KarrLab / wc_sim / #1586 / 3.6.8

Info

Statistics

  • Test classes: 41
  • Test cases: 167
  • Pass rate (%): 99.4
  • Time (s): 163.63

Test cases

Class Case File Line Result Time (s)
tests.test_api.ApiTestCase test tests/test_api.py 15 Pass 0.001
tests.test_dynamic_components.TestInitialDynami... test tests/test_dynamic_componen... 50 Pass 0.416
tests.test_dynamic_mass.MetabolismAndGeneExpres... test tests/test_dynamic_mass.py 463 Pass 14.035
tests.test_wc_lang_files_are_valid.ValidateWcLa... test tests/test_wc_lang_files_ar... 28 Pass 7.464
tests.test_species_populations.TestAccessSpecie... test_add_species_locations tests/test_species_populati... 79 Pass 0.012
tests.testing.test_make_models.TestMakeModels test_add_test_submodel tests/testing/test_make_mod... 207 Pass 0.023
tests.test_species_populations.TestLocalSpecies... test_adjustment_exceptions tests/test_species_populati... 368 Pass 0.004
tests.test_aggregate_distributed_props.TestAggr... test_aggregate_distributed_... tests/test_aggregate_distri... 226 Pass 0.085
tests.test_aggregate_distributed_props.TestAggr... test_aggregate_distributed_... tests/test_aggregate_distri... 256 Pass 0.015
tests.test_aggregate_distributed_props.TestAggr... test_aggregate_distributed_... tests/test_aggregate_distri... 273 Pass 0.013
tests.test_aggregate_distributed_props.TestDist... test_all tests/test_aggregate_distri... 45 Pass 0.005
tests.test_sim_config.TestSimulationConfig test_apply_changes tests/test_sim_config.py 107 Pass 0.005
tests.test_sim_config.TestSimulationConfig test_apply_perturbations tests/test_sim_config.py 162 Skipped 0.001
tests.test_multialgorithm_main.SimControllerTes... test_app_run tests/test_multialgorithm_m... 44 Pass 1.453
tests.test_species_populations.TestDynamicSpeci... test_assertions tests/test_species_populati... 745 Pass 0.002
tests.test_multialgorithm_simulation.TestMultia... test_build_simulation tests/test_multialgorithm_s... 197 Pass 0.504
tests.submodels.test_submodels.TestDynamicSubmo... test_calc_reaction_rates tests/submodels/test_submod... 102 Pass 0.949
tests.testing.test_utils.TestTestingUtils test_check_simul_results tests/testing/test_utils.py 33 Pass 1.362
tests.test_simulation.TestProcessAndValidateArgs test_ckpt_dir_processing_1 tests/test_simulation.py 192 Pass 0.355
tests.test_simulation.TestProcessAndValidateArgs test_ckpt_dir_processing_2 tests/test_simulation.py 198 Pass 0.349
tests.test_simulation.TestProcessAndValidateArgs test_ckpt_dir_processing_3 tests/test_simulation.py 207 Pass 0.326
tests.test_message_types.Test test_continuous_change tests/test_message_types.py 24 Pass 0.001
tests.test_multialgorithm_simulation.TestMultia... test_create_dynamic_compart... tests/test_multialgorithm_s... 124 Pass 0.435
tests.test_simulation.TestProcessAndValidateArgs test_create_metadata_1 tests/test_simulation.py 175 Pass 0.526
tests.test_simulation.TestProcessAndValidateArgs test_create_metadata_2 tests/test_simulation.py 185 Pass 0.823
tests.submodels.test_odes.TestOdeSubmodel test_create_ode_solver tests/submodels/test_odes.py 97 Pass 0.124
tests.submodels.test_odes.TestOdeSubmodel test_current_species_popula... tests/submodels/test_odes.py 123 Pass 0.112
tests.on_ROSS.test_try_c_and_python.TestTryCand... test_c_call_python tests/on_ROSS/test_try_c_an... 47 Skipped 0.001
tests.submodels.test_submodels.TestDeterministi... test_deterministic_simulati... tests/submodels/test_submod... 250 Failure 0.421
tests.test_species_populations.TestLocalSpecies... test_discrete_and_hybrid tests/test_species_populati... 362 Pass 0.004
tests.test_aggregate_distributed_props.TestDist... test_distributed_property_f... tests/test_aggregate_distri... 330 Pass 0.001
tests.test_dynamic_components.TestDynamicModel test_dry_dynamic_model tests/test_dynamic_componen... 620 Skipped 1.045
tests.test_dynamic_components.TestUninitialized... test_dynamic_compartment tests/test_dynamic_componen... 394 Pass 0.002
tests.test_dynamic_components.TestDynamics test_dynamic_compartments tests/test_dynamic_componen... 364 Pass 0.016
tests.test_dynamic_components.TestUninitialized... test_dynamic_compartment_ex... tests/test_dynamic_componen... 402 Pass 0.002
tests.test_dynamic_components.TestDynamicModel test_dynamic_components tests/test_dynamic_componen... 559 Pass 0.692
tests.test_dynamic_components.TestDynamics test_dynamic_expressions tests/test_dynamic_componen... 333 Pass 5.240
tests.test_dynamic_components.TestDynamicCompon... test_dynamic_expression_errors tests/test_dynamic_componen... 226 Pass 0.007
tests.test_dynamic_components.TestDynamicModel test_dynamic_model tests/test_dynamic_componen... 553 Pass 0.014
tests.test_species_populations.TestDynamicSpeci... test_dynamic_species_state tests/test_species_populati... 560 Pass 0.001
tests.submodels.test_submodels.TestDynamicSubmo... test_enabled_reaction tests/submodels/test_submod... 138 Pass 0.677
tests.test_sim_config.TestSedMlImportExport test_error tests/test_sim_config.py 244 Pass 0.001
tests.test_multialgorithm_errors.TestMultialgor... test_errors tests/test_multialgorithm_e... 16 Pass 0.001
tests.submodels.test_submodels.TestDynamicSubmo... test_execute_disabled_react... tests/submodels/test_submod... 154 Pass 0.456
tests.submodels.test_submodels.TestDynamicSubmo... test_execute_reaction tests/submodels/test_submod... 178 Pass 0.451
tests.test_dynamic_mass.TwoSpeciesTestCase test_exponentially_descend_... tests/test_dynamic_mass.py 268 Pass 2.331
tests.test_dynamic_mass.TwoSpeciesTestCase test_exponentially_increase... tests/test_dynamic_mass.py 235 Pass 3.537
tests.test_dynamic_mass.TwoSpeciesTestCase test_exponentially_increase... tests/test_dynamic_mass.py 204 Pass 2.418
tests.test_dynamic_mass.TwoSpeciesTestCase test_exponentially_increase... tests/test_dynamic_mass.py 313 Pass 22.367
tests.test_model_utilities.TestModelUtilities test_find_private_species tests/test_model_utilities.py 32 Pass 0.461
tests.test_model_utilities.TestModelUtilities test_find_shared_species tests/test_model_utilities.py 52 Pass 0.464
tests.test_dynamic_components.TestInitializedDy... test_fold_changes tests/test_dynamic_componen... 490 Pass 0.012
tests.test_multialgorithm_simulation.TestMultia... test_get_dynamic_compartments tests/test_multialgorithm_s... 211 Pass 0.718
tests.test_dynamic_components.TestDynamicCompon... test_get_dynamic_component tests/test_dynamic_componen... 173 Pass 0.005
tests.test_dynamic_components.TestDynamicCompon... test_get_dynamic_model_type tests/test_dynamic_componen... 151 Pass 0.006
tests.submodels.test_submodels.TestDynamicSubmo... test_get_num_submodels tests/submodels/test_submod... 91 Pass 0.452
tests.test_sim_config.TestSimulationConfig test_get_num_time_steps tests/test_sim_config.py 168 Pass 0.001
tests.test_simulation.TestSimulation test_get_simulation_engine tests/test_simulation.py 138 Pass 0.199
tests.test_model_utilities.TestModelUtilities test_get_species_types tests/test_model_utilities.py 60 Pass 0.680
tests.submodels.test_submodels.TestDynamicSubmo... test_get_state tests/submodels/test_submod... 87 Pass 0.460
tests.test_main.CliTestCase test_get_version tests/test_main.py 32 Pass 0.020
tests.test_multialgorithm_simulation.TestMultia... test_hand_solved_models tests/test_multialgorithm_s... 254 Pass 23.636
tests.test_species_populations.TestDynamicSpeci... test_history tests/test_species_populati... 778 Pass 0.001
tests.test_species_populations.TestLocalSpecies... test_history tests/test_species_populati... 383 Pass 0.004
tests.submodels.test_submodels.TestDynamicSubmo... test_identify_enabled_react... tests/submodels/test_submod... 146 Pass 0.474
tests.test_sim_config.TestSedMlValidation test_ignore_model_attribute tests/test_sim_config.py 267 Pass 0.003
tests.test_multialgorithm_simulation.TestMultia... test_init tests/test_multialgorithm_s... 90 Pass 0.535
tests.test_species_populations.TestLocalSpecies... test_init tests/test_species_populati... 285 Pass 0.004
tests.test_species_populations.TestSpeciesPopSi... test_init tests/test_species_populati... 861 Pass 0.014
tests.test_multialgorithm_simulation.TestMultia... test_initialize_components tests/test_multialgorithm_s... 174 Pass 0.433
tests.test_multialgorithm_simulation.TestMultia... test_initialize_infrastructure tests/test_multialgorithm_s... 181 Pass 0.491
tests.test_dynamic_components.TestInitializedDy... test_initialize_mass_and_de... tests/test_dynamic_componen... 463 Pass 0.011
tests.test_multialgorithm_simulation.TestMultia... test_init_species_pop_from_... tests/test_multialgorithm_s... 142 Pass 0.469
tests.test_dynamic_components.TestInitializedDy... test_init_volume_and_eval tests/test_dynamic_componen... 496 Pass 0.011
tests.test_sim_config.TestSedMlValidation test_invalid_algorithm_para... tests/test_sim_config.py 440 Pass 0.002
tests.test_species_populations.TestSpeciesPopSi... test_invalid_event_types tests/test_species_populati... 865 Pass 0.014
tests.test_sim_config.TestSedMlValidation test_invalid_kisao_id tests/test_sim_config.py 352 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_invalid_random_seed_float tests/test_sim_config.py 392 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_invalid_random_seed_st... tests/test_sim_config.py 370 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_invalid_set_value tests/test_sim_config.py 486 Pass 0.002
tests.test_species_populations.TestLocalSpecies... test_invalid_weights tests/test_species_populati... 461 Pass 0.003
tests.test_multialgorithm_simulation.TestMultia... test_make_local_species_pop... tests/test_multialgorithm_s... 155 Pass 0.514
tests.test_species_populations.TestLocalSpecies... test_make_test_lsp tests/test_species_populati... 476 Pass 0.004
tests.testing.test_make_models.TestMakeModels test_make_test_model tests/testing/test_make_mod... 39 Pass 41.559
tests.testing.test_make_models.TestMakeModels test_make_test_model_init_vols tests/testing/test_make_mod... 145 Pass 0.417
tests.test_species_populations.TestLocalSpecies... test_mass tests/test_species_populati... 434 Pass 0.003
tests.test_aggregate_distributed_props.TestDist... test_median tests/test_aggregate_distri... 326 Pass 0.001
tests.test_message_types.Test test_message_types tests/test_message_types.py 18 Pass 0.001
tests.test_main.CliTestCase test_migration_handlers tests/test_main.py 47 Pass 0.184
tests.test_multialgorithm_simulation.TestMultia... test_molecular_weights_for_... tests/test_multialgorithm_s... 95 Pass 0.767
tests.test_multialgorithm_errors.TestMultialgor... test_negative_population_error tests/test_multialgorithm_e... 30 Pass 0.001
tests.test_sim_config.TestSedMlValidation test_not_unique_algorithm_p... tests/test_sim_config.py 414 Pass 0.003
tests.test_sim_config.TestSedMlValidation test_no_data_descriptions tests/test_sim_config.py 687 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_data_generators tests/test_sim_config.py 661 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_functional_range tests/test_sim_config.py 540 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_initial_time tests/test_sim_config.py 325 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_model tests/test_sim_config.py 260 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_multiple_vector_ranges tests/test_sim_config.py 772 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_non_change_attributes tests/test_sim_config.py 289 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_non_linear_uniform_... tests/test_sim_config.py 803 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_non_repeated_task tests/test_sim_config.py 569 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_number_of_points tests/test_sim_config.py 739 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_outputs tests/test_sim_config.py 713 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_output_start_time tests/test_sim_config.py 338 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_range tests/test_sim_config.py 513 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_simulations tests/test_sim_config.py 314 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_subtasks tests/test_sim_config.py 593 Pass 0.002
tests.test_sim_config.TestSedMlValidation test_no_task_change tests/test_sim_config.py 462 Pass 0.002
tests.submodels.test_odes.TestOdeSubmodel test_ode_submodel_init tests/submodels/test_odes.py 59 Pass 0.070
tests.test_multialgorithm_simulation.TestMultia... test_one_reaction_constant_... tests/test_multialgorithm_s... 261 Pass 0.463
tests.test_species_populations.TestLocalSpecies... test_optional_species_argument tests/test_species_populati... 317 Pass 0.003
tests.test_species_populations.TestAccessSpecie... test_other_exceptions tests/test_species_populati... 99 Pass 0.009
tests.test_multialgorithm_simulation.TestRunSSA... test_performance tests/test_multialgorithm_s... 466 Skipped 0.001
tests.test_species_populations.TestAccessSpecie... test_population_changes tests/test_species_populati... 108 Skipped 0.001
tests.test_simulation.TestSimulation test_prepare tests/test_simulation.py 50 Pass 0.032
tests.test_multialgorithm_simulation.TestMultia... test_prepare_dynamic_compar... tests/test_multialgorithm_s... 131 Pass 0.436
tests.test_simulation.TestProcessAndValidateArgs test_process_and_validate_a... tests/test_simulation.py 215 Pass 0.377
tests.test_simulation.TestProcessAndValidateArgs test_process_and_validate_a... tests/test_simulation.py 220 Pass 0.334
tests.test_simulation.TestProcessAndValidateArgs test_process_and_validate_a... tests/test_simulation.py 227 Pass 0.342
tests.test_simulation.TestProcessAndValidateArgs test_process_and_validate_a... tests/test_simulation.py 232 Pass 0.372
tests.test_simulation.TestProcessAndValidateArgs test_process_and_validate_a... tests/test_simulation.py 239 Pass 0.325
tests.test_simulation.TestProcessAndValidateArgs test_process_and_validate_a... tests/test_simulation.py 257 Pass 0.405
tests.test_simulation.TestProcessAndValidateArgs test_process_and_validate_a... tests/test_simulation.py 262 Pass 0.351
tests.test_simulation.TestSimulation test_provide_event_counts tests/test_simulation.py 146 Pass 0.204
tests.on_ROSS.test_try_c_and_python.TestTryCand... test_python_call_c tests/on_ROSS/test_try_c_an... 32 Skipped 0.001
tests.test_species_populations.TestDynamicSpeci... test_raise_NegativePopulati... tests/test_species_populati... 709 Pass 0.001
tests.test_main.CliTestCase test_raw_cli tests/test_main.py 20 Pass 0.024
tests.test_species_populations.TestLocalSpecies... test_read_one tests/test_species_populati... 326 Pass 0.003
tests.test_simulation.TestSimulation test_reseed tests/test_simulation.py 99 Pass 4.573
tests.submodels.test_odes.TestOdeSubmodel test_right_hand_side tests/submodels/test_odes.py 100 Pass 0.059
tests.test_multialgorithm_simulation.TestRunSSA... test_runtime_errors tests/test_multialgorithm_s... 412 Pass 1.838
tests.test_multialgorithm_simulation.TestRunSSA... test_run_multiple_ssa_submo... tests/test_multialgorithm_s... 429 Skipped 0.001
tests.submodels.test_odes.TestOdeSubmodel test_run_ode_solver tests/submodels/test_odes.py 128 Pass 0.059
tests.submodels.test_odes.TestOdeSubmodel test_run_ode_solver_2 tests/submodels/test_odes.py 139 Skipped 0.001
tests.test_run_results.TestRunResults test_run_results tests/test_run_results.py 39 Pass 0.852
tests.test_run_results.TestRunResults test_run_results_errors tests/test_run_results.py 63 Pass 0.519
tests.test_multialgorithm_simulation.TestRunSSA... test_run_ssa_suite tests/test_multialgorithm_s... 383 Skipped 0.001
tests.test_model_utilities.TestModelUtilities test_sample_copy_num_from_c... tests/test_model_utilities.py 67 Pass 0.435
tests.submodels.test_odes.TestOdeSubmodel test_schedule_next_ode_anal... tests/submodels/test_odes.py 153 Skipped 0.001
tests.test_sim_config.TestSedMlImportExport test_sedml_import_export tests/test_sim_config.py 175 Pass 0.016
tests.submodels.test_odes.TestOdeSubmodel test_set_up_ode_submodel tests/submodels/test_odes.py 83 Pass 0.053
tests.submodels.test_odes.TestOdeSubmodel test_set_up_optimizations tests/submodels/test_odes.py 68 Pass 0.054
tests.test_dynamic_components.TestDynamicCompon... test_simple_dynamic_express... tests/test_dynamic_componen... 191 Pass 0.005
tests.test_simulation.TestSimulation test_simulate tests/test_simulation.py 87 Pass 1.020
tests.submodels.test_submodels.TestDeterministi... test_simulate_deterministic... tests/submodels/test_submod... 307 Pass 0.548
tests.test_simulation.TestSimulation test_simulate_wo_output_files tests/test_simulation.py 81 Pass 0.857
tests.test_species_populations.TestAccessSpecie... test_simulation tests/test_species_populati... 183 Skipped 0.001
tests.test_sim_config.TestSimulationConfig test_simulation_configuration tests/test_sim_config.py 26 Pass 0.001
tests.test_sim_config.TestSimulationConfig test_simulation_configurati... tests/test_sim_config.py 69 Pass 0.001
tests.test_simulation.TestSimulation test_simulation_errors tests/test_simulation.py 65 Pass 0.213
tests.test_simulation.TestSimulation test_simulation_model_in_file tests/test_simulation.py 58 Pass 1.133
tests.test_simulation.TestSimulation test_simulation_model_in_me... tests/test_simulation.py 61 Pass 0.473
tests.examples.test_simulation_run.TestSimulati... test_simulation_run tests/examples/test_simulat... 15 Pass 3.694
tests.submodels.test_submodels.TestSkeletonSubm... test_skeleton_submodel tests/submodels/test_submod... 205 Pass 0.528
tests.submodels.test_odes.TestOdeSubmodel test_solver_lock tests/submodels/test_odes.py 75 Pass 0.059
tests.test_species_populations.TestSpeciesPopul... test_species_population_cache tests/test_species_populati... 514 Pass 0.001
tests.test_species_populations.TestSpeciesPopul... test_species_population_cac... tests/test_species_populati... 523 Pass 0.003
tests.test_species_populations.TestDynamicSpeci... test_species_stochastic_rou... tests/test_species_populati... 766 Pass 0.010
tests.test_species_populations.TestDynamicSpeci... test_species_with_interpola... tests/test_species_populati... 618 Pass 0.001
tests.submodels.test_ssa.TestSsaSubmodel test_SSA_submodel_init tests/submodels/test_ssa.py 35 Pass 0.058
tests.test_species_populations.TestAccessSpecie... test_stable_simulation tests/test_species_populati... 212 Skipped 0.001
tests.submodels.test_ssa.TestSsaSubmodel test_static_SSA_submodel_me... tests/submodels/test_ssa.py 40 Pass 0.158
tests.test_dynamic_components.TestInitializedDy... test_str tests/test_dynamic_componen... 503 Pass 0.030
tests.test_multialgorithm_simulation.TestMultia... test_str tests/test_multialgorithm_s... 222 Pass 0.453
tests.test_species_populations.TestDynamicSpeci... test_text_output tests/test_species_populati... 601 Pass 0.001
tests.test_species_populations.TestDynamicSpeci... test_validation tests/test_species_populati... 651 Pass 0.003
tests.test_sim_config.TestSedMlImportExport test_warning tests/test_sim_config.py 247 Pass 0.001