|
project.tests.test_api.ApiTestCase |
test |
project/tests/test_api.py |
13 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_analyze_package |
project/tests/test_core.py |
2477 |
Pass |
39.240 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_coverage_report |
project/tests/test_core.py |
1744 |
Pass |
3.162 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report |
project/tests/test_core.py |
1658 |
Pass |
31.826 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report_err |
project/tests/test_core.py |
1678 |
Pass |
0.603 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_archive_test_report_no... |
project/tests/test_core.py |
1673 |
Pass |
0.310 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_are_package_dependenci... |
project/tests/test_core.py |
2049 |
Pass |
1.438 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_BuildHelperError |
project/tests/test_core.py |
2714 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_combine_coverage_reports |
project/tests/test_core.py |
1697 |
Pass |
0.843 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_combine_coverage_repor... |
project/tests/test_core.py |
1736 |
Pass |
0.305 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_compile_downstream_dep... |
project/tests/test_core.py |
1974 |
Pass |
1.179 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_code_climate_gi... |
project/tests/test_core.py |
493 |
Pass |
1.410 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_documentation_t... |
project/tests/test_core.py |
1824 |
Pass |
0.681 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_documentation_t... |
project/tests/test_core.py |
1861 |
Pass |
0.319 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_package |
project/tests/test_core.py |
123 |
Pass |
14.118 |
Result type | |
Message | |
Details | |
Standard output | This program will guide you through creating a new package.
Creating private remote Git repository "KarrLab/test_a" on GitHub and cloning this repository to "/tmp/tmpsb3kgfbh/test_a"
Visit "https://codeclimate.com/dashboard" and click on the "KarrLab" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_a" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_a" repository and click its "OFF" button
Click the details button for the "KarrLab/test_a" repository
Click the "Settings" menu item
Click the "README BADGE" EMBED" button
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_a" repository and click its "Set Up Project" button
Click the "Start building" button. Note, the first CircleCI build will fail because no code has yet been pushed.
Click the "Project settings" icon
Click the "API permissions" menu item
Click the "Create Token" button
Select "All", enter a label, and click the "Add Token" button
Visit "https://pypi.org/manage/project/test_a/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-a"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
This program will guide you through creating a new package.
Creating public remote Git repository "KarrLab/test_b" on GitHub and cloning this repository to "/tmp/tmpsb3kgfbh/test_b"
Visit "https://codeclimate.com/dashboard" and click on the "Open source" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_b" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_b" repository and click its "OFF" button
Click the details button for the "KarrLab/test_b" repository
Click the "Settings" menu item
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_b" repository and click its "Set Up Project" button
Click the "Start building" button. Note, the first CircleCI build will fail because no code has yet been pushed.
Click the "Project settings" icon
Click the "Checkout SSH keys" button
Click the "Authorize with GitHub" button
Click the "Create and add ... user key" button
Visit "https://readthedocs.org/dashboard/import/?"
Click the "refresh" icon
Find the "test_b" repository and click its "+" button
Click the "Next" button
Click the "Admin" menu item
Click the "Advanced settings" menu item
Set the "Requirements file" to "docs/requirements.rtd.txt"
Set the "Python configuration file" to "docs/conf.py"
Set the "Python interpreter" to "CPython 3.x"
Click the "Maintainers" menu item
Add "karr-lab-daemon" to the maintainers
Click the "Notifications" menu item
Add your email address and click submit
Add "jonrkarr@gmail.com" and click submit
Visit "https://pypi.org/manage/project/test_b/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-b"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
This program will guide you through creating a new package.
Creating public remote Git repository "KarrLab/test_c" on GitHub and cloning this repository to "/tmp/tmpsb3kgfbh/test_c"
Visit "https://codeclimate.com/dashboard" and click on the "Open source" organization.
Click the "Add a repository" button
Click the "Sync now" button
Click the "Add Repo" button for the "test_c" repository
Click the "Repo Settings" link
Cick the "Test coverage" menu item
Cick the "Badges" menu item
Visit "https://coveralls.io"
Click the "ADD REPOS" button
Click the "SYNC REPOS" button
Search for the "KarrLab/test_c" repository and click its "OFF" button
Click the details button for the "KarrLab/test_c" repository
Click the "Settings" menu item
Visit "https://circleci.com/add-projects/gh/KarrLab"
Search for the "test_c" repository and click its "Set Up Project" button
Click the "Start building" button. Note, the first CircleCI build will fail because no code has yet been pushed.
Visit "https://readthedocs.org/dashboard/import/?"
Click the "refresh" icon
Find the "test_c" repository and click its "+" button
Click the "Next" button
Click the "Admin" menu item
Click the "Advanced settings" menu item
Set the "Requirements file" to "docs/requirements.rtd.txt"
Set the "Python configuration file" to "docs/conf.py"
Set the "Python interpreter" to "CPython 3.x"
Click the "Maintainers" menu item
Add "karr-lab-daemon" to the maintainers
Click the "Notifications" menu item
Add your email address and click submit
Add "jonrkarr@gmail.com" and click submit
Visit "https://pypi.org/manage/project/test_c/releases/0.0.1"
Use the "Options" button to delete the file
Enter the project name "test-c"
Click the "Delete file" button
Click the "Collaborators" button
Use the webform to add "karrlab" as an owner
|
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_create_repository |
project/tests/test_core.py |
268 |
Pass |
14.321 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_delete_circleci_enviro... |
project/tests/test_core.py |
460 |
Pass |
1.588 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_docker_help |
project/tests/test_core.py |
714 |
Pass |
0.096 |
Result type | |
Message | |
Details | |
Standard output | usage: karr_lab_build_utils docker [-h]
{remove-container,run-tests-in-container,install-package-to-container,create-container}
...
Docker utilities
optional arguments:
-h, --help show this help message and exit
sub-commands:
{remove-container,run-tests-in-container,install-package-to-container,create-container}
remove-container Remove a Docker container
run-tests-in-container
Run tests in a Docker container
install-package-to-container
Copy and install a package to a Docker container
create-container Create a Docker container for running tests
|
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_download_install_packa... |
project/tests/test_core.py |
2658 |
Pass |
0.641 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_download_package_confi... |
project/tests/test_core.py |
2607 |
Pass |
1.390 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_do_post_test_tasks |
project/tests/test_core.py |
791 |
Pass |
1.818 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core |
test_dummy_pytest |
project/tests/test_core.py |
2753 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_dummy_test |
project/tests/test_core.py |
2739 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_find_missing_requirements |
project/tests/test_core.py |
2514 |
Pass |
18.269 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_find_unused_requirements |
project/tests/test_core.py |
2546 |
Pass |
17.172 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_follow_circleci_build |
project/tests/test_core.py |
379 |
Pass |
2.605 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_follow_circleci_build_... |
project/tests/test_core.py |
390 |
Pass |
0.311 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_circleci_environme... |
project/tests/test_core.py |
406 |
Pass |
0.847 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_config |
project/tests/test_core.py |
2742 |
Pass |
0.005 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_latest_docs_version |
project/tests/test_core.py |
1952 |
Pass |
0.797 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_test_results |
project/tests/test_core.py |
880 |
Pass |
0.375 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_get_version |
project/tests/test_core.py |
2663 |
Pass |
0.567 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_package_config... |
project/tests/test_core.py |
2636 |
Pass |
0.316 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_requirements |
project/tests/test_core.py |
510 |
Pass |
10.207 |
Result type | |
Message | |
Details | |
Standard output | Requirement already satisfied: setuptools in /usr/local/lib/python3.7/site-packages (44.0.0)
Requirement already satisfied: pip in /usr/local/lib/python3.7/site-packages (19.3.1)
Requirement already satisfied: abduct in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 2)) (2.0.1)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 3)) (3.0.4)
Requirement already satisfied: click in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 4)) (7.0)
Requirement already satisfied: configobj in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 6)) (5.0.2)
Requirement already satisfied: coveralls in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 7)) (1.10.0)
Requirement already satisfied: ftputil in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 8)) (3.4)
Requirement already satisfied: gitpython in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 9)) (3.0.5)
Requirement already satisfied: graphviz in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 10)) (0.13.2)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 11)) (2.10.3)
Requirement already satisfied: mock in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 12)) (3.0.5)
Requirement already satisfied: natsort in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 13)) (6.2.0)
Requirement already satisfied: networkx in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 14)) (2.4)
Requirement already satisfied: nose in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 15)) (1.3.7)
Requirement already satisfied: pip>=19.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 16)) (19.3.1)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 17)) (2.0.3)
Requirement already satisfied: pkg_utils[all] in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 18)) (0.0.5)
Requirement already satisfied: pygithub in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 19)) (1.45)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 20)) (2.4.4)
Requirement already satisfied: pypandoc in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 21)) (1.4)
Requirement already satisfied: pytest in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 22)) (5.3.2)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 23)) (2.8.0)
Requirement already satisfied: pyyaml>=5.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 24)) (5.3)
Requirement already satisfied: quilt3>=3.1.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 25)) (3.1.8)
Requirement already satisfied: requests in /usr/local/lib/python3.7/site-packages/requests-2.22.0-py3.7.egg (from -r /tmp/tmpawv9hydu.txt (line 26)) (2.22.0)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 27)) (44.0.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 28)) (2.3.1)
Requirement already satisfied: sphinx_fontawesome in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 29)) (0.0.6)
Requirement already satisfied: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 30)) (0.4.3)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 31)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 32)) (1.0.0)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 33)) (0.1.1)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 34)) (4.3.0)
Requirement already satisfied: sphinxprettysearchresults in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 35)) (0.3.5)
Requirement already satisfied: twine in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 36)) (3.1.1)
Requirement already satisfied: wc_utils[all] in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpawv9hydu.txt (line 37)) (0.0.15)
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Requirement already satisfied: jinja2 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 11)) (2.10.3)
Requirement already satisfied: mock in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 12)) (3.0.5)
Requirement already satisfied: natsort in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 13)) (6.2.0)
Requirement already satisfied: networkx in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 14)) (2.4)
Requirement already satisfied: nose in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 15)) (1.3.7)
Requirement already satisfied: pip>=19.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 16)) (19.3.1)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 17)) (2.0.3)
Requirement already satisfied: pkg_utils[all] in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 18)) (0.0.5)
Requirement already satisfied: pygithub in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 19)) (1.45)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 20)) (2.4.4)
Requirement already satisfied: pypandoc in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 21)) (1.4)
Requirement already satisfied: pytest in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 22)) (5.3.2)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 23)) (2.8.0)
Requirement already satisfied: pyyaml>=5.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 24)) (5.3)
Requirement already satisfied: quilt3>=3.1.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 25)) (3.1.8)
Requirement already satisfied: requests in /usr/local/lib/python3.7/site-packages/requests-2.22.0-py3.7.egg (from -r /tmp/tmpr6asia15.txt (line 26)) (2.22.0)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 27)) (44.0.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 28)) (2.3.1)
Requirement already satisfied: sphinx_fontawesome in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 29)) (0.0.6)
Requirement already satisfied: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 30)) (0.4.3)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 31)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 32)) (1.0.0)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 33)) (0.1.1)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 34)) (4.3.0)
Requirement already satisfied: sphinxprettysearchresults in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 35)) (0.3.5)
Requirement already satisfied: twine in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 36)) (3.1.1)
Requirement already satisfied: wc_utils[all] in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 37)) (0.0.15)
Requirement already satisfied: wheel in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 38)) (0.33.6)
Requirement already satisfied: whichcraft in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 39)) (0.6.1)
Requirement already satisfied: capturer in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpr6asia15.txt (line 40)) (2.4)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.7/site-packages (from abduct->-r /tmp/tmpr6asia15.txt (line 1)) (0.6.0.post1)
Requirement already satisfied: six in /usr/local/lib/python3.7/site-packages/six-1.12.0-py3.7.egg (from attrdict->-r /tmp/tmpr6asia15.txt (line 2)) (1.12.0)
Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.7/site-packages (from coveralls->-r /tmp/tmpr6asia15.txt (line 7)) (0.6.2)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitpython->-r /tmp/tmpr6asia15.txt (line 9)) (2.0.6)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.7/site-packages (from jinja2->-r /tmp/tmpr6asia15.txt (line 11)) (1.1.1)
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.7/site-packages (from networkx->-r /tmp/tmpr6asia15.txt (line 14)) (4.4.1)
Requirement already satisfied: packaging in /usr/local/lib/python3.7/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmpr6asia15.txt (line 17)) (20.0)
Requirement already satisfied: glob2 in /usr/local/lib/python3.7/site-packages (from pkg_utils[all]->-r /tmp/tmpr6asia15.txt (line 18)) (0.7)
Requirement already satisfied: configparser in /usr/local/lib/python3.7/site-packages (from pkg_utils[all]->-r /tmp/tmpr6asia15.txt (line 18)) (4.0.2)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.7/site-packages (from pkg_utils[all]->-r /tmp/tmpr6asia15.txt (line 18)) (0.2.0)
Requirement already satisfied: deprecated in /usr/local/lib/python3.7/site-packages (from pygithub->-r /tmp/tmpr6asia15.txt (line 19)) (1.2.7)
Requirement already satisfied: pyjwt in /usr/local/lib/python3.7/site-packages (from pygithub->-r /tmp/tmpr6asia15.txt (line 19)) (1.7.1)
Requirement already satisfied: astroid<2.4,>=2.3.0 in /usr/local/lib/python3.7/site-packages (from pylint>=2.1.1->-r /tmp/tmpr6asia15.txt (line 20)) (2.3.3)
Requirement already satisfied: isort<5,>=4.2.5 in /usr/local/lib/python3.7/site-packages (from pylint>=2.1.1->-r /tmp/tmpr6asia15.txt (line 20)) (4.3.21)
Requirement already satisfied: mccabe<0.7,>=0.6 in /usr/local/lib/python3.7/site-packages (from pylint>=2.1.1->-r /tmp/tmpr6asia15.txt (line 20)) (0.6.1)
Requirement already satisfied: py>=1.5.0 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpr6asia15.txt (line 22)) (1.8.1)
Requirement already satisfied: importlib-metadata>=0.12; python_version < "3.8" in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpr6asia15.txt (line 22)) (1.3.0)
Requirement already satisfied: wcwidth in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpr6asia15.txt (line 22)) (0.1.8)
Requirement already satisfied: attrs>=17.4.0 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpr6asia15.txt (line 22)) (19.3.0)
Requirement already satisfied: pluggy<1.0,>=0.12 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpr6asia15.txt (line 22)) (0.13.1)
Requirement already satisfied: more-itertools>=4.0.0 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpr6asia15.txt (line 22)) (8.0.2)
Requirement already satisfied: flask-json in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (0.3.4)
Requirement already satisfied: flask in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.1.1)
Requirement already satisfied: boto3>=1.8.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.10.47)
Requirement already satisfied: jsonlines==1.2.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.2.0)
Requirement already satisfied: ruamel.yaml>=0.15.78 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (0.16.5)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.24.2)
Requirement already satisfied: tqdm>=4.26.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (4.41.1)
Requirement already satisfied: flask-cors in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (3.0.8)
Requirement already satisfied: appdirs>=1.4.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.4.3)
Requirement already satisfied: requests-futures==1.0.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.0.0)
Requirement already satisfied: aws-requests-auth>=0.4.2 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (0.4.2)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.7/site-packages/chardet-3.0.4-py3.7.egg (from requests->-r /tmp/tmpr6asia15.txt (line 26)) (3.0.4)
Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.7/site-packages/idna-2.8-py3.7.egg (from requests->-r /tmp/tmpr6asia15.txt (line 26)) (2.8)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.7/site-packages/certifi-2019.9.11-py3.7.egg (from requests->-r /tmp/tmpr6asia15.txt (line 26)) (2019.9.11)
Requirement already satisfied: sphinxcontrib-devhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (1.0.1)
Requirement already satisfied: docutils>=0.12 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (0.15.2)
Requirement already satisfied: sphinxcontrib-qthelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (1.0.2)
Requirement already satisfied: Pygments>=2.0 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (2.5.2)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (2.8.0)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (0.7.12)
Requirement already satisfied: sphinxcontrib-applehelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (1.0.1)
Requirement already satisfied: sphinxcontrib-serializinghtml in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (1.1.3)
Requirement already satisfied: sphinxcontrib-jsmath in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (1.0.1)
Requirement already satisfied: imagesize in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (1.2.0)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (2.0.0)
Requirement already satisfied: sphinxcontrib-htmlhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (1.0.2)
Requirement already satisfied: oset>=0.1.3 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpr6asia15.txt (line 32)) (0.1.3)
Requirement already satisfied: pybtex>=0.20 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpr6asia15.txt (line 32)) (0.22.2)
Requirement already satisfied: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpr6asia15.txt (line 32)) (0.2.2)
Requirement already satisfied: PyEnchant>=1.6.5 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_spelling->-r /tmp/tmpr6asia15.txt (line 34)) (2.0.0)
Requirement already satisfied: requests-toolbelt!=0.9.0,>=0.8.0 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpr6asia15.txt (line 36)) (0.9.1)
Requirement already satisfied: keyring>=15.1 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpr6asia15.txt (line 36)) (21.0.0)
Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpr6asia15.txt (line 36)) (1.5.0.1)
Requirement already satisfied: readme-renderer>=21.0 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpr6asia15.txt (line 36)) (24.0)
Requirement already satisfied: pyexcel-io>=0.5.9.1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.5.20)
Requirement already satisfied: xlsxwriter in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.2.7)
Requirement already satisfied: dataclasses in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.6)
Requirement already satisfied: pint>=0.10 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.10)
Requirement already satisfied: qualname in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.1.0)
Requirement already satisfied: openpyxl<=3.0.1,>=2.6.1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (3.0.1)
Requirement already satisfied: mendeleev in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.5.1)
Requirement already satisfied: diskcache in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (4.1.0)
Requirement already satisfied: objsize in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.3.2)
Requirement already satisfied: humanfriendly in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (4.18)
Requirement already satisfied: numpy in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.18.1)
Requirement already satisfied: pronto>=1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.1.3)
Requirement already satisfied: pyexcel>=0.5.9.1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.5.15)
Requirement already satisfied: logging2; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.1.2)
Requirement already satisfied: matplotlib; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (3.1.2)
Requirement already satisfied: openbabel; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (2.4.1)
Requirement already satisfied: pyjnius; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.2.1)
Requirement already satisfied: scipy; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.4.1)
Requirement already satisfied: smmap2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitdb2>=2.0.0->gitpython->-r /tmp/tmpr6asia15.txt (line 9)) (2.0.5)
Requirement already satisfied: pyparsing>=2.0.2 in /usr/local/lib/python3.7/site-packages (from packaging->pip_check_reqs>=2.0.3->-r /tmp/tmpr6asia15.txt (line 17)) (2.4.6)
Requirement already satisfied: wrapt<2,>=1.10 in /usr/local/lib/python3.7/site-packages (from deprecated->pygithub->-r /tmp/tmpr6asia15.txt (line 19)) (1.11.2)
Requirement already satisfied: lazy-object-proxy==1.4.* in /usr/local/lib/python3.7/site-packages (from astroid<2.4,>=2.3.0->pylint>=2.1.1->-r /tmp/tmpr6asia15.txt (line 20)) (1.4.3)
Requirement already satisfied: typed-ast<1.5,>=1.4.0; implementation_name == "cpython" and python_version < "3.8" in /usr/local/lib/python3.7/site-packages (from astroid<2.4,>=2.3.0->pylint>=2.1.1->-r /tmp/tmpr6asia15.txt (line 20)) (1.4.0)
Requirement already satisfied: zipp>=0.5 in /usr/local/lib/python3.7/site-packages (from importlib-metadata>=0.12; python_version < "3.8"->pytest->-r /tmp/tmpr6asia15.txt (line 22)) (0.6.0)
Requirement already satisfied: itsdangerous>=0.24 in /usr/local/lib/python3.7/site-packages (from flask->quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.1.0)
Requirement already satisfied: Werkzeug>=0.15 in /usr/local/lib/python3.7/site-packages (from flask->quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (0.16.0)
Requirement already satisfied: botocore<1.14.0,>=1.13.47 in /usr/local/lib/python3.7/site-packages (from boto3>=1.8.0->quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (1.13.47)
Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /usr/local/lib/python3.7/site-packages (from boto3>=1.8.0->quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (0.9.4)
Requirement already satisfied: s3transfer<0.3.0,>=0.2.0 in /usr/local/lib/python3.7/site-packages (from boto3>=1.8.0->quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (0.2.1)
Requirement already satisfied: ruamel.yaml.clib>=0.1.2; platform_python_implementation == "CPython" and python_version < "3.8" in /usr/local/lib/python3.7/site-packages (from ruamel.yaml>=0.15.78->quilt3>=3.1.3->-r /tmp/tmpr6asia15.txt (line 25)) (0.2.0)
Requirement already satisfied: pytz>=2015.7 in /usr/local/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.8->-r /tmp/tmpr6asia15.txt (line 28)) (2019.3)
Requirement already satisfied: latexcodec>=1.0.4 in /usr/local/lib/python3.7/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->-r /tmp/tmpr6asia15.txt (line 32)) (1.0.7)
Requirement already satisfied: secretstorage; sys_platform == "linux" in /usr/local/lib/python3.7/site-packages (from keyring>=15.1->twine->-r /tmp/tmpr6asia15.txt (line 36)) (3.1.1)
Requirement already satisfied: bleach>=2.1.0 in /usr/local/lib/python3.7/site-packages (from readme-renderer>=21.0->twine->-r /tmp/tmpr6asia15.txt (line 36)) (3.1.0)
Requirement already satisfied: lml>=0.0.4 in /usr/local/lib/python3.7/site-packages (from pyexcel-io>=0.5.9.1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.0.9)
Requirement already satisfied: et-xmlfile in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.0.1)
Requirement already satisfied: jdcal in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.4.1)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.3.12)
Requirement already satisfied: pandas in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.25.3)
Requirement already satisfied: colorama in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.4.3)
Requirement already satisfied: pyfiglet in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.8.post1)
Requirement already satisfied: contexter~=0.1.4 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.1.4)
Requirement already satisfied: fastobo~=0.6.0 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.6.1)
Requirement already satisfied: nanoset~=0.1.2; platform_python_implementation == "CPython" in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.1.3)
Requirement already satisfied: frozendict~=1.2 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.2)
Requirement already satisfied: texttable>=0.8.2 in /usr/local/lib/python3.7/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.6.2)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.7/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (1.1.0)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.7/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.10.0)
Requirement already satisfied: cython in /usr/local/lib/python3.7/site-packages (from pyjnius; extra == "all"->wc_utils[all]->-r /tmp/tmpr6asia15.txt (line 37)) (0.29.14)
Requirement already satisfied: jeepney in /usr/local/lib/python3.7/site-packages (from secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpr6asia15.txt (line 36)) (0.4.2)
Requirement already satisfied: cryptography in /usr/local/lib/python3.7/site-packages (from secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpr6asia15.txt (line 36)) (2.8)
Requirement already satisfied: webencodings in /usr/local/lib/python3.7/site-packages (from bleach>=2.1.0->readme-renderer>=21.0->twine->-r /tmp/tmpr6asia15.txt (line 36)) (0.5.1)
Requirement already satisfied: cffi!=1.11.3,>=1.8 in /usr/local/lib/python3.7/site-packages (from cryptography->secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpr6asia15.txt (line 36)) (1.13.2)
Requirement already satisfied: pycparser in /usr/local/lib/python3.7/site-packages (from cffi!=1.11.3,>=1.8->cryptography->secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpr6asia15.txt (line 36)) (2.19)
|
Standard error | WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_install_requirements_n... |
project/tests/test_core.py |
521 |
Pass |
4.945 |
Result type | |
Message | |
Details | |
Standard output | Requirement already satisfied: setuptools in /usr/local/lib/python3.7/site-packages (44.0.0)
Requirement already satisfied: pip in /usr/local/lib/python3.7/site-packages (19.3.1)
Requirement already satisfied: abduct in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 1)) (2.0.1)
Requirement already satisfied: attrdict in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 2)) (2.0.1)
Requirement already satisfied: cement>=3.0.0 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 3)) (3.0.4)
Requirement already satisfied: click in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 4)) (7.0)
Requirement already satisfied: configobj in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 5)) (5.0.6)
Requirement already satisfied: coverage in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 6)) (5.0.2)
Requirement already satisfied: coveralls in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 7)) (1.10.0)
Requirement already satisfied: ftputil in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 8)) (3.4)
Requirement already satisfied: gitpython in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 9)) (3.0.5)
Requirement already satisfied: graphviz in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 10)) (0.13.2)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 11)) (2.10.3)
Requirement already satisfied: mock in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 12)) (3.0.5)
Requirement already satisfied: natsort in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 13)) (6.2.0)
Requirement already satisfied: networkx in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 14)) (2.4)
Requirement already satisfied: nose in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 15)) (1.3.7)
Requirement already satisfied: pip>=19.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 16)) (19.3.1)
Requirement already satisfied: pip_check_reqs>=2.0.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 17)) (2.0.3)
Requirement already satisfied: pkg_utils[all] in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 18)) (0.0.5)
Requirement already satisfied: pygithub in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 19)) (1.45)
Requirement already satisfied: pylint>=2.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 20)) (2.4.4)
Requirement already satisfied: pypandoc in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 21)) (1.4)
Requirement already satisfied: pytest in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 22)) (5.3.2)
Requirement already satisfied: python_dateutil in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 23)) (2.8.0)
Requirement already satisfied: pyyaml>=5.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 24)) (5.3)
Requirement already satisfied: quilt3>=3.1.3 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 25)) (3.1.8)
Requirement already satisfied: requests in /usr/local/lib/python3.7/site-packages/requests-2.22.0-py3.7.egg (from -r /tmp/tmpbr7ajj94.txt (line 26)) (2.22.0)
Requirement already satisfied: setuptools>=40.0.0 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 27)) (44.0.0)
Requirement already satisfied: sphinx>=1.8 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 28)) (2.3.1)
Requirement already satisfied: sphinx_fontawesome in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 29)) (0.0.6)
Requirement already satisfied: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 30)) (0.4.3)
Requirement already satisfied: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 31)) (0.1.1)
Requirement already satisfied: sphinxcontrib_bibtex in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 32)) (1.0.0)
Requirement already satisfied: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 33)) (0.1.1)
Requirement already satisfied: sphinxcontrib_spelling in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 34)) (4.3.0)
Requirement already satisfied: sphinxprettysearchresults in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 35)) (0.3.5)
Requirement already satisfied: twine in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 36)) (3.1.1)
Requirement already satisfied: wc_utils[all] in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 37)) (0.0.15)
Requirement already satisfied: wheel in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 38)) (0.33.6)
Requirement already satisfied: whichcraft in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 39)) (0.6.1)
Requirement already satisfied: capturer in /usr/local/lib/python3.7/site-packages (from -r /tmp/tmpbr7ajj94.txt (line 40)) (2.4)
Requirement already satisfied: contextlib2 in /usr/local/lib/python3.7/site-packages (from abduct->-r /tmp/tmpbr7ajj94.txt (line 1)) (0.6.0.post1)
Requirement already satisfied: six in /usr/local/lib/python3.7/site-packages/six-1.12.0-py3.7.egg (from attrdict->-r /tmp/tmpbr7ajj94.txt (line 2)) (1.12.0)
Requirement already satisfied: docopt>=0.6.1 in /usr/local/lib/python3.7/site-packages (from coveralls->-r /tmp/tmpbr7ajj94.txt (line 7)) (0.6.2)
Requirement already satisfied: gitdb2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitpython->-r /tmp/tmpbr7ajj94.txt (line 9)) (2.0.6)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python3.7/site-packages (from jinja2->-r /tmp/tmpbr7ajj94.txt (line 11)) (1.1.1)
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.7/site-packages (from networkx->-r /tmp/tmpbr7ajj94.txt (line 14)) (4.4.1)
Requirement already satisfied: packaging in /usr/local/lib/python3.7/site-packages (from pip_check_reqs>=2.0.3->-r /tmp/tmpbr7ajj94.txt (line 17)) (20.0)
Requirement already satisfied: glob2 in /usr/local/lib/python3.7/site-packages (from pkg_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 18)) (0.7)
Requirement already satisfied: requirements-parser>=0.2.0 in /usr/local/lib/python3.7/site-packages (from pkg_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 18)) (0.2.0)
Requirement already satisfied: configparser in /usr/local/lib/python3.7/site-packages (from pkg_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 18)) (4.0.2)
Requirement already satisfied: pyjwt in /usr/local/lib/python3.7/site-packages (from pygithub->-r /tmp/tmpbr7ajj94.txt (line 19)) (1.7.1)
Requirement already satisfied: deprecated in /usr/local/lib/python3.7/site-packages (from pygithub->-r /tmp/tmpbr7ajj94.txt (line 19)) (1.2.7)
Requirement already satisfied: isort<5,>=4.2.5 in /usr/local/lib/python3.7/site-packages (from pylint>=2.1.1->-r /tmp/tmpbr7ajj94.txt (line 20)) (4.3.21)
Requirement already satisfied: mccabe<0.7,>=0.6 in /usr/local/lib/python3.7/site-packages (from pylint>=2.1.1->-r /tmp/tmpbr7ajj94.txt (line 20)) (0.6.1)
Requirement already satisfied: astroid<2.4,>=2.3.0 in /usr/local/lib/python3.7/site-packages (from pylint>=2.1.1->-r /tmp/tmpbr7ajj94.txt (line 20)) (2.3.3)
Requirement already satisfied: py>=1.5.0 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpbr7ajj94.txt (line 22)) (1.8.1)
Requirement already satisfied: more-itertools>=4.0.0 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpbr7ajj94.txt (line 22)) (8.0.2)
Requirement already satisfied: attrs>=17.4.0 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpbr7ajj94.txt (line 22)) (19.3.0)
Requirement already satisfied: wcwidth in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpbr7ajj94.txt (line 22)) (0.1.8)
Requirement already satisfied: importlib-metadata>=0.12; python_version < "3.8" in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpbr7ajj94.txt (line 22)) (1.3.0)
Requirement already satisfied: pluggy<1.0,>=0.12 in /usr/local/lib/python3.7/site-packages (from pytest->-r /tmp/tmpbr7ajj94.txt (line 22)) (0.13.1)
Requirement already satisfied: ruamel.yaml>=0.15.78 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (0.16.5)
Requirement already satisfied: flask-cors in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (3.0.8)
Requirement already satisfied: flask in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.1.1)
Requirement already satisfied: boto3>=1.8.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.10.47)
Requirement already satisfied: flask-json in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (0.3.4)
Requirement already satisfied: appdirs>=1.4.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.4.3)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.24.2)
Requirement already satisfied: jsonlines==1.2.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.2.0)
Requirement already satisfied: aws-requests-auth>=0.4.2 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (0.4.2)
Requirement already satisfied: requests-futures==1.0.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.0.0)
Requirement already satisfied: tqdm>=4.26.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (4.41.1)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.7/site-packages/chardet-3.0.4-py3.7.egg (from requests->-r /tmp/tmpbr7ajj94.txt (line 26)) (3.0.4)
Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.7/site-packages/idna-2.8-py3.7.egg (from requests->-r /tmp/tmpbr7ajj94.txt (line 26)) (2.8)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.7/site-packages/certifi-2019.9.11-py3.7.egg (from requests->-r /tmp/tmpbr7ajj94.txt (line 26)) (2019.9.11)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (0.7.12)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (2.0.0)
Requirement already satisfied: sphinxcontrib-htmlhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (1.0.2)
Requirement already satisfied: sphinxcontrib-qthelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (1.0.2)
Requirement already satisfied: sphinxcontrib-jsmath in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (1.0.1)
Requirement already satisfied: Pygments>=2.0 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (2.5.2)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (2.8.0)
Requirement already satisfied: docutils>=0.12 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (0.15.2)
Requirement already satisfied: sphinxcontrib-serializinghtml in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (1.1.3)
Requirement already satisfied: sphinxcontrib-devhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (1.0.1)
Requirement already satisfied: sphinxcontrib-applehelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (1.0.1)
Requirement already satisfied: imagesize in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (1.2.0)
Requirement already satisfied: oset>=0.1.3 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpbr7ajj94.txt (line 32)) (0.1.3)
Requirement already satisfied: pybtex>=0.20 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpbr7ajj94.txt (line 32)) (0.22.2)
Requirement already satisfied: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->-r /tmp/tmpbr7ajj94.txt (line 32)) (0.2.2)
Requirement already satisfied: PyEnchant>=1.6.5 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_spelling->-r /tmp/tmpbr7ajj94.txt (line 34)) (2.0.0)
Requirement already satisfied: pkginfo>=1.4.2 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (1.5.0.1)
Requirement already satisfied: requests-toolbelt!=0.9.0,>=0.8.0 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (0.9.1)
Requirement already satisfied: keyring>=15.1 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (21.0.0)
Requirement already satisfied: readme-renderer>=21.0 in /usr/local/lib/python3.7/site-packages (from twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (24.0)
Requirement already satisfied: mendeleev in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.5.1)
Requirement already satisfied: humanfriendly in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (4.18)
Requirement already satisfied: numpy in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.18.1)
Requirement already satisfied: pronto>=1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.1.3)
Requirement already satisfied: openpyxl<=3.0.1,>=2.6.1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (3.0.1)
Requirement already satisfied: xlsxwriter in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.2.7)
Requirement already satisfied: pyexcel>=0.5.9.1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.5.15)
Requirement already satisfied: pint>=0.10 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.10)
Requirement already satisfied: diskcache in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (4.1.0)
Requirement already satisfied: pyexcel-io>=0.5.9.1 in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.5.20)
Requirement already satisfied: dataclasses in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.6)
Requirement already satisfied: objsize in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.3.2)
Requirement already satisfied: qualname in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.1.0)
Requirement already satisfied: openbabel; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (2.4.1)
Requirement already satisfied: scipy; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.4.1)
Requirement already satisfied: logging2; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.1.2)
Requirement already satisfied: matplotlib; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (3.1.2)
Requirement already satisfied: pyjnius; extra == "all" in /usr/local/lib/python3.7/site-packages (from wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.2.1)
Requirement already satisfied: smmap2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitdb2>=2.0.0->gitpython->-r /tmp/tmpbr7ajj94.txt (line 9)) (2.0.5)
Requirement already satisfied: pyparsing>=2.0.2 in /usr/local/lib/python3.7/site-packages (from packaging->pip_check_reqs>=2.0.3->-r /tmp/tmpbr7ajj94.txt (line 17)) (2.4.6)
Requirement already satisfied: wrapt<2,>=1.10 in /usr/local/lib/python3.7/site-packages (from deprecated->pygithub->-r /tmp/tmpbr7ajj94.txt (line 19)) (1.11.2)
Requirement already satisfied: typed-ast<1.5,>=1.4.0; implementation_name == "cpython" and python_version < "3.8" in /usr/local/lib/python3.7/site-packages (from astroid<2.4,>=2.3.0->pylint>=2.1.1->-r /tmp/tmpbr7ajj94.txt (line 20)) (1.4.0)
Requirement already satisfied: lazy-object-proxy==1.4.* in /usr/local/lib/python3.7/site-packages (from astroid<2.4,>=2.3.0->pylint>=2.1.1->-r /tmp/tmpbr7ajj94.txt (line 20)) (1.4.3)
Requirement already satisfied: zipp>=0.5 in /usr/local/lib/python3.7/site-packages (from importlib-metadata>=0.12; python_version < "3.8"->pytest->-r /tmp/tmpbr7ajj94.txt (line 22)) (0.6.0)
Requirement already satisfied: ruamel.yaml.clib>=0.1.2; platform_python_implementation == "CPython" and python_version < "3.8" in /usr/local/lib/python3.7/site-packages (from ruamel.yaml>=0.15.78->quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (0.2.0)
Requirement already satisfied: itsdangerous>=0.24 in /usr/local/lib/python3.7/site-packages (from flask->quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.1.0)
Requirement already satisfied: Werkzeug>=0.15 in /usr/local/lib/python3.7/site-packages (from flask->quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (0.16.0)
Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /usr/local/lib/python3.7/site-packages (from boto3>=1.8.0->quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (0.9.4)
Requirement already satisfied: s3transfer<0.3.0,>=0.2.0 in /usr/local/lib/python3.7/site-packages (from boto3>=1.8.0->quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (0.2.1)
Requirement already satisfied: botocore<1.14.0,>=1.13.47 in /usr/local/lib/python3.7/site-packages (from boto3>=1.8.0->quilt3>=3.1.3->-r /tmp/tmpbr7ajj94.txt (line 25)) (1.13.47)
Requirement already satisfied: pytz>=2015.7 in /usr/local/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.8->-r /tmp/tmpbr7ajj94.txt (line 28)) (2019.3)
Requirement already satisfied: latexcodec>=1.0.4 in /usr/local/lib/python3.7/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->-r /tmp/tmpbr7ajj94.txt (line 32)) (1.0.7)
Requirement already satisfied: secretstorage; sys_platform == "linux" in /usr/local/lib/python3.7/site-packages (from keyring>=15.1->twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (3.1.1)
Requirement already satisfied: bleach>=2.1.0 in /usr/local/lib/python3.7/site-packages (from readme-renderer>=21.0->twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (3.1.0)
Requirement already satisfied: pyfiglet in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.8.post1)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.3.12)
Requirement already satisfied: pandas in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.25.3)
Requirement already satisfied: colorama in /usr/local/lib/python3.7/site-packages (from mendeleev->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.4.3)
Requirement already satisfied: fastobo~=0.6.0 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.6.1)
Requirement already satisfied: frozendict~=1.2 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.2)
Requirement already satisfied: contexter~=0.1.4 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.1.4)
Requirement already satisfied: nanoset~=0.1.2; platform_python_implementation == "CPython" in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.1.3)
Requirement already satisfied: et-xmlfile in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.0.1)
Requirement already satisfied: jdcal in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.4.1)
Requirement already satisfied: texttable>=0.8.2 in /usr/local/lib/python3.7/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.6.2)
Requirement already satisfied: lml>=0.0.4 in /usr/local/lib/python3.7/site-packages (from pyexcel>=0.5.9.1->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.0.9)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.7/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.10.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.7/site-packages (from matplotlib; extra == "all"->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (1.1.0)
Requirement already satisfied: cython in /usr/local/lib/python3.7/site-packages (from pyjnius; extra == "all"->wc_utils[all]->-r /tmp/tmpbr7ajj94.txt (line 37)) (0.29.14)
Requirement already satisfied: cryptography in /usr/local/lib/python3.7/site-packages (from secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (2.8)
Requirement already satisfied: jeepney in /usr/local/lib/python3.7/site-packages (from secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (0.4.2)
Requirement already satisfied: webencodings in /usr/local/lib/python3.7/site-packages (from bleach>=2.1.0->readme-renderer>=21.0->twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (0.5.1)
Requirement already satisfied: cffi!=1.11.3,>=1.8 in /usr/local/lib/python3.7/site-packages (from cryptography->secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (1.13.2)
Requirement already satisfied: pycparser in /usr/local/lib/python3.7/site-packages (from cffi!=1.11.3,>=1.8->cryptography->secretstorage; sys_platform == "linux"->keyring>=15.1->twine->-r /tmp/tmpbr7ajj94.txt (line 36)) (2.19)
|
Standard error | WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_log_environment |
project/tests/test_core.py |
1967 |
Pass |
0.652 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_low_level_docker_commands |
project/tests/test_core.py |
718 |
Skipped |
0.002 |
Result type | pytest.skip |
Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Details | project/tests/test_core.py:718: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_and_archive_reports |
project/tests/test_core.py |
1596 |
Pass |
90.029 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
************* Module karr_lab_build_utils.core
karr_lab_build_utils/core.py:1119: warning (W0613, unused-argument, BuildHelper._get_test_cases) Unused argument 'with_xunit'
karr_lab_build_utils/core.py:1119: warning (W0613, unused-argument, BuildHelper._get_test_cases) Unused argument 'exit_on_failure'
karr_lab_build_utils/core.py:1155: warning (W0612, unused-variable, BuildHelper._get_test_cases) Unused variable 'files'
karr_lab_build_utils/core.py:1292: warning (W0612, unused-variable, BuildHelper.install_package_to_docker_container) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1678: warning (W0612, unused-variable, BuildHelper.get_test_results_status) Unused variable 'upstream_build_num'
karr_lab_build_utils/core.py:35: warning (W0611, unused-import, ) Unused import json
karr_lab_build_utils/core.py:54: warning (W0611, unused-import, ) Unused import _pytest
************* Module karr_lab_build_utils.__main__
karr_lab_build_utils/__main__.py:191: warning (W0612, unused-variable, DownloadInstallPackageConfigFilesController._default) Unused variable 'args'
karr_lab_build_utils/__main__.py:10: warning (W0611, unused-import, ) Unused BuildHelperError imported from karr_lab_build_utils.core
karr_lab_build_utils/__main__.py:13: warning (W0611, unused-import, ) Unused import sys
************* Module karr_lab_build_utils.config.core
karr_lab_build_utils/config/core.py:9: warning (W0611, unused-import, ) Unused import configobj
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v2.3.1
Initializing Spelling Checker
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 8 source files that are out of date
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
generating indices... genindex py-modindexdone
writing additional pages... searchdone
copying static files... ... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 7 warnings.
The HTML pages are in docs/_build/html.
Running Sphinx v2.3.1
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
************* Module karr_lab_build_utils.core
karr_lab_build_utils/core.py:1119: warning (W0613, unused-argument, BuildHelper._get_test_cases) Unused argument 'with_xunit'
karr_lab_build_utils/core.py:1119: warning (W0613, unused-argument, BuildHelper._get_test_cases) Unused argument 'exit_on_failure'
karr_lab_build_utils/core.py:1155: warning (W0612, unused-variable, BuildHelper._get_test_cases) Unused variable 'files'
karr_lab_build_utils/core.py:1292: warning (W0612, unused-variable, BuildHelper.install_package_to_docker_container) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1678: warning (W0612, unused-variable, BuildHelper.get_test_results_status) Unused variable 'upstream_build_num'
karr_lab_build_utils/core.py:35: warning (W0611, unused-import, ) Unused import json
karr_lab_build_utils/core.py:54: warning (W0611, unused-import, ) Unused import _pytest
************* Module karr_lab_build_utils.__main__
karr_lab_build_utils/__main__.py:191: warning (W0612, unused-variable, DownloadInstallPackageConfigFilesController._default) Unused variable 'args'
karr_lab_build_utils/__main__.py:10: warning (W0611, unused-import, ) Unused BuildHelperError imported from karr_lab_build_utils.core
karr_lab_build_utils/__main__.py:13: warning (W0611, unused-import, ) Unused import sys
************* Module karr_lab_build_utils.config.core
karr_lab_build_utils/config/core.py:9: warning (W0611, unused-import, ) Unused import configobj
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v2.3.1
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
Running Sphinx v2.3.1
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_and_archive_repor... |
project/tests/test_core.py |
1625 |
Pass |
37.836 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
************* Module karr_lab_build_utils.core
karr_lab_build_utils/core.py:1119: warning (W0613, unused-argument, BuildHelper._get_test_cases) Unused argument 'with_xunit'
karr_lab_build_utils/core.py:1119: warning (W0613, unused-argument, BuildHelper._get_test_cases) Unused argument 'exit_on_failure'
karr_lab_build_utils/core.py:1155: warning (W0612, unused-variable, BuildHelper._get_test_cases) Unused variable 'files'
karr_lab_build_utils/core.py:1292: warning (W0612, unused-variable, BuildHelper.install_package_to_docker_container) Unused variable 'rel_filenames'
karr_lab_build_utils/core.py:1678: warning (W0612, unused-variable, BuildHelper.get_test_results_status) Unused variable 'upstream_build_num'
karr_lab_build_utils/core.py:35: warning (W0611, unused-import, ) Unused import json
karr_lab_build_utils/core.py:54: warning (W0611, unused-import, ) Unused import _pytest
************* Module karr_lab_build_utils.__main__
karr_lab_build_utils/__main__.py:191: warning (W0612, unused-variable, DownloadInstallPackageConfigFilesController._default) Unused variable 'args'
karr_lab_build_utils/__main__.py:10: warning (W0611, unused-import, ) Unused BuildHelperError imported from karr_lab_build_utils.core
karr_lab_build_utils/__main__.py:13: warning (W0611, unused-import, ) Unused import sys
************* Module karr_lab_build_utils.config.core
karr_lab_build_utils/config/core.py:9: warning (W0611, unused-import, ) Unused import configobj
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v2.3.1
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
Running Sphinx v2.3.1
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_documentation |
project/tests/test_core.py |
1878 |
Pass |
42.362 |
Result type | |
Message | |
Details | |
Standard output | Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v2.3.1
Initializing Spelling Checker
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 8 source files that are out of date
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
generating indices... genindex py-modindexdone
writing additional pages... searchdone
copying static files... ... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 7 warnings.
The HTML pages are in docs/_build/html.
Running Sphinx v2.3.1
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
Running Sphinx v2.3.1
Initializing Spelling Checker
making output directory... done
Ignoring wiki words
Ignoring acronyms
Ignoring Python builtins
Ignoring importable module names
Looking for custom word list in /root/project/docs/spelling_wordlist.txt
building [mo]: targets for 0 po files that are out of date
building [spelling]: all documents
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
index.rst:4:Karr:
index.rst:16:Pylint:
writing output... [ 37%] installation
installation.rst:5:Pre:
installation.rst:46:Karr:
writing output... [ 50%] source/karr_lab_build_utils
source/karr_lab_build_utils.rst:5:Subpackages:
source/karr_lab_build_utils.rst:12:Submodules:
source/karr_lab_build_utils.rst:15:karr:
source/karr_lab_build_utils.rst:15:utils:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:3:Karr:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:1:Pylint:
source/karr_lab_build_utils.rst:1:acyclic:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:1:webhook:
source/karr_lab_build_utils.rst:5:karrlab:
source/karr_lab_build_utils.rst:23:karr:
source/karr_lab_build_utils.rst:23:utils:
source/karr_lab_build_utils.rst:31:karr:
source/karr_lab_build_utils.rst:31:utils:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:3:Karr:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:8:pytest:
source/karr_lab_build_utils.rst:32:sha:
source/karr_lab_build_utils.rst:74:apidoc:
source/karr_lab_build_utils.rst:146:hostname:
source/karr_lab_build_utils.rst:248:pytest:
source/karr_lab_build_utils.rst:284:apidoc:
source/karr_lab_build_utils.rst:1:Pylint:
source/karr_lab_build_utils.rst:6:Reimported:
source/karr_lab_build_utils.rst:7:init:
source/karr_lab_build_utils.rst:7:py:
source/karr_lab_build_utils.rst:Pylint:
source/karr_lab_build_utils.rst:Pylist:
source/karr_lab_build_utils.rst:rcfile:
source/karr_lab_build_utils.rst:Pylint:
source/karr_lab_build_utils.rst:1:acyclic:
source/karr_lab_build_utils.rst:acyclic:
source/karr_lab_build_utils.rst:1:webhook:
source/karr_lab_build_utils.rst:webhook:
source/karr_lab_build_utils.rst:9:karrlab:
source/karr_lab_build_utils.rst:14:karrlab:
source/karr_lab_build_utils.rst:str:
source/karr_lab_build_utils.rst:5:Karr:
source/karr_lab_build_utils.rst:16:untriggered:
source/karr_lab_build_utils.rst:occurences:
source/karr_lab_build_utils.rst:Karr:
source/karr_lab_build_utils.rst:1:configs:
source/karr_lab_build_utils.rst:1:configs:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:6:coveragerc:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:circleci:
source/karr_lab_build_utils.rst:stdout:
source/karr_lab_build_utils.rst:1:htaccess:
source/karr_lab_build_utils.rst:str:
source/karr_lab_build_utils.rst:Karr:
source/karr_lab_build_utils.rst:9:untriggered:
source/karr_lab_build_utils.rst:1:Karr:
source/karr_lab_build_utils.rst:Karr:
writing output... [ 62%] source/karr_lab_build_utils.config
source/karr_lab_build_utils.config.rst:2:karr:
source/karr_lab_build_utils.config.rst:2:utils:
source/karr_lab_build_utils.config.rst:2:config:
source/karr_lab_build_utils.config.rst:5:Submodules:
source/karr_lab_build_utils.config.rst:8:karr:
source/karr_lab_build_utils.config.rst:8:utils:
source/karr_lab_build_utils.config.rst:8:config:
source/karr_lab_build_utils.config.rst:3:Karr:
source/karr_lab_build_utils.config.rst:5:Karr:
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
tutorial_admins.rst:40:Pylint:
tutorial_admins.rst:43:Pylint:
tutorial_admins.rst:143:pypirc:
writing output... [100%] tutorial_developers
tutorial_developers.rst:110:subdirectory:
tutorial_developers.rst:110:subdirectory:
Spelling checker messages written to /root/project/docs/_build/spelling/output.txt
build succeeded, 8 warnings.
Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
Running Sphinx v2.3.1
Initializing Spelling Checker
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 0 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
no targets are out of date.
build succeeded.
The HTML pages are in docs/_build/html.
Running Sphinx v2.3.1
loading translations [en]... done
Initializing Spelling Checker
building [mo]: all of 0 po files
building [text]: all source files
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] about
reading sources... [ 25%] index
reading sources... [ 37%] installation
reading sources... [ 50%] source/karr_lab_build_utils
reading sources... [ 62%] source/karr_lab_build_utils.config
reading sources... [ 75%] source/modules
reading sources... [ 87%] tutorial_admins
reading sources... [100%] tutorial_developers
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] about
writing output... [ 25%] index
writing output... [ 37%] installation
writing output... [ 50%] source/karr_lab_build_utils
writing output... [ 62%] source/karr_lab_build_utils.config
writing output... [ 75%] source/modules
writing output... [ 87%] tutorial_admins
writing output... [100%] tutorial_developers
build succeeded, 7 warnings.
The text files are in _build_txt.
|
Standard error | /root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
/root/project/docs/about.rst:2: WARNING: Duplicate explicit target name: "karr lab".
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:18: WARNING: Unexpected indentation.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.do_post_test_tasks:19: WARNING: Block quote ends without a blank line; unexpected unindent.
/root/project/karr_lab_build_utils/core.py:docstring of karr_lab_build_utils.core.BuildHelper.trigger_tests_of_downstream_dependencies:11: WARNING: Unexpected indentation.
/root/project/docs/source/karr_lab_build_utils.config.rst:5: WARNING: duplicate label submodules, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/source/karr_lab_build_utils.config.rst:17: WARNING: duplicate label module contents, other instance in /root/project/docs/source/karr_lab_build_utils.rst
/root/project/docs/tutorial_admins.rst:45: WARNING: Unknown target name: "pylint https://www.pylint.org/".
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_make_documentation_error |
project/tests/test_core.py |
1896 |
Pass |
0.614 |
Result type | |
Message | |
Details | |
Standard output | Creating file docs/source/karr_lab_build_utils.rst.
Creating file docs/source/karr_lab_build_utils.config.rst.
Creating file docs/source/modules.rst.
|
Standard error |
Exception occurred:
File "/usr/local/lib/python3.7/site-packages/mock/mock.py", line 1143, in _mock_call
raise effect
Exception: Test exception
The full traceback has been saved in /tmp/sphinx-err-noqwbujq.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_no_build_num |
project/tests/test_core.py |
2707 |
Pass |
0.312 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_raw_cli |
project/tests/test_core.py |
2688 |
Pass |
0.168 |
Result type | |
Message | |
Details | |
Standard output | usage: karr_lab_build_utils [-h] [-d] [-q] [-v]
{upload-package-to-pypi,find-unused-requirements,find-missing-requirements,analyze-package,visualize-package-dependencies,are-package-dependencies-acyclic,compile-downstream-dependencies,make-documentation,upload-coverage-report-to-code-climate,upload-coverage-report-to-coveralls,archive-coverage-report,combine-coverage-reports,make-and-archive-reports,do-post-test-tasks,create-code-climate-github-webhook,delete-circleci-environment-variable,set-circleci-environment-variable,get-circleci-environment-variables,follow-circleci-build,docker,run-tests,download-install-package-config-files,create-documentation-template,setup-repository,create-repository,create-package,archive-test-report,install-requirements,upgrade-karr-lab-packages}
...
Karr Lab build utilities
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{upload-package-to-pypi,find-unused-requirements,find-missing-requirements,analyze-package,visualize-package-dependencies,are-package-dependencies-acyclic,compile-downstream-dependencies,make-documentation,upload-coverage-report-to-code-climate,upload-coverage-report-to-coveralls,archive-coverage-report,combine-coverage-reports,make-and-archive-reports,do-post-test-tasks,create-code-climate-github-webhook,delete-circleci-environment-variable,set-circleci-environment-variable,get-circleci-environment-variables,follow-circleci-build,docker,run-tests,download-install-package-config-files,create-documentation-template,setup-repository,create-repository,create-package,archive-test-report,install-requirements,upgrade-karr-lab-packages}
upload-package-to-pypi
Upload package to PyPI
find-unused-requirements
Finding unused requirements for a package.
find-missing-requirements
Finding missing requirements for a package.
analyze-package Perform static analyses of a package using Pylint
visualize-package-dependencies
Visualize downstream package dependencies as a graph
are-package-dependencies-acyclic
Check if the package dependencies are acyclic so they
are supported by CircleCI
compile-downstream-dependencies
Compile the downstream dependencies of a package by
analyzing the requirements files of other packages
make-documentation Make HTML documentation. Optionally, spell check
documentation.
upload-coverage-report-to-code-climate
Upload coverage report to Code Climate
upload-coverage-report-to-coveralls
Upload coverage report to Coveralls
archive-coverage-report
Archive coverage report
combine-coverage-reports
Combine coverage reports (.coverage.*) into a single
file (.coverage)
make-and-archive-reports
Make and archive reports
do-post-test-tasks Do all post-test tasks for CircleCI
create-code-climate-github-webhook
Create Code Climate GitHub webhook for the current
repository
delete-circleci-environment-variable
Delete a CircleCI environment variable for a
repository
set-circleci-environment-variable
Set a CircleCI environment variable for a repository
get-circleci-environment-variables
Get the CircleCI environment variables for a
repository and their partial values
follow-circleci-build
Follow a CircleCI build for a repository
docker Docker utilities
run-tests Run unit tests located at `test_path`
download-install-package-config-files
Download and install configuration files from GitHub
configuration repository
create-documentation-template
Create a Sphinx documentation template for a package
setup-repository Setup a local Git repository with the default
directory structure
create-repository Create a GitHub repository and clone the repository
locally
create-package - Create local and remote Git repositories; - Setup
the directory structure of the repository; - Add the
repository to CircleCI, Coveralls, Code Climate, Read
the Docs, and code.karrlab.org; - Update the
downstream dependencies of the packages dependencies
archive-test-report
Archive test report
install-requirements
Install requirements
upgrade-karr-lab-packages
Upgrade the packages from the Karr Lab's GitHub
organization
|
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_method_and_capture... |
project/tests/test_core.py |
2717 |
Pass |
0.344 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests |
project/tests/test_core.py |
567 |
Pass |
2.472 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
---------- generated xml file: /tmp/tmpwrpmucwx/latest.0-1.3.7.6.xml -----------
========================= 1 passed, 1 warning in 0.02s =========================
============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
---------- generated xml file: /tmp/tmpwrpmucwx/latest.0-1.3.7.6.xml -----------
========================= 1 passed, 1 warning in 0.01s =========================
============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
Coverage.py warning: No data was collected. (no-data-collected)
Coverage.py warning: No data was collected. (no-data-collected)
.
----------------------------------------------------------------------
Ran 1 test in 0.002s
OK
Coverage.py warning: No data was collected. (no-data-collected)
Coverage.py warning: No data was collected. (no-data-collected)
|
|
|
project.tests.test_core.TestCircleCi |
test_run_tests_circleci |
project/tests/test_core.py |
2773 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
Details | project/tests/test_core.py:2773: Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestCircleCi |
test_run_tests_circleci_wit... |
project/tests/test_core.py |
2785 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
Details | project/tests/test_core.py:2785: Test requires the CircleCI command line utility (local executor) and this isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html`. |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_default_path |
project/tests/test_core.py |
633 |
Pass |
0.338 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_docker |
project/tests/test_core.py |
740 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Details | project/tests/test_core.py:740: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_error |
project/tests/test_core.py |
655 |
Pass |
0.323 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_multiple_wor... |
project/tests/test_core.py |
629 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | Todo |
Details | project/tests/test_core.py:629: Todo |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_unsupported_env |
project/tests/test_core.py |
786 |
Pass |
0.312 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_with_test_pa... |
project/tests/test_core.py |
639 |
Pass |
0.588 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
============================== 1 passed in 0.02s ===============================
|
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_run_tests_with_verbose |
project/tests/test_core.py |
646 |
Pass |
0.587 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py .
============================== 1 passed in 0.02s ===============================
|
Standard error | .
----------------------------------------------------------------------
Ran 1 test in 0.001s
OK
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1575 |
Pass |
0.294 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1246 |
Pass |
0.631 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
991 |
Pass |
0.338 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1504 |
Pass |
0.723 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
914 |
Pass |
0.634 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1158 |
Pass |
0.611 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1080 |
Pass |
0.339 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1398 |
Pass |
0.634 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_send_email_notificatio... |
project/tests/test_core.py |
1338 |
Pass |
0.799 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_setup_repository |
project/tests/test_core.py |
309 |
Pass |
1.080 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_set_circleci_environme... |
project/tests/test_core.py |
423 |
Pass |
1.942 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2397 |
Pass |
1.127 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2471 |
Pass |
0.356 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2185 |
Pass |
0.612 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2203 |
Pass |
0.651 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2330 |
Pass |
0.634 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2155 |
Pass |
0.603 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_trigger_tests_of_downs... |
project/tests/test_core.py |
2254 |
Pass |
0.638 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_unsupported_test_runner |
project/tests/test_core.py |
2700 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upgrade_karr_lab_packages |
project/tests/test_core.py |
532 |
Pass |
17.746 |
Result type | |
Message | |
Details | |
Standard output | Collecting pkg-utils[all]
Cloning https://github.com/KarrLab/pkg_utils.git to /tmp/pip-install-q9g0zg__/pkg-utils
Collecting wc-utils[all]
Cloning https://github.com/KarrLab/wc_utils.git to /tmp/pip-install-q9g0zg__/wc-utils
Requirement already satisfied, skipping upgrade: configparser in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (4.0.2)
Requirement already satisfied, skipping upgrade: glob2 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.7)
Requirement already satisfied, skipping upgrade: pip>=19.3 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (19.3.1)
Requirement already satisfied, skipping upgrade: requirements_parser>=0.2.0 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.2.0)
Requirement already satisfied, skipping upgrade: pypandoc in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (1.4)
Requirement already satisfied, skipping upgrade: sphinx>=1.8 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (2.3.1)
Requirement already satisfied, skipping upgrade: sphinx_fontawesome in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.0.6)
Requirement already satisfied, skipping upgrade: sphinx_rtd_theme>=0.4.2 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.4.3)
Requirement already satisfied, skipping upgrade: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_bibtex in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (1.0.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_spelling in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (4.3.0)
Requirement already satisfied, skipping upgrade: sphinxprettysearchresults in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.3.5)
Requirement already satisfied, skipping upgrade: abduct in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: attrdict in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: configobj in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (5.0.6)
Requirement already satisfied, skipping upgrade: dataclasses in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.6)
Requirement already satisfied, skipping upgrade: diskcache in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (4.1.0)
Requirement already satisfied, skipping upgrade: humanfriendly in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (4.18)
Requirement already satisfied, skipping upgrade: mendeleev in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.5.1)
Requirement already satisfied, skipping upgrade: numpy in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.18.1)
Requirement already satisfied, skipping upgrade: objsize in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.3.2)
Requirement already satisfied, skipping upgrade: openpyxl<=3.0.1,>=2.6.1 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.0.1)
Requirement already satisfied, skipping upgrade: pint>=0.10 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.10)
Requirement already satisfied, skipping upgrade: pronto>=1 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.1.3)
Requirement already satisfied, skipping upgrade: pyexcel>=0.5.9.1 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.5.15)
Requirement already satisfied, skipping upgrade: pyexcel_io>=0.5.9.1 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.5.20)
Requirement already satisfied, skipping upgrade: pyyaml>=5.1 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (5.3)
Requirement already satisfied, skipping upgrade: qualname in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.1.0)
Requirement already satisfied, skipping upgrade: requests in /usr/local/lib/python3.7/site-packages/requests-2.22.0-py3.7.egg (from wc-utils[all]) (2.22.0)
Requirement already satisfied, skipping upgrade: setuptools in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (44.0.0)
Requirement already satisfied, skipping upgrade: xlsxwriter in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.2.7)
Requirement already satisfied, skipping upgrade: boto3 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.10.47)
Requirement already satisfied, skipping upgrade: capturer in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: gitpython in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.0.5)
Requirement already satisfied, skipping upgrade: logging2 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.1.2)
Requirement already satisfied, skipping upgrade: matplotlib in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.1.2)
Requirement already satisfied, skipping upgrade: mock in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.0.5)
Requirement already satisfied, skipping upgrade: openbabel in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.4.1)
Requirement already satisfied, skipping upgrade: pygithub in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.45)
Requirement already satisfied, skipping upgrade: pyjnius in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: quilt3>=3.1.5 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.1.8)
Requirement already satisfied, skipping upgrade: scipy in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.4.1)
Requirement already satisfied, skipping upgrade: wheel>=0.25.0 in /usr/local/lib/python3.7/site-packages (from pypandoc->pkg-utils[all]) (0.33.6)
Requirement already satisfied, skipping upgrade: packaging in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (20.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-serializinghtml in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.3)
Requirement already satisfied, skipping upgrade: imagesize in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.10.3)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-qthelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.2)
Requirement already satisfied, skipping upgrade: docutils>=0.12 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.15.2)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.8.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-devhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.5.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib-jsmath in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib-htmlhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib-applehelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.7.12)
Requirement already satisfied, skipping upgrade: oset>=0.1.3 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: pybtex>=0.20 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.22.2)
Requirement already satisfied, skipping upgrade: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.2.2)
Requirement already satisfied, skipping upgrade: six in /usr/local/lib/python3.7/site-packages/six-1.12.0-py3.7.egg (from sphinxcontrib_spelling->pkg-utils[all]) (1.12.0)
Requirement already satisfied, skipping upgrade: PyEnchant>=1.6.5 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_spelling->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: contextlib2 in /usr/local/lib/python3.7/site-packages (from abduct->wc-utils[all]) (0.6.0.post1)
Requirement already satisfied, skipping upgrade: pyfiglet in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (0.8.post1)
Requirement already satisfied, skipping upgrade: pandas in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (0.25.3)
Requirement already satisfied, skipping upgrade: sqlalchemy in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (1.3.12)
Requirement already satisfied, skipping upgrade: colorama in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (0.4.3)
Requirement already satisfied, skipping upgrade: et-xmlfile in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: jdcal in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc-utils[all]) (1.4.1)
Requirement already satisfied, skipping upgrade: frozendict~=1.2 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (1.2)
Requirement already satisfied, skipping upgrade: fastobo~=0.6.0 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (0.6.1)
Requirement already satisfied, skipping upgrade: networkx~=2.3 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: chardet~=3.0 in /usr/local/lib/python3.7/site-packages/chardet-3.0.4-py3.7.egg (from pronto>=1->wc-utils[all]) (3.0.4)
Requirement already satisfied, skipping upgrade: nanoset~=0.1.2; platform_python_implementation == "CPython" in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: python-dateutil~=2.8 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (2.8.0)
Requirement already satisfied, skipping upgrade: contexter~=0.1.4 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (0.1.4)
Requirement already satisfied, skipping upgrade: texttable>=0.8.2 in /usr/local/lib/python3.7/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (1.6.2)
Requirement already satisfied, skipping upgrade: lml>=0.0.4 in /usr/local/lib/python3.7/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (0.0.9)
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /usr/local/lib/python3.7/site-packages/idna-2.8-py3.7.egg (from requests->wc-utils[all]) (2.8)
Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /usr/local/lib/python3.7/site-packages (from requests->wc-utils[all]) (1.24.2)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /usr/local/lib/python3.7/site-packages/certifi-2019.9.11-py3.7.egg (from requests->wc-utils[all]) (2019.9.11)
Requirement already satisfied, skipping upgrade: botocore<1.14.0,>=1.13.47 in /usr/local/lib/python3.7/site-packages (from boto3->wc-utils[all]) (1.13.47)
Requirement already satisfied, skipping upgrade: jmespath<1.0.0,>=0.7.1 in /usr/local/lib/python3.7/site-packages (from boto3->wc-utils[all]) (0.9.4)
Requirement already satisfied, skipping upgrade: s3transfer<0.3.0,>=0.2.0 in /usr/local/lib/python3.7/site-packages (from boto3->wc-utils[all]) (0.2.1)
Requirement already satisfied, skipping upgrade: gitdb2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitpython->wc-utils[all]) (2.0.6)
Requirement already satisfied, skipping upgrade: cycler>=0.10 in /usr/local/lib/python3.7/site-packages (from matplotlib->wc-utils[all]) (0.10.0)
Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /usr/local/lib/python3.7/site-packages (from matplotlib->wc-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.7/site-packages (from matplotlib->wc-utils[all]) (2.4.6)
Requirement already satisfied, skipping upgrade: pyjwt in /usr/local/lib/python3.7/site-packages (from pygithub->wc-utils[all]) (1.7.1)
Requirement already satisfied, skipping upgrade: deprecated in /usr/local/lib/python3.7/site-packages (from pygithub->wc-utils[all]) (1.2.7)
Requirement already satisfied, skipping upgrade: cython in /usr/local/lib/python3.7/site-packages (from pyjnius->wc-utils[all]) (0.29.14)
Requirement already satisfied, skipping upgrade: flask in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.1.1)
Requirement already satisfied, skipping upgrade: flask-cors in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (3.0.8)
Requirement already satisfied, skipping upgrade: tqdm>=4.26.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (4.41.1)
Requirement already satisfied, skipping upgrade: requests-futures==1.0.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.0.0)
Requirement already satisfied, skipping upgrade: jsonlines==1.2.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: aws-requests-auth>=0.4.2 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (0.4.2)
Requirement already satisfied, skipping upgrade: flask-json in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (0.3.4)
Requirement already satisfied, skipping upgrade: appdirs>=1.4.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.4.3)
Requirement already satisfied, skipping upgrade: ruamel.yaml>=0.15.78 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (0.16.5)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /usr/local/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx>=1.8->pkg-utils[all]) (1.1.1)
Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /usr/local/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.8->pkg-utils[all]) (2019.3)
Requirement already satisfied, skipping upgrade: latexcodec>=1.0.4 in /usr/local/lib/python3.7/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->pkg-utils[all]) (1.0.7)
Requirement already satisfied, skipping upgrade: decorator>=4.3.0 in /usr/local/lib/python3.7/site-packages (from networkx~=2.3->pronto>=1->wc-utils[all]) (4.4.1)
Requirement already satisfied, skipping upgrade: smmap2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitdb2>=2.0.0->gitpython->wc-utils[all]) (2.0.5)
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Building wheels for collected packages: pkg-utils, wc-utils
Building wheel for pkg-utils (setup.py): started
Building wheel for pkg-utils (setup.py): finished with status 'done'
Created wheel for pkg-utils: filename=pkg_utils-0.0.5-py2.py3-none-any.whl size=7558 sha256=87a59903b74b0eb1ac6f5f373df6b1ab7bfb2fc713b063808b84f5299df36e46
Stored in directory: /tmp/pip-ephem-wheel-cache-6wmmet79/wheels/57/3a/20/6f82ae6d2e86c270594fde48c8eb5bd0f1c901e3afc411cd4f
Building wheel for wc-utils (setup.py): started
Building wheel for wc-utils (setup.py): finished with status 'done'
Created wheel for wc-utils: filename=wc_utils-0.0.15-py2.py3-none-any.whl size=68255 sha256=c15183d1d8c0343388c6ea15bb74f7a99c66d97fe21518e5043b8ea928f967fe
Stored in directory: /tmp/pip-ephem-wheel-cache-6wmmet79/wheels/33/7d/4c/660999fd6582d65839f94335bf2e65501591e27798b0871c35
Successfully built pkg-utils wc-utils
Installing collected packages: pkg-utils, wc-utils
Found existing installation: pkg-utils 0.0.5
Uninstalling pkg-utils-0.0.5:
Successfully uninstalled pkg-utils-0.0.5
Found existing installation: wc-utils 0.0.15
Uninstalling wc-utils-0.0.15:
Successfully uninstalled wc-utils-0.0.15
Successfully installed pkg-utils-0.0.5 wc-utils-0.0.15
Collecting pkg-utils[all]
Cloning https://github.com/KarrLab/pkg_utils.git to /tmp/pip-install-om_8tp9e/pkg-utils
Collecting wc-utils[all]
Cloning https://github.com/KarrLab/wc_utils.git to /tmp/pip-install-om_8tp9e/wc-utils
Requirement already satisfied, skipping upgrade: configparser in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (4.0.2)
Requirement already satisfied, skipping upgrade: glob2 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.7)
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Requirement already satisfied, skipping upgrade: sphinx>=1.8 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (2.3.1)
Requirement already satisfied, skipping upgrade: sphinx_fontawesome in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.0.6)
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Requirement already satisfied, skipping upgrade: sphinxcontrib_addmetahtml>=0.1.1 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_bibtex in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (1.0.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib_googleanalytics>=0.1.1 in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.1.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib_spelling in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (4.3.0)
Requirement already satisfied, skipping upgrade: sphinxprettysearchresults in /usr/local/lib/python3.7/site-packages (from pkg-utils[all]) (0.3.5)
Requirement already satisfied, skipping upgrade: abduct in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: attrdict in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.0.1)
Requirement already satisfied, skipping upgrade: configobj in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (5.0.6)
Requirement already satisfied, skipping upgrade: dataclasses in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.6)
Requirement already satisfied, skipping upgrade: diskcache in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (4.1.0)
Requirement already satisfied, skipping upgrade: humanfriendly in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (4.18)
Requirement already satisfied, skipping upgrade: mendeleev in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.5.1)
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Requirement already satisfied, skipping upgrade: objsize in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.3.2)
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Requirement already satisfied, skipping upgrade: pint>=0.10 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.10)
Requirement already satisfied, skipping upgrade: pronto>=1 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.1.3)
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Requirement already satisfied, skipping upgrade: pyexcel_io>=0.5.9.1 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.5.20)
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Requirement already satisfied, skipping upgrade: requests in /usr/local/lib/python3.7/site-packages/requests-2.22.0-py3.7.egg (from wc-utils[all]) (2.22.0)
Requirement already satisfied, skipping upgrade: setuptools in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (44.0.0)
Requirement already satisfied, skipping upgrade: xlsxwriter in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.2.7)
Requirement already satisfied, skipping upgrade: boto3 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.10.47)
Requirement already satisfied, skipping upgrade: capturer in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: gitpython in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.0.5)
Requirement already satisfied, skipping upgrade: logging2 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (0.1.2)
Requirement already satisfied, skipping upgrade: matplotlib in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.1.2)
Requirement already satisfied, skipping upgrade: mock in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.0.5)
Requirement already satisfied, skipping upgrade: openbabel in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (2.4.1)
Requirement already satisfied, skipping upgrade: pygithub in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.45)
Requirement already satisfied, skipping upgrade: pyjnius in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.2.1)
Requirement already satisfied, skipping upgrade: quilt3>=3.1.5 in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (3.1.8)
Requirement already satisfied, skipping upgrade: scipy in /usr/local/lib/python3.7/site-packages (from wc-utils[all]) (1.4.1)
Requirement already satisfied, skipping upgrade: wheel>=0.25.0 in /usr/local/lib/python3.7/site-packages (from pypandoc->pkg-utils[all]) (0.33.6)
Requirement already satisfied, skipping upgrade: sphinxcontrib-applehelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: packaging in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (20.0)
Requirement already satisfied, skipping upgrade: imagesize in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-devhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.10.3)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.8.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-htmlhelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib-serializinghtml in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.1.3)
Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.5.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib-qthelp in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.2)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.7.12)
Requirement already satisfied, skipping upgrade: sphinxcontrib-jsmath in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: docutils>=0.12 in /usr/local/lib/python3.7/site-packages (from sphinx>=1.8->pkg-utils[all]) (0.15.2)
Requirement already satisfied, skipping upgrade: pybtex>=0.20 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.22.2)
Requirement already satisfied, skipping upgrade: pybtex-docutils>=0.2.0 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.2.2)
Requirement already satisfied, skipping upgrade: oset>=0.1.3 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_bibtex->pkg-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: PyEnchant>=1.6.5 in /usr/local/lib/python3.7/site-packages (from sphinxcontrib_spelling->pkg-utils[all]) (2.0.0)
Requirement already satisfied, skipping upgrade: six in /usr/local/lib/python3.7/site-packages/six-1.12.0-py3.7.egg (from sphinxcontrib_spelling->pkg-utils[all]) (1.12.0)
Requirement already satisfied, skipping upgrade: contextlib2 in /usr/local/lib/python3.7/site-packages (from abduct->wc-utils[all]) (0.6.0.post1)
Requirement already satisfied, skipping upgrade: colorama in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (0.4.3)
Requirement already satisfied, skipping upgrade: pyfiglet in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (0.8.post1)
Requirement already satisfied, skipping upgrade: pandas in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (0.25.3)
Requirement already satisfied, skipping upgrade: sqlalchemy in /usr/local/lib/python3.7/site-packages (from mendeleev->wc-utils[all]) (1.3.12)
Requirement already satisfied, skipping upgrade: et-xmlfile in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc-utils[all]) (1.0.1)
Requirement already satisfied, skipping upgrade: jdcal in /usr/local/lib/python3.7/site-packages (from openpyxl<=3.0.1,>=2.6.1->wc-utils[all]) (1.4.1)
Requirement already satisfied, skipping upgrade: nanoset~=0.1.2; platform_python_implementation == "CPython" in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (0.1.3)
Requirement already satisfied, skipping upgrade: fastobo~=0.6.0 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (0.6.1)
Requirement already satisfied, skipping upgrade: contexter~=0.1.4 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (0.1.4)
Requirement already satisfied, skipping upgrade: python-dateutil~=2.8 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (2.8.0)
Requirement already satisfied, skipping upgrade: frozendict~=1.2 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (1.2)
Requirement already satisfied, skipping upgrade: chardet~=3.0 in /usr/local/lib/python3.7/site-packages/chardet-3.0.4-py3.7.egg (from pronto>=1->wc-utils[all]) (3.0.4)
Requirement already satisfied, skipping upgrade: networkx~=2.3 in /usr/local/lib/python3.7/site-packages (from pronto>=1->wc-utils[all]) (2.4)
Requirement already satisfied, skipping upgrade: lml>=0.0.4 in /usr/local/lib/python3.7/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (0.0.9)
Requirement already satisfied, skipping upgrade: texttable>=0.8.2 in /usr/local/lib/python3.7/site-packages (from pyexcel>=0.5.9.1->wc-utils[all]) (1.6.2)
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /usr/local/lib/python3.7/site-packages/idna-2.8-py3.7.egg (from requests->wc-utils[all]) (2.8)
Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /usr/local/lib/python3.7/site-packages (from requests->wc-utils[all]) (1.24.2)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /usr/local/lib/python3.7/site-packages/certifi-2019.9.11-py3.7.egg (from requests->wc-utils[all]) (2019.9.11)
Requirement already satisfied, skipping upgrade: botocore<1.14.0,>=1.13.47 in /usr/local/lib/python3.7/site-packages (from boto3->wc-utils[all]) (1.13.47)
Requirement already satisfied, skipping upgrade: s3transfer<0.3.0,>=0.2.0 in /usr/local/lib/python3.7/site-packages (from boto3->wc-utils[all]) (0.2.1)
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Requirement already satisfied, skipping upgrade: gitdb2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitpython->wc-utils[all]) (2.0.6)
Requirement already satisfied, skipping upgrade: cycler>=0.10 in /usr/local/lib/python3.7/site-packages (from matplotlib->wc-utils[all]) (0.10.0)
Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /usr/local/lib/python3.7/site-packages (from matplotlib->wc-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /usr/local/lib/python3.7/site-packages (from matplotlib->wc-utils[all]) (2.4.6)
Requirement already satisfied, skipping upgrade: pyjwt in /usr/local/lib/python3.7/site-packages (from pygithub->wc-utils[all]) (1.7.1)
Requirement already satisfied, skipping upgrade: deprecated in /usr/local/lib/python3.7/site-packages (from pygithub->wc-utils[all]) (1.2.7)
Requirement already satisfied, skipping upgrade: cython in /usr/local/lib/python3.7/site-packages (from pyjnius->wc-utils[all]) (0.29.14)
Requirement already satisfied, skipping upgrade: aws-requests-auth>=0.4.2 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (0.4.2)
Requirement already satisfied, skipping upgrade: jsonlines==1.2.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.2.0)
Requirement already satisfied, skipping upgrade: flask-json in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (0.3.4)
Requirement already satisfied, skipping upgrade: ruamel.yaml>=0.15.78 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (0.16.5)
Requirement already satisfied, skipping upgrade: flask-cors in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (3.0.8)
Requirement already satisfied, skipping upgrade: flask in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.1.1)
Requirement already satisfied, skipping upgrade: tqdm>=4.26.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (4.41.1)
Requirement already satisfied, skipping upgrade: appdirs>=1.4.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.4.3)
Requirement already satisfied, skipping upgrade: requests-futures==1.0.0 in /usr/local/lib/python3.7/site-packages (from quilt3>=3.1.5->wc-utils[all]) (1.0.0)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /usr/local/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx>=1.8->pkg-utils[all]) (1.1.1)
Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /usr/local/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.8->pkg-utils[all]) (2019.3)
Requirement already satisfied, skipping upgrade: latexcodec>=1.0.4 in /usr/local/lib/python3.7/site-packages (from pybtex>=0.20->sphinxcontrib_bibtex->pkg-utils[all]) (1.0.7)
Requirement already satisfied, skipping upgrade: decorator>=4.3.0 in /usr/local/lib/python3.7/site-packages (from networkx~=2.3->pronto>=1->wc-utils[all]) (4.4.1)
Requirement already satisfied, skipping upgrade: smmap2>=2.0.0 in /usr/local/lib/python3.7/site-packages (from gitdb2>=2.0.0->gitpython->wc-utils[all]) (2.0.5)
Requirement already satisfied, skipping upgrade: wrapt<2,>=1.10 in /usr/local/lib/python3.7/site-packages (from deprecated->pygithub->wc-utils[all]) (1.11.2)
Requirement already satisfied, skipping upgrade: ruamel.yaml.clib>=0.1.2; platform_python_implementation == "CPython" and python_version < "3.8" in /usr/local/lib/python3.7/site-packages (from ruamel.yaml>=0.15.78->quilt3>=3.1.5->wc-utils[all]) (0.2.0)
Requirement already satisfied, skipping upgrade: click>=5.1 in /usr/local/lib/python3.7/site-packages (from flask->quilt3>=3.1.5->wc-utils[all]) (7.0)
Requirement already satisfied, skipping upgrade: itsdangerous>=0.24 in /usr/local/lib/python3.7/site-packages (from flask->quilt3>=3.1.5->wc-utils[all]) (1.1.0)
Requirement already satisfied, skipping upgrade: Werkzeug>=0.15 in /usr/local/lib/python3.7/site-packages (from flask->quilt3>=3.1.5->wc-utils[all]) (0.16.0)
Building wheels for collected packages: pkg-utils, wc-utils
Building wheel for pkg-utils (setup.py): started
Building wheel for pkg-utils (setup.py): finished with status 'done'
Created wheel for pkg-utils: filename=pkg_utils-0.0.5-py2.py3-none-any.whl size=7558 sha256=97dc265754be96216f1a4c447b16eac86691fd9967d0bcad5a9436559f063209
Stored in directory: /tmp/pip-ephem-wheel-cache-os40zscp/wheels/57/3a/20/6f82ae6d2e86c270594fde48c8eb5bd0f1c901e3afc411cd4f
Building wheel for wc-utils (setup.py): started
Building wheel for wc-utils (setup.py): finished with status 'done'
Created wheel for wc-utils: filename=wc_utils-0.0.15-py2.py3-none-any.whl size=68255 sha256=2fd64d5ad6a3237d474c7987be8fe06edd65cae50398a3a750061998bd535561
Stored in directory: /tmp/pip-ephem-wheel-cache-os40zscp/wheels/33/7d/4c/660999fd6582d65839f94335bf2e65501591e27798b0871c35
Successfully built pkg-utils wc-utils
Installing collected packages: pkg-utils, wc-utils
Found existing installation: pkg-utils 0.0.5
Uninstalling pkg-utils-0.0.5:
Successfully uninstalled pkg-utils-0.0.5
Found existing installation: wc-utils 0.0.15
Uninstalling wc-utils-0.0.15:
Successfully uninstalled wc-utils-0.0.15
Successfully installed pkg-utils-0.0.5 wc-utils-0.0.15
|
Standard error | Running command git clone -q https://github.com/KarrLab/pkg_utils.git /tmp/pip-install-q9g0zg__/pkg-utils
Running command git clone -q https://github.com/KarrLab/wc_utils.git /tmp/pip-install-q9g0zg__/wc-utils
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Running command git clone -q https://github.com/KarrLab/pkg_utils.git /tmp/pip-install-om_8tp9e/pkg-utils
Running command git clone -q https://github.com/KarrLab/wc_utils.git /tmp/pip-install-om_8tp9e/wc-utils
WARNING: You are using pip version 19.3.1; however, version 20.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upgrade_requirements_k... |
project/tests/test_core.py |
543 |
Pass |
0.316 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1792 |
Pass |
2.809 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1816 |
Pass |
0.304 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1761 |
Pass |
2.356 |
Result type | |
Message | |
Details | |
Standard output | ============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-5.3.2, py-1.8.1, pluggy-0.13.1
rootdir: /root, inifile: pytest.ini
collected 1 item
tests/test_core.py . [100%]
=============================== warnings summary ===============================
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436
/usr/local/lib/python3.7/site-packages/_pytest/junitxml.py:436: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0.
Add 'junit_family=legacy' to your pytest.ini file to silence this warning and make your suite compatible.
_issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
----- generated xml file: /root/project/tests/reports/latest.0-1.3.7.6.xml -----
========================= 1 passed, 1 warning in 0.02s =========================
|
Standard error | Coverage.py warning: No data was collected. (no-data-collected)
|
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_coverage_report... |
project/tests/test_core.py |
1784 |
Pass |
0.429 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_documentation_t... |
project/tests/test_core.py |
1909 |
Pass |
1.106 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_upload_package_to_pypi |
project/tests/test_core.py |
2581 |
Pass |
11.839 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test_visualize_package_depe... |
project/tests/test_core.py |
2108 |
Pass |
0.822 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__get_test_cases |
project/tests/test_core.py |
678 |
Pass |
0.368 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__run_docker_command_ca... |
project/tests/test_core.py |
766 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Details | project/tests/test_core.py:766: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Standard output | |
Standard error | |
|
|
project.tests.test_core.TestKarrLabBuildUtils |
test__run_docker_command_ex... |
project/tests/test_core.py |
777 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Details | project/tests/test_core.py:777: Test requires Docker and Docker isnt installed. See installation instructions at `https://docs.karrlab.org/intro_to_wc_modeling/latest/installation.html` |
Standard output | |
Standard error | |
|