: warning (W0611, unused-import, ) Unused import json
karr_lab_build_utils/core.py:57: warning (W0611, unused-import, ) Unused import six
************* Module karr_lab_build_utils.__main__
karr_lab_build_utils/__main__.py:191: warning (W0612, unused-variable, DownloadInstallPackageConfigFilesController._default) Unused variable 'args'
karr_lab_build_utils/__main__.py:10: warning (W0611, unused-import, ) Unused BuildHelperError imported from karr_lab_build_utils.core
karr_lab_build_utils/__main__.py:13: warning (W0611, unused-import, ) Unused import sys
************* Module karr_lab_build_utils.config.core
karr_lab_build_utils/config/core.py:9: warning (W0611, unused-import, ) Unused import configobj
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.5
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
Running Sphinx v1.8.5
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
|
|---|
| Standard error | /usr/local/lib/python3.6/site-packages/sphinxcontrib/spelling/__init__.py:11: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead.
app.info('Initializing Spelling Checker')
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_documentation |
project/tests/test_core.py |
1879 |
Pass |
39.618 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.5
Initializing Spelling Checker
making output directory...
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 8 source files that are out of date
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
generating indices... genindex py-modindex
writing additional pages... search
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 7 warnings.
The HTML pages are in docs/_build/html.
Running Sphinx v1.8.5
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
Running Sphinx v1.8.5
Initializing Spelling Checker
making output directory...
Ignoring wiki words
Ignoring acronyms
Ignoring Python builtins
Ignoring importable module names
Looking for custom word list in /root/project/docs/spelling_wordlist.txt
building [mo]: targets for 0 po files that are out of date
building [spelling]: all documents
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
index.rst:4:Karr:
index.rst:16:Pylint:
writing output... [ 37%] installation
installation.rst:5:Pre:
installation.rst:46:Karr:
writing output... [ 50%] source/karr_lab_build_utils
source/karr_lab_build_utils.rst:5:Subpackages:
source/karr_lab_build_utils.rst:12:Submodules:
source/karr_lab_build_utils.rst:15:karr:
source/karr_lab_build_utils.rst:15:utils:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:3:Karr:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:1:Pylint:
source/karr_lab_build_utils.rst:1:acyclic:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:1:webhook:
source/karr_lab_build_utils.rst:5:karrlab:
source/karr_lab_build_utils.rst:23:karr:
source/karr_lab_build_utils.rst:23:utils:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:3:Karr:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:8:pytest:
source/karr_lab_build_utils.rst:32:sha:
source/karr_lab_build_utils.rst:74:apidoc:
source/karr_lab_build_utils.rst:146:hostname:
source/karr_lab_build_utils.rst:248:pytest:
source/karr_lab_build_utils.rst:284:apidoc:
source/karr_lab_build_utils.rst:1:Pylint:
source/karr_lab_build_utils.rst:6:Reimported:
source/karr_lab_build_utils.rst:7:init:
source/karr_lab_build_utils.rst:7:py:
source/karr_lab_build_utils.rst:Pylint:
source/karr_lab_build_utils.rst:Pylist:
source/karr_lab_build_utils.rst:rcfile:
source/karr_lab_build_utils.rst:Pylint:
source/karr_lab_build_utils.rst:1:acyclic:
source/karr_lab_build_utils.rst:acyclic:
source/karr_lab_build_utils.rst:1:webhook:
source/karr_lab_build_utils.rst:10:webhook:
source/karr_lab_build_utils.rst:9:karrlab:
source/karr_lab_build_utils.rst:14:karrlab:
source/karr_lab_build_utils.rst:str:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:16:untriggered:
source/karr_lab_build_utils.rst:occurences:
source/karr_lab_build_utils.rst:Karr:
source/karr_lab_build_utils.rst:1:configs:
source/karr_lab_build_utils.rst:1:configs:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:6:coveragerc:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:circleci:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:1:htaccess:
source/karr_lab_build_utils.rst:str:
source/karr_lab_build_utils.rst:Karr:
source/karr_lab_build_utils.rst:9:untriggered:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:Karr:
writing output... [ 62%] source/karr_lab_build_utils.config
source/karr_lab_build_utils.config.rst:2:karr:
source/karr_lab_build_utils.config.rst:2:utils:
source/karr_lab_build_utils.config.rst:2:config:
source/karr_lab_build_utils.config.rst:5:Submodules:
source/karr_lab_build_utils.config.rst:8:karr:
source/karr_lab_build_utils.config.rst:8:utils:
source/karr_lab_build_utils.config.rst:8:config:
source/karr_lab_build_utils.config.rst:3:Karr:
source/karr_lab_build_utils.config.rst:5:Karr:
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
tutorial_admins.rst:40:Pylint:
tutorial_admins.rst:43:Pylint:
tutorial_admins.rst:143:pypirc:
writing output... [100%] tutorial_developers
tutorial_developers.rst:110:subdirectory:
tutorial_developers.rst:110:subdirectory:
Spelling checker messages written to /root/project/docs/_build/spelling/output.txt
build succeeded, 8 warnings.
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v1.8.5
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
Running Sphinx v1.8.5
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
|
|---|
| Standard error | /usr/local/lib/python3.6/site-packages/sphinxcontrib/spelling/__init__.py:11: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead.
app.info('Initializing Spelling Checker')
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
/usr/local/lib/python3.6/site-packages/sphinxcontrib/spelling/__init__.py:11: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead.
app.info('Initializing Spelling Checker')
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_documentation_error |
project/tests/test_core.py |
1897 |
Pass |
0.267 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
|
|---|
| Standard error |
Exception occurred:
File "/usr/local/lib/python3.6/site-packages/mock/mock.py", line 1118, in _mock_call
raise effect
Exception: Test exception
The full traceback has been saved in /tmp/sphinx-err-vnbtf8wq.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_no_build_num |
project/tests/test_core.py |
2654 |
Pass |
0.247 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_raw_cli |
project/tests/test_core.py |
2635 |
Pass |
0.176 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | usage: karr_lab_build_utils [-h] [-d] [-q] [-v]
{upload-package-to-pypi,find-unused-requirements,find-missing-requirements,analyze-package,visualize-package-dependencies,are-package-dependencies-acyclic,compile-downstream-dependencies,make-documentation,upload-coverage-report-to-code-climate,upload-coverage-report-to-coveralls,archive-coverage-report,combine-coverage-reports,make-and-archive-reports,do-post-test-tasks,create-code-climate-github-webhook,delete-circleci-environment-variable,set-circleci-environment-variable,get-circleci-environment-variables,follow-circleci-build,docker,run-tests,download-install-package-config-files,create-documentation-template,setup-repository,create-repository,create-package,archive-test-report,install-requirements,upgrade-karr-lab-packages}
...
Karr Lab build utilities
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{upload-package-to-pypi,find-unused-requirements,find-missing-requirements,analyze-package,visualize-package-dependencies,are-package-dependencies-acyclic,compile-downstream-dependencies,make-documentation,upload-coverage-report-to-code-climate,upload-coverage-report-to-coveralls,archive-coverage-report,combine-coverage-reports,make-and-archive-reports,do-post-test-tasks,create-code-climate-github-webhook,delete-circleci-environment-variable,set-circleci-environment-variable,get-circleci-environment-variables,follow-circleci-build,docker,run-tests,download-install-package-config-files,create-documentation-template,setup-repository,create-repository,create-package,archive-test-report,install-requirements,upgrade-karr-lab-packages}
upload-package-to-pypi
Upload package to PyPI
find-unused-requirements
Finding unused requirements for a package.
find-missing-requirements
Finding missing requirements for a package.
analyze-package Perform static analyses of a package using Pylint
visualize-package-dependencies
Visualize downstream package dependencies as a graph
are-package-dependencies-acyclic
Check if the package dependencies are acyclic so they
are supported by CircleCI
compile-downstream-dependencies
Compile the downstream dependencies of a package by
analyzing the requirements files of other packages
make-documentation Make HTML documentation. Optionally, spell check
documentation.
upload-coverage-report-to-code-climate
Upload coverage report to Code Climate
upload-coverage-report-to-coveralls
Upload coverage report to Coveralls
archive-coverage-report
Archive coverage report
combine-coverage-reports
Combine coverage reports (.coverage.*) into a single
file (.coverage)
make-and-archive-reports
Make and archive reports
do-post-test-tasks Do all post-test tasks for CircleCI
create-code-climate-github-webhook
Create Code Climate GitHub webhook for the current
repository
delete-circleci-environment-variable
Delete a CircleCI environment variable for a
repository
set-circleci-environment-variable
Set a CircleCI environment variable for a repository
get-circleci-environment-variables
Get the CircleCI environment variables for a
repository and their partial values
follow-circleci-build
Follow a CircleCI build for a repository
docker Docker utilities
run-tests Run unit tests located at `test_path`
download-install-package-config-files
Download and install configuration files from GitHub
configuration repository
create-documentation-template
Create a Sphinx documentation template for a package
setup-repository Setup a local Git repository with the default
directory structure
create-repository Create a GitHub repository and clone the repository
locally
create-package - Create local and remote Git repositories; - Setup
the directory structure of the repository; - Add the
repository to CircleCI, Coveralls, Code Climate, Read
the Docs, and code.karrlab.org; - Update the
downstream dependencies of the packages dependencies
archive-test-report
Archive test report
install-requirements
Install requirements
upgrade-karr-lab-packages
Upgrade the packages from the Karr Lab's GitHub
organization
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_method_and_capture... |
project/tests/test_core.py |
2664 |
Pass |
0.255 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests |
project/tests/test_core.py |
568 |
Pass |
1.607 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
---------- generated xml file: /tmp/tmp5t0b7l6l/latest.0-1.3.6.8.xml -----------
=========================== 1 passed in 0.02 seconds ===========================
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0 -- /usr/local/bin/python3.6
cachedir: .pytest_cache
rootdir: /root, inifile: pytest.ini
collecting ... collected 1 item
<Module project/tests/test_core.py>
Tests karr_lab_build_utils.
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2016-08-03
:Copyright: 2016-2018, Karr Lab
:License: MIT
<Function test_dummy_pytest>
---------- generated xml file: /tmp/tmp5t0b7l6l/latest.0-1.3.6.8.xml -----------
========================= no tests ran in 0.01 seconds =========================
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
---------- generated xml file: /tmp/tmp5t0b7l6l/latest.0-1.3.6.8.xml -----------
=========================== 1 passed in 0.01 seconds ===========================
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.03 seconds ===========================
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
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| Standard error | .
----------------------------------------------------------------------
Ran 1 test in 0.001s
OK
Coverage.py warning: No data was collected. (no-data-collected)
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|
project.tests.test_core.TestCircleCi |
test_run_tests_circleci |
project/tests/test_core.py |
2720 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
|---|
| Details | project/tests/test_core.py:2719: Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
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| Standard output | |
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| Standard error | |
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|
project.tests.test_core.TestCircleCi |
test_run_tests_circleci_wit... |
project/tests/test_core.py |
2732 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
|---|
| Details | project/tests/test_core.py:2731: Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
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| Standard output | |
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| Standard error | |
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project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_default_path |
project/tests/test_core.py |
634 |
Pass |
0.278 |
| Result type | |
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| Message | |
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| Standard output | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_docker |
project/tests/test_core.py |
743 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:742: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
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| Standard output | |
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| Standard error | |
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|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_error |
project/tests/test_core.py |
656 |
Pass |
0.250 |
| Result type | |
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| Message | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_multiple_wor... |
project/tests/test_core.py |
630 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Todo |
|---|
| Details | project/tests/test_core.py:629: Todo |
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| Standard output | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_unsupported_env |
project/tests/test_core.py |
789 |
Pass |
0.246 |
| Result type | |
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| Message | |
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| Standard output | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_with_test_pa... |
project/tests/test_core.py |
640 |
Pass |
0.327 |
| Result type | |
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| Message | |
|---|
| Details | |
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| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=========================== 1 passed in 0.02 seconds ===========================
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| Standard error | |
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project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_with_verbose |
project/tests/test_core.py |
647 |
Pass |
0.293 |
| Result type | |
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| Message | |
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| Details | |
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| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py .
=========================== 1 passed in 0.01 seconds ===========================
|
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| Standard error | .
----------------------------------------------------------------------
Ran 1 test in 0.001s
OK
|
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1576 |
Pass |
0.250 |
| Result type | |
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| Message | |
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| Standard error | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1249 |
Pass |
0.499 |
| Result type | |
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| Standard output | |
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| Standard error | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
994 |
Pass |
0.249 |
| Result type | |
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| Message | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1505 |
Pass |
0.555 |
| Result type | |
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| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
917 |
Pass |
0.511 |
| Result type | |
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| Message | |
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| Details | |
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|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1161 |
Pass |
0.520 |
| Result type | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1083 |
Pass |
0.271 |
| Result type | |
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| Standard error | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1401 |
Pass |
0.534 |
| Result type | |
|---|
| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1341 |
Pass |
0.502 |
| Result type | |
|---|
| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_setup_repository |
project/tests/test_core.py |
310 |
Pass |
0.675 |
| Result type | |
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| Standard output | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_set_circleci_environme... |
project/tests/test_core.py |
424 |
Pass |
1.737 |
| Result type | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2341 |
Pass |
0.750 |
| Result type | |
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| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2407 |
Pass |
0.257 |
| Result type | |
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| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2171 |
Pass |
0.506 |
| Result type | |
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| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
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|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2189 |
Pass |
0.494 |
| Result type | |
|---|
| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2282 |
Pass |
0.505 |
| Result type | |
|---|
| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2141 |
Pass |
0.495 |
| Result type | |
|---|
| Message | |
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| Details | |
|---|
| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2227 |
Pass |
0.503 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_unsupported_test_runner |
project/tests/test_core.py |
2647 |
Pass |
0.001 |
| Result type | |
|---|
| Message | |
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| Details | |
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| Standard output | |
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| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upgrade_karr_lab_packages |
project/tests/test_core.py |
533 |
Pass |
13.784 |
| Result type | |
|---|
| Message | |
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| Details | |
|---|
| Standard output | Collecting pkg-utils[all] from git+https://github.com/KarrLab/pkg_utils.git#egg=pkg-utils[all]
Cloning https://github.com/KarrLab/pkg_utils.git to /tmp/pip-install-u9pxa8te/pkg-utils
Collecting wc-utils[all] from git+https://github.com/KarrLab/wc_utils.git#egg=wc-utils[all]
Cloning https://github.com/KarrLab/wc_utils.git to /tmp/pip-install-u9pxa8te/wc-utils
Requirement already satisfied, skipping upgrade: configparser in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (3.7.3)
Requirement already satisfied, skipping upgrade: glob2 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.6)
Requirement already satisfied, skipping upgrade: pip>=19.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (19.0.3)
Requirement already satisfied, skipping upgrade: requirements_parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.2.0)
Requirement already satisfied, skipping upgrade: setuptools in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (40.8.0)
Requirement already satisfied, skipping upgrade: pypandoc in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.8.5)
Requirement already satisfied, skipping upgrade: sphinx_fontawesome in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.0.6)
Requirement already satisfied, skipping upgrade: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.3)
Requirement already satisfied, skipping upgrade: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (4.2.0)
Requirement already satisfied, skipping upgrade: sphinxprettysearchresults in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.3.5)
Requirement already satisfied, skipping upgrade: abduct in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: attrdict in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: configobj in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (5.0.6)
Requirement already satisfied, skipping upgrade: diskcache in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.1.1)
Requirement already satisfied, skipping upgrade: gitpython in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.1.11)
Requirement already satisfied, skipping upgrade: humanfriendly in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (4.18)
Requirement already satisfied, skipping upgrade: mendeleev in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.4.4)
Requirement already satisfied, skipping upgrade: numpy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.16.2)
Requirement already satisfied, skipping upgrade: objsize in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.3.2)
Requirement already satisfied, skipping upgrade: openpyxl>=2.6.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.6.1)
Requirement already satisfied, skipping upgrade: pint>=0.9 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.9)
Requirement already satisfied, skipping upgrade: pronto in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.12.1)
Requirement already satisfied, skipping upgrade: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.13)
Requirement already satisfied, skipping upgrade: pyexcel_io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.14)
Requirement already satisfied, skipping upgrade: pygithub in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.43.5)
Requirement already satisfied, skipping upgrade: pyyaml>=5.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (5.1.2)
Requirement already satisfied, skipping upgrade: qualname in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.1.0)
Requirement already satisfied, skipping upgrade: requests in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.21.0)
Requirement already satisfied, skipping upgrade: six in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.12.0)
Requirement already satisfied, skipping upgrade: xlsxwriter in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.1.5)
Requirement already satisfied, skipping upgrade: capturer in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: logging2 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.1.2)
Requirement already satisfied, skipping upgrade: matplotlib in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.0.3)
Requirement already satisfied, skipping upgrade: mock in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: openbabel in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.4.1)
Requirement already satisfied, skipping upgrade: pyjnius in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: quilt in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.9.15)
Requirement already satisfied, skipping upgrade: scipy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: wheel>=0.25.0 in /usr/local/lib/python3.6/site-packages (from pypandoc->pkg-utils[all]) (0.33.1)
Requirement already satisfied, skipping upgrade: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.14)
Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: packaging in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (19.0)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.6.0)
Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.7.12)
Requirement already satisfied, skipping upgrade: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.10)
Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.3.1)
Requirement already satisfied, skipping upgrade: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.22.2)
Requirement already satisfied, skipping upgrade: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.2.1)
Requirement already satisfied, skipping upgrade: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->wc-utils[all]) (0.5.5)
Requirement already satisfied, skipping upgrade: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->wc-utils[all]) (2.0.5)
Requirement already satisfied, skipping upgrade: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.8.post1)
Requirement already satisfied, skipping upgrade: pandas in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.24.1)
Requirement already satisfied, skipping upgrade: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.4.1)
Requirement already satisfied, skipping upgrade: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (1.3.1)
Requirement already satisfied, skipping upgrade: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: texttable>=0.8.2 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (1.6.1)
Requirement already satisfied, skipping upgrade: lml>=0.0.4 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (0.0.9)
Requirement already satisfied, skipping upgrade: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->wc-utils[all]) (1.2.5)
Requirement already satisfied, skipping upgrade: pyjwt in /usr/local/lib/python3.6/site-packages (from pygithub->wc-utils[all]) (1.7.1)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (3.0.4)
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2.8)
Requirement already satisfied, skipping upgrade: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (1.24.1)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2019.3.9)
Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.3.1)
Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.8.0)
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Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->wc-utils[all]) (5.1.3)
Requirement already satisfied, skipping upgrade: cython in /usr/local/lib/python3.6/site-packages (from pyjnius->wc-utils[all]) (0.29.6)
Requirement already satisfied, skipping upgrade: tqdm>=4.11.2 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (4.31.1)
Requirement already satisfied, skipping upgrade: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.12.1)
Requirement already satisfied, skipping upgrade: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.4.3)
Requirement already satisfied, skipping upgrade: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.17.1)
Requirement already satisfied, skipping upgrade: pytz>=0a in /usr/local/lib/python3.6/site-packages (from babel!=2.0,>=1.3->sphinx>=1.8->pkg-utils[all]) (2018.9)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from Jinja2>=2.3->sphinx>=1.8->pkg-utils[all]) (1.1.1)
Requirement already satisfied, skipping upgrade: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->pkg-utils[all]) (1.0.6)
Requirement already satisfied, skipping upgrade: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->wc-utils[all]) (2.0.5)
Requirement already satisfied, skipping upgrade: wrapt<2,>=1 in /usr/local/lib/python3.6/site-packages (from Deprecated->pygithub->wc-utils[all]) (1.11.1)
Building wheels for collected packages: pkg-utils, wc-utils
Building wheel for pkg-utils (setup.py): started
Building wheel for pkg-utils (setup.py): finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-0ec2_4j2/wheels/57/3a/20/6f82ae6d2e86c270594fde48c8eb5bd0f1c901e3afc411cd4f
Building wheel for wc-utils (setup.py): started
Building wheel for wc-utils (setup.py): finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-0ec2_4j2/wheels/33/7d/4c/660999fd6582d65839f94335bf2e65501591e27798b0871c35
Successfully built pkg-utils wc-utils
Installing collected packages: pkg-utils, wc-utils
Found existing installation: pkg-utils 0.0.4
Uninstalling pkg-utils-0.0.4:
Successfully uninstalled pkg-utils-0.0.4
Found existing installation: wc-utils 0.0.9
Uninstalling wc-utils-0.0.9:
Successfully uninstalled wc-utils-0.0.9
Successfully installed pkg-utils-0.0.4 wc-utils-0.0.9
Collecting pkg-utils[all] from git+https://github.com/KarrLab/pkg_utils.git#egg=pkg-utils[all]
Cloning https://github.com/KarrLab/pkg_utils.git to /tmp/pip-install-2gozvtws/pkg-utils
Collecting wc-utils[all] from git+https://github.com/KarrLab/wc_utils.git#egg=wc-utils[all]
Cloning https://github.com/KarrLab/wc_utils.git to /tmp/pip-install-2gozvtws/wc-utils
Requirement already satisfied, skipping upgrade: configparser in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (3.7.3)
Requirement already satisfied, skipping upgrade: glob2 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.6)
Requirement already satisfied, skipping upgrade: pip>=19.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (19.0.3)
Requirement already satisfied, skipping upgrade: requirements_parser>=0.2.0 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.2.0)
Requirement already satisfied, skipping upgrade: setuptools in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (40.8.0)
Requirement already satisfied, skipping upgrade: pypandoc in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: sphinx>=1.8 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (1.8.5)
Requirement already satisfied, skipping upgrade: sphinx_fontawesome in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.0.6)
Requirement already satisfied, skipping upgrade: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.3)
Requirement already satisfied, skipping upgrade: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_bibtex in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.4.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_spelling in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (4.2.0)
Requirement already satisfied, skipping upgrade: sphinxprettysearchresults in /usr/local/lib/python3.6/site-packages (from pkg-utils[all]) (0.3.5)
Requirement already satisfied, skipping upgrade: abduct in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: attrdict in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: configobj in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (5.0.6)
Requirement already satisfied, skipping upgrade: diskcache in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.1.1)
Requirement already satisfied, skipping upgrade: gitpython in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.1.11)
Requirement already satisfied, skipping upgrade: humanfriendly in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (4.18)
Requirement already satisfied, skipping upgrade: mendeleev in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.4.4)
Requirement already satisfied, skipping upgrade: numpy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.16.2)
Requirement already satisfied, skipping upgrade: objsize in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.3.2)
Requirement already satisfied, skipping upgrade: openpyxl>=2.6.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.6.1)
Requirement already satisfied, skipping upgrade: pint>=0.9 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.9)
Requirement already satisfied, skipping upgrade: pronto in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.12.1)
Requirement already satisfied, skipping upgrade: pyexcel>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.13)
Requirement already satisfied, skipping upgrade: pyexcel_io>=0.5.9.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.5.14)
Requirement already satisfied, skipping upgrade: pygithub in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.43.5)
Requirement already satisfied, skipping upgrade: pyyaml>=5.1 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (5.1.2)
Requirement already satisfied, skipping upgrade: qualname in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.1.0)
Requirement already satisfied, skipping upgrade: requests in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.21.0)
Requirement already satisfied, skipping upgrade: six in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.12.0)
Requirement already satisfied, skipping upgrade: xlsxwriter in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.1.5)
Requirement already satisfied, skipping upgrade: capturer in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: logging2 in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (0.1.2)
Requirement already satisfied, skipping upgrade: matplotlib in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (3.0.3)
Requirement already satisfied, skipping upgrade: mock in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: openbabel in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.4.1)
Requirement already satisfied, skipping upgrade: pyjnius in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: quilt in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (2.9.15)
Requirement already satisfied, skipping upgrade: scipy in /usr/local/lib/python3.6/site-packages (from wc-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: wheel>=0.25.0 in /usr/local/lib/python3.6/site-packages (from pypandoc->pkg-utils[all]) (0.33.1)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.3.1)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.6.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: docutils>=0.11 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.14)
Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.7.12)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.10)
Requirement already satisfied, skipping upgrade: imagesize in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: packaging in /usr/local/lib/python3.6/site-packages (from sphinx>=1.8->pkg-utils[all]) (19.0)
Requirement already satisfied, skipping upgrade: oset>=0.1.3 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.2.1)
Requirement already satisfied, skipping upgrade: pybtex>=0.20 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.22.2)
Requirement already satisfied, skipping upgrade: PyEnchant>=1.6.5 in /usr/local/lib/python3.6/site-packages (from sphinxcontrib_spelling->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: contextlib2 in /usr/local/lib/python3.6/site-packages (from abduct->wc-utils[all]) (0.5.5)
Requirement already satisfied, skipping upgrade: gitdb2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitpython->wc-utils[all]) (2.0.5)
Requirement already satisfied, skipping upgrade: colorama in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.4.1)
Requirement already satisfied, skipping upgrade: pyfiglet in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.8.post1)
Requirement already satisfied, skipping upgrade: sqlalchemy in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (1.3.1)
Requirement already satisfied, skipping upgrade: pandas in /usr/local/lib/python3.6/site-packages (from mendeleev->wc-utils[all]) (0.24.1)
Requirement already satisfied, skipping upgrade: et-xmlfile in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: jdcal in /usr/local/lib/python3.6/site-packages (from openpyxl>=2.6.1->wc-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: lml>=0.0.4 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (0.0.9)
Requirement already satisfied, skipping upgrade: texttable>=0.8.2 in /usr/local/lib/python3.6/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (1.6.1)
Requirement already satisfied, skipping upgrade: pyjwt in /usr/local/lib/python3.6/site-packages (from pygithub->wc-utils[all]) (1.7.1)
Requirement already satisfied, skipping upgrade: Deprecated in /usr/local/lib/python3.6/site-packages (from pygithub->wc-utils[all]) (1.2.5)
Requirement already satisfied, skipping upgrade: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (1.24.1)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2019.3.9)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (3.0.4)
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /usr/local/lib/python3.6/site-packages (from requests->wc-utils[all]) (2.8)
Requirement already satisfied, skipping upgrade: cycler>=0.10 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (0.10.0)
Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.3.1)
Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /usr/local/lib/python3.6/site-packages (from matplotlib->wc-utils[all]) (2.8.0)
Requirement already satisfied, skipping upgrade: pbr>=0.11 in /usr/local/lib/python3.6/site-packages (from mock->wc-utils[all]) (5.1.3)
Requirement already satisfied, skipping upgrade: cython in /usr/local/lib/python3.6/site-packages (from pyjnius->wc-utils[all]) (0.29.6)
Requirement already satisfied, skipping upgrade: tqdm>=4.11.2 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (4.31.1)
Requirement already satisfied, skipping upgrade: future>=0.16.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.17.1)
Requirement already satisfied, skipping upgrade: appdirs>=1.4.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.4.3)
Requirement already satisfied, skipping upgrade: pyarrow>=0.9.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (0.12.1)
Requirement already satisfied, skipping upgrade: xlrd>=1.0.0 in /usr/local/lib/python3.6/site-packages (from quilt->wc-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: pytz>=0a in /usr/local/lib/python3.6/site-packages (from babel!=2.0,>=1.3->sphinx>=1.8->pkg-utils[all]) (2018.9)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /usr/local/lib/python3.6/site-packages (from Jinja2>=2.3->sphinx>=1.8->pkg-utils[all]) (1.1.1)
Requirement already satisfied, skipping upgrade: latexcodec>=1.0.4 in /usr/local/lib/python3.6/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->pkg-utils[all]) (1.0.6)
Requirement already satisfied, skipping upgrade: smmap2>=2.0.0 in /usr/local/lib/python3.6/site-packages (from gitdb2>=2.0.0->gitpython->wc-utils[all]) (2.0.5)
Requirement already satisfied, skipping upgrade: wrapt<2,>=1 in /usr/local/lib/python3.6/site-packages (from Deprecated->pygithub->wc-utils[all]) (1.11.1)
Building wheels for collected packages: pkg-utils, wc-utils
Building wheel for pkg-utils (setup.py): started
Building wheel for pkg-utils (setup.py): finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-wm2lix1i/wheels/57/3a/20/6f82ae6d2e86c270594fde48c8eb5bd0f1c901e3afc411cd4f
Building wheel for wc-utils (setup.py): started
Building wheel for wc-utils (setup.py): finished with status 'done'
Stored in directory: /tmp/pip-ephem-wheel-cache-wm2lix1i/wheels/33/7d/4c/660999fd6582d65839f94335bf2e65501591e27798b0871c35
Successfully built pkg-utils wc-utils
Installing collected packages: pkg-utils, wc-utils
Found existing installation: pkg-utils 0.0.4
Uninstalling pkg-utils-0.0.4:
Successfully uninstalled pkg-utils-0.0.4
Found existing installation: wc-utils 0.0.9
Uninstalling wc-utils-0.0.9:
Successfully uninstalled wc-utils-0.0.9
Successfully installed pkg-utils-0.0.4 wc-utils-0.0.9
|
|---|
| Standard error | You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
You are using pip version 19.0.3, however version 19.2.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upgrade_requirements_k... |
project/tests/test_core.py |
544 |
Pass |
0.248 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1793 |
Pass |
2.244 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1817 |
Pass |
0.247 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1762 |
Pass |
2.068 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
=========================== 1 passed in 0.02 seconds ===========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1785 |
Pass |
0.261 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_documentation_t... |
project/tests/test_core.py |
1910 |
Pass |
0.975 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_package_to_pypi |
project/tests/test_core.py |
2528 |
Pass |
35.527 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_visualize_package_depe... |
project/tests/test_core.py |
2094 |
Pass |
0.697 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__get_test_cases |
project/tests/test_core.py |
679 |
Pass |
0.499 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | ============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0 -- /usr/local/bin/python3.6
cachedir: .pytest_cache
rootdir: /root, inifile: pytest.ini
collecting ... collected 84 items
<Module project/tests/test_api.py>
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2018-03-12
:Copyright: 2018, Karr Lab
:License: MIT
<UnitTestCase ApiTestCase>
<TestCaseFunction test>
<Module project/tests/test_core.py>
Tests karr_lab_build_utils.
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2016-08-03
:Copyright: 2016-2018, Karr Lab
:License: MIT
<UnitTestCase TestKarrLabBuildUtils>
<TestCaseFunction test_BuildHelperError>
<TestCaseFunction test__get_test_cases>
<TestCaseFunction test__run_docker_command_capture_stdout>
<TestCaseFunction test__run_docker_command_exception>
<TestCaseFunction test_analyze_package>
<TestCaseFunction test_archive_coverage_report>
<TestCaseFunction test_archive_test_report>
<TestCaseFunction test_archive_test_report_err>
<TestCaseFunction test_archive_test_report_no_repo>
<TestCaseFunction test_are_package_dependencies_acyclic>
<TestCaseFunction test_combine_coverage_reports>
<TestCaseFunction test_combine_coverage_reports_no_files>
<TestCaseFunction test_compile_downstream_dependencies>
<TestCaseFunction test_create_code_climate_github_webhook>
<TestCaseFunction test_create_documentation_template>
<TestCaseFunction test_create_documentation_template_error>
<TestCaseFunction test_create_package>
<TestCaseFunction test_create_repository>
<TestCaseFunction test_delete_circleci_environment_variables>
test API
<TestCaseFunction test_do_post_test_tasks>
<TestCaseFunction test_docker_help>
<TestCaseFunction test_download_install_package_config_files>
<TestCaseFunction test_download_package_config_files>
<TestCaseFunction test_dummy_test>
<TestCaseFunction test_find_missing_requirements>
<TestCaseFunction test_find_unused_requirements>
<TestCaseFunction test_follow_circleci_build>
test API
<TestCaseFunction test_follow_circleci_build_error>
<TestCaseFunction test_get_circleci_environment_variables>
test API
<TestCaseFunction test_get_config>
<TestCaseFunction test_get_test_results>
<TestCaseFunction test_get_version>
<TestCaseFunction test_install_package_config_files>
<TestCaseFunction test_install_requirements>
<TestCaseFunction test_install_requirements_no_file>
<TestCaseFunction test_log_environment>
<TestCaseFunction test_low_level_docker_commands>
<TestCaseFunction test_make_and_archive_reports>
<TestCaseFunction test_make_and_archive_reports_with_missing_req>
<TestCaseFunction test_make_documentation>
<TestCaseFunction test_make_documentation_error>
<TestCaseFunction test_no_build_num>
<TestCaseFunction test_raw_cli>
<TestCaseFunction test_run_method_and_capture_stderr>
<TestCaseFunction test_run_tests>
<TestCaseFunction test_run_tests_default_path>
<TestCaseFunction test_run_tests_docker>
<TestCaseFunction test_run_tests_error>
<TestCaseFunction test_run_tests_multiple_workers>
<TestCaseFunction test_run_tests_unsupported_env>
<TestCaseFunction test_run_tests_with_test_path_env_var>
<TestCaseFunction test_run_tests_with_verbose>
<TestCaseFunction test_send_email_notifications_dry_run>
<TestCaseFunction test_send_email_notifications_existing_error>
<TestCaseFunction test_send_email_notifications_fixed>
<TestCaseFunction test_send_email_notifications_no_commit>
<TestCaseFunction test_send_email_notifications_no_failure>
<TestCaseFunction test_send_email_notifications_no_previous_builds>
<TestCaseFunction test_send_email_notifications_no_upstream>
<TestCaseFunction test_send_email_notifications_send_email>
<TestCaseFunction test_send_email_notifications_tests_exit_code_failure>
<TestCaseFunction test_set_circleci_environment_variables>
test API
<TestCaseFunction test_setup_repository>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_already_queued>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_dry_run>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_downstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_trigger_original_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_error>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_upstream>
<TestCaseFunction test_unsupported_test_runner>
<TestCaseFunction test_upgrade_karr_lab_packages>
<TestCaseFunction test_upgrade_requirements_karr_lab_reqs>
<TestCaseFunction test_upload_coverage_report_to_code_climate>
<TestCaseFunction test_upload_coverage_report_to_code_climate_no_coverage_files>
<TestCaseFunction test_upload_coverage_report_to_coveralls>
<TestCaseFunction test_upload_coverage_report_to_coveralls_no_coverage_files>
<TestCaseFunction test_upload_documentation_to_docs_server>
<TestCaseFunction test_upload_package_to_pypi>
<TestCaseFunction test_visualize_package_dependencies>
<Function test_dummy_pytest>
<UnitTestCase TestCircleCi>
<TestCaseFunction test_run_tests_circleci>
<TestCaseFunction test_run_tests_circleci_with_ssh_image>
========================= no tests ran in 0.03 seconds =========================
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0 -- /usr/local/bin/python3.6
cachedir: .pytest_cache
rootdir: /root, inifile: pytest.ini
collecting ... collected 84 items
<Module project/tests/test_api.py>
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2018-03-12
:Copyright: 2018, Karr Lab
:License: MIT
<UnitTestCase ApiTestCase>
<TestCaseFunction test>
<Module project/tests/test_core.py>
Tests karr_lab_build_utils.
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2016-08-03
:Copyright: 2016-2018, Karr Lab
:License: MIT
<UnitTestCase TestKarrLabBuildUtils>
<TestCaseFunction test_BuildHelperError>
<TestCaseFunction test__get_test_cases>
<TestCaseFunction test__run_docker_command_capture_stdout>
<TestCaseFunction test__run_docker_command_exception>
<TestCaseFunction test_analyze_package>
<TestCaseFunction test_archive_coverage_report>
<TestCaseFunction test_archive_test_report>
<TestCaseFunction test_archive_test_report_err>
<TestCaseFunction test_archive_test_report_no_repo>
<TestCaseFunction test_are_package_dependencies_acyclic>
<TestCaseFunction test_combine_coverage_reports>
<TestCaseFunction test_combine_coverage_reports_no_files>
<TestCaseFunction test_compile_downstream_dependencies>
<TestCaseFunction test_create_code_climate_github_webhook>
<TestCaseFunction test_create_documentation_template>
<TestCaseFunction test_create_documentation_template_error>
<TestCaseFunction test_create_package>
<TestCaseFunction test_create_repository>
<TestCaseFunction test_delete_circleci_environment_variables>
test API
<TestCaseFunction test_do_post_test_tasks>
<TestCaseFunction test_docker_help>
<TestCaseFunction test_download_install_package_config_files>
<TestCaseFunction test_download_package_config_files>
<TestCaseFunction test_dummy_test>
<TestCaseFunction test_find_missing_requirements>
<TestCaseFunction test_find_unused_requirements>
<TestCaseFunction test_follow_circleci_build>
test API
<TestCaseFunction test_follow_circleci_build_error>
<TestCaseFunction test_get_circleci_environment_variables>
test API
<TestCaseFunction test_get_config>
<TestCaseFunction test_get_test_results>
<TestCaseFunction test_get_version>
<TestCaseFunction test_install_package_config_files>
<TestCaseFunction test_install_requirements>
<TestCaseFunction test_install_requirements_no_file>
<TestCaseFunction test_log_environment>
<TestCaseFunction test_low_level_docker_commands>
<TestCaseFunction test_make_and_archive_reports>
<TestCaseFunction test_make_and_archive_reports_with_missing_req>
<TestCaseFunction test_make_documentation>
<TestCaseFunction test_make_documentation_error>
<TestCaseFunction test_no_build_num>
<TestCaseFunction test_raw_cli>
<TestCaseFunction test_run_method_and_capture_stderr>
<TestCaseFunction test_run_tests>
<TestCaseFunction test_run_tests_default_path>
<TestCaseFunction test_run_tests_docker>
<TestCaseFunction test_run_tests_error>
<TestCaseFunction test_run_tests_multiple_workers>
<TestCaseFunction test_run_tests_unsupported_env>
<TestCaseFunction test_run_tests_with_test_path_env_var>
<TestCaseFunction test_run_tests_with_verbose>
<TestCaseFunction test_send_email_notifications_dry_run>
<TestCaseFunction test_send_email_notifications_existing_error>
<TestCaseFunction test_send_email_notifications_fixed>
<TestCaseFunction test_send_email_notifications_no_commit>
<TestCaseFunction test_send_email_notifications_no_failure>
<TestCaseFunction test_send_email_notifications_no_previous_builds>
<TestCaseFunction test_send_email_notifications_no_upstream>
<TestCaseFunction test_send_email_notifications_send_email>
<TestCaseFunction test_send_email_notifications_tests_exit_code_failure>
<TestCaseFunction test_set_circleci_environment_variables>
test API
<TestCaseFunction test_setup_repository>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_already_queued>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_dry_run>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_downstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_trigger_original_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_error>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_upstream>
<TestCaseFunction test_unsupported_test_runner>
<TestCaseFunction test_upgrade_karr_lab_packages>
<TestCaseFunction test_upgrade_requirements_karr_lab_reqs>
<TestCaseFunction test_upload_coverage_report_to_code_climate>
<TestCaseFunction test_upload_coverage_report_to_code_climate_no_coverage_files>
<TestCaseFunction test_upload_coverage_report_to_coveralls>
<TestCaseFunction test_upload_coverage_report_to_coveralls_no_coverage_files>
<TestCaseFunction test_upload_documentation_to_docs_server>
<TestCaseFunction test_upload_package_to_pypi>
<TestCaseFunction test_visualize_package_dependencies>
<Function test_dummy_pytest>
<UnitTestCase TestCircleCi>
<TestCaseFunction test_run_tests_circleci>
<TestCaseFunction test_run_tests_circleci_with_ssh_image>
========================= no tests ran in 0.03 seconds =========================
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0 -- /usr/local/bin/python3.6
cachedir: .pytest_cache
rootdir: /root, inifile: pytest.ini
collecting ... collected 84 items
<Module project/tests/test_api.py>
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2018-03-12
:Copyright: 2018, Karr Lab
:License: MIT
<UnitTestCase ApiTestCase>
<TestCaseFunction test>
<Module project/tests/test_core.py>
Tests karr_lab_build_utils.
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2016-08-03
:Copyright: 2016-2018, Karr Lab
:License: MIT
<UnitTestCase TestKarrLabBuildUtils>
<TestCaseFunction test_BuildHelperError>
<TestCaseFunction test__get_test_cases>
<TestCaseFunction test__run_docker_command_capture_stdout>
<TestCaseFunction test__run_docker_command_exception>
<TestCaseFunction test_analyze_package>
<TestCaseFunction test_archive_coverage_report>
<TestCaseFunction test_archive_test_report>
<TestCaseFunction test_archive_test_report_err>
<TestCaseFunction test_archive_test_report_no_repo>
<TestCaseFunction test_are_package_dependencies_acyclic>
<TestCaseFunction test_combine_coverage_reports>
<TestCaseFunction test_combine_coverage_reports_no_files>
<TestCaseFunction test_compile_downstream_dependencies>
<TestCaseFunction test_create_code_climate_github_webhook>
<TestCaseFunction test_create_documentation_template>
<TestCaseFunction test_create_documentation_template_error>
<TestCaseFunction test_create_package>
<TestCaseFunction test_create_repository>
<TestCaseFunction test_delete_circleci_environment_variables>
test API
<TestCaseFunction test_do_post_test_tasks>
<TestCaseFunction test_docker_help>
<TestCaseFunction test_download_install_package_config_files>
<TestCaseFunction test_download_package_config_files>
<TestCaseFunction test_dummy_test>
<TestCaseFunction test_find_missing_requirements>
<TestCaseFunction test_find_unused_requirements>
<TestCaseFunction test_follow_circleci_build>
test API
<TestCaseFunction test_follow_circleci_build_error>
<TestCaseFunction test_get_circleci_environment_variables>
test API
<TestCaseFunction test_get_config>
<TestCaseFunction test_get_test_results>
<TestCaseFunction test_get_version>
<TestCaseFunction test_install_package_config_files>
<TestCaseFunction test_install_requirements>
<TestCaseFunction test_install_requirements_no_file>
<TestCaseFunction test_log_environment>
<TestCaseFunction test_low_level_docker_commands>
<TestCaseFunction test_make_and_archive_reports>
<TestCaseFunction test_make_and_archive_reports_with_missing_req>
<TestCaseFunction test_make_documentation>
<TestCaseFunction test_make_documentation_error>
<TestCaseFunction test_no_build_num>
<TestCaseFunction test_raw_cli>
<TestCaseFunction test_run_method_and_capture_stderr>
<TestCaseFunction test_run_tests>
<TestCaseFunction test_run_tests_default_path>
<TestCaseFunction test_run_tests_docker>
<TestCaseFunction test_run_tests_error>
<TestCaseFunction test_run_tests_multiple_workers>
<TestCaseFunction test_run_tests_unsupported_env>
<TestCaseFunction test_run_tests_with_test_path_env_var>
<TestCaseFunction test_run_tests_with_verbose>
<TestCaseFunction test_send_email_notifications_dry_run>
<TestCaseFunction test_send_email_notifications_existing_error>
<TestCaseFunction test_send_email_notifications_fixed>
<TestCaseFunction test_send_email_notifications_no_commit>
<TestCaseFunction test_send_email_notifications_no_failure>
<TestCaseFunction test_send_email_notifications_no_previous_builds>
<TestCaseFunction test_send_email_notifications_no_upstream>
<TestCaseFunction test_send_email_notifications_send_email>
<TestCaseFunction test_send_email_notifications_tests_exit_code_failure>
<TestCaseFunction test_set_circleci_environment_variables>
test API
<TestCaseFunction test_setup_repository>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_already_queued>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_dry_run>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_downstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_trigger_original_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_error>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_upstream>
<TestCaseFunction test_unsupported_test_runner>
<TestCaseFunction test_upgrade_karr_lab_packages>
<TestCaseFunction test_upgrade_requirements_karr_lab_reqs>
<TestCaseFunction test_upload_coverage_report_to_code_climate>
<TestCaseFunction test_upload_coverage_report_to_code_climate_no_coverage_files>
<TestCaseFunction test_upload_coverage_report_to_coveralls>
<TestCaseFunction test_upload_coverage_report_to_coveralls_no_coverage_files>
<TestCaseFunction test_upload_documentation_to_docs_server>
<TestCaseFunction test_upload_package_to_pypi>
<TestCaseFunction test_visualize_package_dependencies>
<Function test_dummy_pytest>
<UnitTestCase TestCircleCi>
<TestCaseFunction test_run_tests_circleci>
<TestCaseFunction test_run_tests_circleci_with_ssh_image>
========================= no tests ran in 0.03 seconds =========================
============================= test session starts ==============================
platform linux -- Python 3.6.8, pytest-4.3.1, py-1.8.0, pluggy-0.9.0 -- /usr/local/bin/python3.6
cachedir: .pytest_cache
rootdir: /root, inifile: pytest.ini
collecting ... collected 84 items
<Module project/tests/test_api.py>
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2018-03-12
:Copyright: 2018, Karr Lab
:License: MIT
<UnitTestCase ApiTestCase>
<TestCaseFunction test>
<Module project/tests/test_core.py>
Tests karr_lab_build_utils.
:Author: Jonathan Karr <karr@mssm.edu>
:Date: 2016-08-03
:Copyright: 2016-2018, Karr Lab
:License: MIT
<UnitTestCase TestKarrLabBuildUtils>
<TestCaseFunction test_BuildHelperError>
<TestCaseFunction test__get_test_cases>
<TestCaseFunction test__run_docker_command_capture_stdout>
<TestCaseFunction test__run_docker_command_exception>
<TestCaseFunction test_analyze_package>
<TestCaseFunction test_archive_coverage_report>
<TestCaseFunction test_archive_test_report>
<TestCaseFunction test_archive_test_report_err>
<TestCaseFunction test_archive_test_report_no_repo>
<TestCaseFunction test_are_package_dependencies_acyclic>
<TestCaseFunction test_combine_coverage_reports>
<TestCaseFunction test_combine_coverage_reports_no_files>
<TestCaseFunction test_compile_downstream_dependencies>
<TestCaseFunction test_create_code_climate_github_webhook>
<TestCaseFunction test_create_documentation_template>
<TestCaseFunction test_create_documentation_template_error>
<TestCaseFunction test_create_package>
<TestCaseFunction test_create_repository>
<TestCaseFunction test_delete_circleci_environment_variables>
test API
<TestCaseFunction test_do_post_test_tasks>
<TestCaseFunction test_docker_help>
<TestCaseFunction test_download_install_package_config_files>
<TestCaseFunction test_download_package_config_files>
<TestCaseFunction test_dummy_test>
<TestCaseFunction test_find_missing_requirements>
<TestCaseFunction test_find_unused_requirements>
<TestCaseFunction test_follow_circleci_build>
test API
<TestCaseFunction test_follow_circleci_build_error>
<TestCaseFunction test_get_circleci_environment_variables>
test API
<TestCaseFunction test_get_config>
<TestCaseFunction test_get_test_results>
<TestCaseFunction test_get_version>
<TestCaseFunction test_install_package_config_files>
<TestCaseFunction test_install_requirements>
<TestCaseFunction test_install_requirements_no_file>
<TestCaseFunction test_log_environment>
<TestCaseFunction test_low_level_docker_commands>
<TestCaseFunction test_make_and_archive_reports>
<TestCaseFunction test_make_and_archive_reports_with_missing_req>
<TestCaseFunction test_make_documentation>
<TestCaseFunction test_make_documentation_error>
<TestCaseFunction test_no_build_num>
<TestCaseFunction test_raw_cli>
<TestCaseFunction test_run_method_and_capture_stderr>
<TestCaseFunction test_run_tests>
<TestCaseFunction test_run_tests_default_path>
<TestCaseFunction test_run_tests_docker>
<TestCaseFunction test_run_tests_error>
<TestCaseFunction test_run_tests_multiple_workers>
<TestCaseFunction test_run_tests_unsupported_env>
<TestCaseFunction test_run_tests_with_test_path_env_var>
<TestCaseFunction test_run_tests_with_verbose>
<TestCaseFunction test_send_email_notifications_dry_run>
<TestCaseFunction test_send_email_notifications_existing_error>
<TestCaseFunction test_send_email_notifications_fixed>
<TestCaseFunction test_send_email_notifications_no_commit>
<TestCaseFunction test_send_email_notifications_no_failure>
<TestCaseFunction test_send_email_notifications_no_previous_builds>
<TestCaseFunction test_send_email_notifications_no_upstream>
<TestCaseFunction test_send_email_notifications_send_email>
<TestCaseFunction test_send_email_notifications_tests_exit_code_failure>
<TestCaseFunction test_set_circleci_environment_variables>
test API
<TestCaseFunction test_setup_repository>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_already_queued>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_dry_run>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_downstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_no_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_trigger_original_upstream>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_error>
<TestCaseFunction test_trigger_tests_of_downstream_dependencies_with_upstream>
<TestCaseFunction test_unsupported_test_runner>
<TestCaseFunction test_upgrade_karr_lab_packages>
<TestCaseFunction test_upgrade_requirements_karr_lab_reqs>
<TestCaseFunction test_upload_coverage_report_to_code_climate>
<TestCaseFunction test_upload_coverage_report_to_code_climate_no_coverage_files>
<TestCaseFunction test_upload_coverage_report_to_coveralls>
<TestCaseFunction test_upload_coverage_report_to_coveralls_no_coverage_files>
<TestCaseFunction test_upload_documentation_to_docs_server>
<TestCaseFunction test_upload_package_to_pypi>
<TestCaseFunction test_visualize_package_dependencies>
<Function test_dummy_pytest>
<UnitTestCase TestCircleCi>
<TestCaseFunction test_run_tests_circleci>
<TestCaseFunction test_run_tests_circleci_with_ssh_image>
----- generated xml file: /root/project/tests/reports/latest.0-1.3.6.8.xml -----
========================= no tests ran in 0.05 seconds =========================
|
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__run_docker_command_ca... |
project/tests/test_core.py |
769 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:768: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__run_docker_command_ex... |
project/tests/test_core.py |
780 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Details | project/tests/test_core.py:779: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
