|
project.tests.test_api.ApiTestCase |
test |
project/tests/test_api.py |
14 |
Pass |
0.002 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_kb_read.KbReadTestCase |
test |
project/tests/test_kb_read.py |
14 |
Skipped |
0.003 |
| Result type | pytest.skip |
|---|
| Message | does not pass on circle, chekc configs |
|---|
| Details | project/tests/test_kb_read.py:14: does not pass on circle, chekc configs |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_main.TestCli |
test_analyze |
project/tests/test_main.py |
125 |
Skipped |
0.002 |
| Result type | pytest.skip |
|---|
| Message | Need to fix chemical imbalance before being able to run model. |
|---|
| Details | project/tests/test_main.py:125: Need to fix chemical imbalance before being able to run model. |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.analysis.test_analysis_core.Test |
test_constructor |
project/tests/analysis/test... |
14 |
Pass |
0.003 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_main.TestCli |
test_gen_model |
project/tests/test_main.py |
62 |
Pass |
27.922 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_config.Test |
test_get_config |
project/tests/test_config.py |
18 |
Pass |
0.005 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_config.Test |
test_get_debug_logs_config |
project/tests/test_config.py |
24 |
Pass |
0.005 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_main.TestCli |
test_get_version |
project/tests/test_main.py |
49 |
Pass |
0.155 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | 0.0.1
0.0.1
|
|---|
|
|
project.tests.test_main.TestCli |
test_raw_cli |
project/tests/test_main.py |
38 |
Pass |
0.098 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | usage: mycoplasma-pneumoniae [-h] [-d] [-q] [-v] {run,analyze,sim,gen} ...
Mycoplasma pneumoniae whole-cell model
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{run,analyze,sim,gen}
run Generate model, optionally save model, simulate model,
optionally save simulation results, analyze simulation
results, and save analyses
analyze Analyze knowledge base, model, and simulation results
and save analyses
sim Simulate model and save simulation results
gen Generate model from knowledge base and save model
|
|---|
| Standard error | usage: mycoplasma-pneumoniae [-h] [-d] [-q] [-v] {run,analyze,sim,gen} ...
Mycoplasma pneumoniae whole-cell model
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{run,analyze,sim,gen}
run Generate model, optionally save model, simulate model,
optionally save simulation results, analyze simulation
results, and save analyses
analyze Analyze knowledge base, model, and simulation results
and save analyses
sim Simulate model and save simulation results
gen Generate model from knowledge base and save model
|
|---|
|
|
project.tests.test_main.TestCli |
test_run |
project/tests/test_main.py |
184 |
Skipped |
0.003 |
| Result type | pytest.skip |
|---|
| Message | Need to fix chemical imbalance before being able to run model. |
|---|
| Details | project/tests/test_main.py:184: Need to fix chemical imbalance before being able to run model. |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.analysis.test_analysis_core.Test |
test_run |
project/tests/analysis/test... |
18 |
Pass |
0.003 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_full_model.TestFullModel |
test_self_replication |
project/tests/test_full_mod... |
131 |
Skipped |
0.002 |
| Result type | pytest.skip |
|---|
| Message | No model yet |
|---|
| Details | /usr/local/lib/python3.7/site-packages/_pytest/unittest.py:237: No model yet |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.test_main.TestCli |
test_sim_model |
project/tests/test_main.py |
77 |
Skipped |
0.003 |
| Result type | pytest.skip |
|---|
| Message | Need to fix chemical imbalance before being able to run model. |
|---|
| Details | project/tests/test_main.py:77: Need to fix chemical imbalance before being able to run model. |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.analysis.test_analysis_sim_result... |
test_SingleCellAnalysis |
project/tests/analysis/test... |
32 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Need to update to be in sync with new model generator / wc_sim |
|---|
| Details | project/tests/analysis/test_analysis_sim_results.py:32: Need to update to be in sync with new model generator / wc_sim |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.analysis.test_analysis_model.Test |
test_skeleton |
project/tests/analysis/test... |
32 |
Skipped |
0.001 |
| Result type | pytest.skip |
|---|
| Message | Need to update to be in sync with new model generator / wc_sim |
|---|
| Details | project/tests/analysis/test_analysis_model.py:32: Need to update to be in sync with new model generator / wc_sim |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
|
project.tests.analysis.test_analysis_kb.Test |
test_TranscriptLengthAnalysis |
project/tests/analysis/test... |
28 |
Pass |
0.915 |
| Result type | |
|---|
| Message | |
|---|
| Details | |
|---|
| Standard output | |
|---|
| Standard error | |
|---|
|
