|
tests.test_api.ApiTestCase |
test |
tests/test_api.py |
15 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestInitialDynami... |
test |
tests/test_dynamic_componen... |
69 |
Pass |
0.456 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestHybridModelVerifi... |
test |
tests/testing/test_verify.py |
1152 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | incomplete |
Details | tests/testing/test_verify.py:1152: incomplete |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestCacheManager |
test |
tests/test_dynamic_componen... |
973 |
Pass |
0.046 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_mass.MetabolismAndGeneExpres... |
test |
tests/test_dynamic_mass.py |
463 |
Pass |
16.940 |
Result type | |
Message | |
Details | |
Standard output | Simulated 3895 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 76038 3894 0.95 3892 975 0.80
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 5202 64926 0.07 64908 0 1.00
DynamicCompartment 2314 3894 0.37 3892 3320 0.54
Saved checkpoints and run results in '/tmp/tmpxw83rpxh'
|
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|
|
tests.test_multialgorithm_errors.TestNegativePo... |
test |
tests/test_multialgorithm_e... |
46 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestMakeDataFrame |
test |
tests/test_run_results.py |
311 |
Pass |
2.144 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestTempPopulati... |
test |
tests/test_species_populati... |
687 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_wc_lang_files_are_valid.ValidateWcLa... |
test |
tests/test_wc_lang_files_ar... |
115 |
Pass |
24.881 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestUninitialized... |
test_abstract_dynamic_compa... |
tests/test_dynamic_componen... |
458 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_accounted_volumes_for_... |
tests/test_species_populati... |
504 |
Pass |
0.500 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestAccessSpecie... |
test_add_species_locations |
tests/test_species_populati... |
91 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | AccessSpeciesPopulations isn't being used |
Details | tests/test_species_populations.py:91: AccessSpeciesPopulations isn't being used |
Standard output | |
Standard error | |
|
|
tests.testing.test_make_models.TestMakeModels |
test_add_test_submodel |
tests/testing/test_make_mod... |
207 |
Pass |
0.026 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_adjustment_exceptions |
tests/test_species_populati... |
436 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_adjust_continuously_wi... |
tests/test_species_populati... |
413 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_aggregate_distributed_props.TestAggr... |
test_aggregate_distributed_... |
tests/test_aggregate_distri... |
219 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | aggregate_distributed_props not currently used |
Details | tests/test_aggregate_distributed_props.py:219: aggregate_distributed_props not currently used |
Standard output | |
Standard error | |
|
|
tests.test_aggregate_distributed_props.TestAggr... |
test_aggregate_distributed_... |
tests/test_aggregate_distri... |
250 |
Pass |
0.123 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_aggregate_distributed_props.TestAggr... |
test_aggregate_distributed_... |
tests/test_aggregate_distri... |
267 |
Pass |
0.117 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_aggregate_state_proper... |
tests/test_run_results.py |
172 |
Pass |
0.084 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicModel |
test_agregate_properties |
tests/test_dynamic_componen... |
896 |
Pass |
1.549 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_aggregate_distributed_props.TestDist... |
test_all |
tests/test_aggregate_distri... |
45 |
Pass |
0.007 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestWCSimulationConfig |
test_apply_changes |
tests/test_sim_config.py |
172 |
Pass |
0.007 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestWCSimulationConfig |
test_apply_perturbations |
tests/test_sim_config.py |
227 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_main.SimControllerTes... |
test_app_run |
tests/test_multialgorithm_m... |
44 |
Pass |
1.555 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_bound_neg_species_pop_... |
tests/submodels/test_dfba.py |
454 |
Pass |
0.528 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_build_simulation |
tests/test_multialgorithm_s... |
253 |
Pass |
0.806 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicModel |
test_cache_settings |
tests/test_dynamic_componen... |
957 |
Pass |
0.127 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestCacheManager |
test_caching_stats |
tests/test_dynamic_componen... |
1092 |
Pass |
0.014 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDynam... |
test_calc_reaction_rates |
tests/submodels/test_dynami... |
70 |
Pass |
0.910 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestCaseVerifier |
test_case_verifier |
tests/testing/test_verify.py |
597 |
Pass |
28.358 |
Result type | |
Message | |
Details | |
Standard output | starting run 1 of 10 of model test_case_00001
starting run 2 of 10 of model test_case_00001
starting run 4 of 10 of model test_case_00001
starting run 8 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: min
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
R14_forward 1e+03
R03_backward 1e+03
R02_forward 1e+03
R04_backward 1e+03
R19_backward 1e+03
R21_backward 1e+03
R20_backward 1e+03
objective 0
starting run 1 of 10 of model test_case_00001
starting run 2 of 10 of model test_case_00001
starting run 4 of 10 of model test_case_00001
starting run 8 of 10 of model test_case_00001
|
Standard error | N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 85 days, 17:52:00
14% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 20/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 28/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
63% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
82% 41/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 46/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 78 days, 19:43:40
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
25% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
36% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
45% 22/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
53% 26/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
74% 37/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 42/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 46/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 78 days, 2:05:57
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
25% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
34% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 22/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
63% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
71% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
82% 41/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
96% 48/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 75 days, 6:11:03
13% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
27% 13/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
34% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
41% 20/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
71% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
94% 47/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 73 days, 16:00:44
14% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
58% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
87% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
99% 49/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 79 days, 13:54:26
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 20/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
58% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
71% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
83% 41/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 ETA: 00:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 82 days, 18:19:31
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
49% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
58% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
65% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
73% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
81% 40/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
91% 45/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 71 days, 10:46:54
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:00
33% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 22/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
49% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
59% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
69% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
74% 37/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
81% 40/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
87% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
93% 46/50 (max_time) |################ | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 72 days, 5:41:33
14% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
57% 28/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
81% 40/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
91% 45/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 69 days, 1:08:10
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:00
28% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
36% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
49% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 30/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
71% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 42/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
16% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 6 days, 18:29:57
32% 1/5 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 2/5 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 3/5 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 4/5 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 ETA: 00:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 1/1 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 77 days, 18:30:58
13% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
67% 33/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
93% 46/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 67 days, 4:31:30
17% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 20/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 42/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
98% 49/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 74 days, 15:36:42
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
38% 19/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
45% 22/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
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|
tests.testing.test_verify.TestCaseVerifier |
test_case_verifier_errors |
tests/testing/test_verify.py |
569 |
Pass |
2.370 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_utils.TestTestingUtils |
test_check_simul_results |
tests/testing/test_utils.py |
37 |
Pass |
1.471 |
Result type | |
Message | |
Details | |
Standard output | Simulated 5 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 3 0.00 2 0 1.00
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 3 0.00 2 0 1.00
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 5 1 0.83 0 0 nan
DynamicCompartment 25 3 0.89 2 0 1.00
Saved checkpoints and run results in '/tmp/tmpedg4t6yy/tmpyvdpi0fr'
no expected data for plot of test_model species trajectories using ordinary_differential_equations
|
Standard error | N/A% 0/2 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/2 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 2/2 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_compute_population_cha... |
tests/submodels/test_dfba.py |
546 |
Pass |
0.360 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_compute_population_cha... |
tests/submodels/test_odes.py |
168 |
Pass |
1.810 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_concentrations_api |
tests/test_species_populati... |
480 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_message_types.Test |
test_continuous_change |
tests/test_message_types.py |
24 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_continuous_change |
tests/test_species_populati... |
820 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicModel |
test_continuous_reaction_de... |
tests/test_dynamic_componen... |
715 |
Pass |
0.159 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_convert_metadata |
tests/test_run_results.py |
201 |
Pass |
0.085 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.RunVerificationSuite |
test_convert_sbml_to_wc_lang |
tests/testing/test_verify.py |
1029 |
Skipped |
0.003 |
Result type | pytest.skip |
Message | Fails on first 150 SBML models in the test suite |
Details | tests/testing/test_verify.py:1029: Fails on first 150 SBML models in the test suite |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_convert_to_sbml |
tests/test_multialgorithm_s... |
335 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | sbml_io.SbmlWriter fails |
Details | tests/test_multialgorithm_simulation.py:335: sbml_io.SbmlWriter fails |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_create_dynamic_compart... |
tests/test_multialgorithm_s... |
144 |
Pass |
0.427 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_create_ode_solver |
tests/submodels/test_odes.py |
94 |
Pass |
0.080 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_utils.TestTestingUtils |
test_create_run_directory |
tests/testing/test_utils.py |
146 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_current_species_popula... |
tests/submodels/test_odes.py |
180 |
Pass |
0.081 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_current_species_popula... |
tests/submodels/test_dfba.py |
558 |
Pass |
0.374 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.on_ROSS.test_try_c_and_python.TestTryCand... |
test_c_call_python |
tests/on_ROSS/test_try_c_an... |
47 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | skip until dependencies work on Circle/Docker |
Details | tests/on_ROSS/test_try_c_and_python.py:47: skip until dependencies work on Circle/Docker |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_dataframes_are_close |
tests/test_run_results.py |
248 |
Pass |
0.088 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_determine_bounds |
tests/submodels/test_dfba.py |
476 |
Pass |
0.451 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_nrm.TestNrmSubmodel |
test_determine_dependencies |
tests/submodels/test_nrm.py |
50 |
Pass |
1.081 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDsaSu... |
test_deterministic_simulati... |
tests/submodels/test_dynami... |
213 |
Pass |
0.538 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_dfba_submodel_init |
tests/submodels/test_dfba.py |
126 |
Pass |
2.358 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_discrete_and_hybrid |
tests/test_species_populati... |
397 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_aggregate_distributed_props.TestDist... |
test_distributed_property_f... |
tests/test_aggregate_distri... |
306 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationSuite |
test_dump_results |
tests/testing/test_verify.py |
697 |
Pass |
3.258 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
16% 0/5 (max_time) |## | Elapsed Time: 0:00:00 ETA: 7 days, 2:33:55
32% 1/5 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 2/5 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 3/5 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 4/5 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
14% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 7 days, 19:56:14
28% 1/5 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
42% 2/5 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 2/5 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 3/5 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 4/5 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
96% 4/5 (max_time) |################### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.test_dynamic_components.TestUninitialized... |
test_dynamic_compartment |
tests/test_dynamic_componen... |
450 |
Pass |
0.005 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamics |
test_dynamic_compartments |
tests/test_dynamic_componen... |
414 |
Pass |
0.024 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestUninitialized... |
test_dynamic_compartment_ex... |
tests/test_dynamic_componen... |
462 |
Pass |
0.007 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamics |
test_dynamic_expressions |
tests/test_dynamic_componen... |
380 |
Pass |
5.453 |
Result type | |
Message | |
Details | |
Standard output |
Expression performance (usec/eval) for 10000 evals:
Static Dynamic id Expression
5.9 19.6 observable_1 a[c1]
6.3 33.9 observable_2 2 * a[c1] - b[c2]
10.3 43.4 observable_3 3 * observable_1 + b[c2]
11.0 16.4 function_1 param - 2 + max(param, 10)
20.8 77.3 function_2 observable_1 + min(observable_2, 10 * molecule_units)
27.6 84.5 function_3 2 * function_2
23.9 54.8 function_4 3 * observable_1 + function_1 * molecule_units
11.2 15.3 stopcondition_1 10 < 2 * log10(100) + 2 * param
23.8 56.4 stopcondition_2 observable_1 < param * molecule_units + function_1
|
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicCompon... |
test_dynamic_expression_errors |
tests/test_dynamic_componen... |
273 |
Pass |
0.012 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicModel |
test_dynamic_model |
tests/test_dynamic_componen... |
660 |
Pass |
0.132 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_dynamic_species_state_... |
tests/test_species_populati... |
764 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDynam... |
test_enabled_reaction |
tests/submodels/test_dynami... |
116 |
Pass |
0.405 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlImportExport |
test_error |
tests/test_sim_config.py |
331 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_errors.TestMultialgor... |
test_errors |
tests/test_multialgorithm_e... |
19 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_errors |
tests/test_run_results.py |
84 |
Pass |
0.084 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDynam... |
test_execute_disabled_react... |
tests/submodels/test_dynami... |
132 |
Pass |
0.386 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDynam... |
test_execute_reaction |
tests/submodels/test_dynami... |
155 |
Pass |
0.456 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_utils.TestTestingUtils |
test_expected_dependencies |
tests/testing/test_utils.py |
141 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_mass.TwoSpeciesTestCase |
test_exponentially_descend_... |
tests/test_dynamic_mass.py |
268 |
Pass |
1.807 |
Result type | |
Message | |
Details | |
Standard output | Simulated 694 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 21 180 0.10 179 314 0.36
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 2283 497 0.82 493 0 1.00
DynamicCompartment 1609 180 0.90 179 314 0.36
Saved checkpoints and run results in '/tmp/tmpddadw1mw'
|
Standard error | N/A% 0/200 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/200 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 12/200 (max_time) | | Elapsed Time: 0:00:00 ETA: 253 days, 1:21:28
11% 22/200 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:01
17% 35/200 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
25% 51/200 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 65/200 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
41% 82/200 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 101/200 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 121/200 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
69% 139/200 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 154/200 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 173/200 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
96% 192/200 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 200/200 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.test_dynamic_mass.TwoSpeciesTestCase |
test_exponentially_increase... |
tests/test_dynamic_mass.py |
235 |
Pass |
2.370 |
Result type | |
Message | |
Details | |
Standard output | Simulated 2138 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 201 0.00 200 1737 0.10
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 6615 1941 0.77 1937 0 1.00
DynamicCompartment 1609 201 0.89 200 1737 0.10
Saved checkpoints and run results in '/tmp/tmpsvzdt94t'
|
Standard error | N/A% 0/200 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/200 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 10/200 (max_time) | | Elapsed Time: 0:00:00 ETA: 264 days, 11:27:17
8% 17/200 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
11% 23/200 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
15% 30/200 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
19% 38/200 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
22% 45/200 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 53/200 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 60/200 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
34% 68/200 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
38% 76/200 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
41% 83/200 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
45% 91/200 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:01
49% 98/200 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
53% 106/200 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 114/200 (max_time) |######### | Elapsed Time: 0:00:01 ETA: 0:00:00
60% 121/200 (max_time) |######### | Elapsed Time: 0:00:01 ETA: 0:00:00
64% 129/200 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:00
68% 136/200 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:00
72% 144/200 (max_time) |########### | Elapsed Time: 0:00:01 ETA: 0:00:00
76% 152/200 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
79% 159/200 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
83% 167/200 (max_time) |############# | Elapsed Time: 0:00:01 ETA: 0:00:00
87% 174/200 (max_time) |############# | Elapsed Time: 0:00:01 ETA: 0:00:00
91% 182/200 (max_time) |############## | Elapsed Time: 0:00:01 ETA: 0:00:00
94% 189/200 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
99% 198/200 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 200/200 (max_time) |################| Elapsed Time: 0:00:01 Time: 0:00:01
|
|
|
tests.test_dynamic_mass.TwoSpeciesTestCase |
test_exponentially_increase... |
tests/test_dynamic_mass.py |
204 |
Pass |
1.228 |
Result type | |
Message | |
Details | |
Standard output | Simulated 579 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 30 171 0.15 170 208 0.45
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 1938 382 0.84 378 0 1.00
DynamicCompartment 1609 171 0.90 170 208 0.45
Saved checkpoints and run results in '/tmp/tmpxs4krzn6'
|
Standard error | N/A% 0/200 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/200 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
10% 21/200 (max_time) | | Elapsed Time: 0:00:00 ETA: 239 days, 6:01:18
21% 43/200 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:00
32% 64/200 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 81/200 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
51% 102/200 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 124/200 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
71% 142/200 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
80% 160/200 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 177/200 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
97% 195/200 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 200/200 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.test_dynamic_mass.TwoSpeciesTestCase |
test_exponentially_increase... |
tests/test_dynamic_mass.py |
313 |
Pass |
7.459 |
Result type | |
Message | |
Details | |
Standard output | Simulated 5217 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 1001 4217 0.19 4216 0 1.00
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 12436 8436 0.60 8432 0 1.00
DynamicCompartment 8009 4217 0.66 4216 0 1.00
Saved checkpoints and run results in '/tmp/tmpmuzyq1uv'
|
Standard error | N/A% 0/1000 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/1000 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
1% 13/1000 (max_time) | | Elapsed Time: 0:00:00 ETA: 1313 days, 3:43:57
2% 25/1000 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:09
3% 38/1000 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:09
5% 50/1000 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:06
6% 63/1000 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:06
7% 76/1000 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
8% 89/1000 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
10% 101/1000 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
11% 114/1000 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
13% 136/1000 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
14% 149/1000 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:04
16% 164/1000 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:04
17% 177/1000 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:04
18% 189/1000 (max_time) |## | Elapsed Time: 0:00:01 ETA: 0:00:04
20% 202/1000 (max_time) |## | Elapsed Time: 0:00:01 ETA: 0:00:04
21% 215/1000 (max_time) |### | Elapsed Time: 0:00:01 ETA: 0:00:04
22% 227/1000 (max_time) |### | Elapsed Time: 0:00:01 ETA: 0:00:04
24% 240/1000 (max_time) |### | Elapsed Time: 0:00:01 ETA: 0:00:04
25% 253/1000 (max_time) |### | Elapsed Time: 0:00:01 ETA: 0:00:04
26% 266/1000 (max_time) |### | Elapsed Time: 0:00:01 ETA: 0:00:04
27% 278/1000 (max_time) |### | Elapsed Time: 0:00:01 ETA: 0:00:04
29% 291/1000 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:03
30% 303/1000 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:03
31% 316/1000 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:03
32% 329/1000 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:03
34% 341/1000 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:03
35% 354/1000 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:03
36% 367/1000 (max_time) |##### | Elapsed Time: 0:00:02 ETA: 0:00:03
37% 379/1000 (max_time) |##### | Elapsed Time: 0:00:02 ETA: 0:00:03
39% 392/1000 (max_time) |##### | Elapsed Time: 0:00:02 ETA: 0:00:03
40% 405/1000 (max_time) |##### | Elapsed Time: 0:00:02 ETA: 0:00:03
41% 417/1000 (max_time) |##### | Elapsed Time: 0:00:02 ETA: 0:00:03
43% 430/1000 (max_time) |###### | Elapsed Time: 0:00:02 ETA: 0:00:03
44% 443/1000 (max_time) |###### | Elapsed Time: 0:00:02 ETA: 0:00:03
45% 455/1000 (max_time) |###### | Elapsed Time: 0:00:02 ETA: 0:00:03
46% 468/1000 (max_time) |###### | Elapsed Time: 0:00:02 ETA: 0:00:03
48% 481/1000 (max_time) |###### | Elapsed Time: 0:00:02 ETA: 0:00:02
49% 494/1000 (max_time) |###### | Elapsed Time: 0:00:02 ETA: 0:00:02
50% 506/1000 (max_time) |####### | Elapsed Time: 0:00:02 ETA: 0:00:02
51% 519/1000 (max_time) |####### | Elapsed Time: 0:00:02 ETA: 0:00:02
53% 531/1000 (max_time) |####### | Elapsed Time: 0:00:03 ETA: 0:00:02
54% 544/1000 (max_time) |####### | Elapsed Time: 0:00:03 ETA: 0:00:02
56% 568/1000 (max_time) |####### | Elapsed Time: 0:00:03 ETA: 0:00:02
58% 582/1000 (max_time) |######## | Elapsed Time: 0:00:03 ETA: 0:00:02
59% 594/1000 (max_time) |######## | Elapsed Time: 0:00:03 ETA: 0:00:02
60% 607/1000 (max_time) |######## | Elapsed Time: 0:00:03 ETA: 0:00:02
62% 621/1000 (max_time) |######## | Elapsed Time: 0:00:03 ETA: 0:00:02
63% 632/1000 (max_time) |######## | Elapsed Time: 0:00:03 ETA: 0:00:02
64% 645/1000 (max_time) |######### | Elapsed Time: 0:00:03 ETA: 0:00:01
65% 658/1000 (max_time) |######### | Elapsed Time: 0:00:03 ETA: 0:00:01
67% 671/1000 (max_time) |######### | Elapsed Time: 0:00:03 ETA: 0:00:01
68% 683/1000 (max_time) |######### | Elapsed Time: 0:00:03 ETA: 0:00:01
69% 697/1000 (max_time) |######### | Elapsed Time: 0:00:03 ETA: 0:00:01
70% 708/1000 (max_time) |######### | Elapsed Time: 0:00:03 ETA: 0:00:01
72% 721/1000 (max_time) |########## | Elapsed Time: 0:00:04 ETA: 0:00:01
73% 734/1000 (max_time) |########## | Elapsed Time: 0:00:04 ETA: 0:00:01
74% 747/1000 (max_time) |########## | Elapsed Time: 0:00:04 ETA: 0:00:01
75% 759/1000 (max_time) |########## | Elapsed Time: 0:00:04 ETA: 0:00:01
77% 772/1000 (max_time) |########## | Elapsed Time: 0:00:04 ETA: 0:00:01
78% 785/1000 (max_time) |########## | Elapsed Time: 0:00:04 ETA: 0:00:01
79% 798/1000 (max_time) |########### | Elapsed Time: 0:00:04 ETA: 0:00:01
81% 810/1000 (max_time) |########### | Elapsed Time: 0:00:04 ETA: 0:00:01
82% 823/1000 (max_time) |########### | Elapsed Time: 0:00:04 ETA: 0:00:00
83% 835/1000 (max_time) |########### | Elapsed Time: 0:00:04 ETA: 0:00:00
84% 848/1000 (max_time) |########### | Elapsed Time: 0:00:04 ETA: 0:00:00
86% 860/1000 (max_time) |############ | Elapsed Time: 0:00:04 ETA: 0:00:00
87% 873/1000 (max_time) |############ | Elapsed Time: 0:00:04 ETA: 0:00:00
88% 886/1000 (max_time) |############ | Elapsed Time: 0:00:04 ETA: 0:00:00
89% 898/1000 (max_time) |############ | Elapsed Time: 0:00:05 ETA: 0:00:00
91% 911/1000 (max_time) |############ | Elapsed Time: 0:00:05 ETA: 0:00:00
92% 924/1000 (max_time) |############ | Elapsed Time: 0:00:05 ETA: 0:00:00
93% 936/1000 (max_time) |############# | Elapsed Time: 0:00:05 ETA: 0:00:00
94% 949/1000 (max_time) |############# | Elapsed Time: 0:00:05 ETA: 0:00:00
96% 962/1000 (max_time) |############# | Elapsed Time: 0:00:05 ETA: 0:00:00
97% 974/1000 (max_time) |############# | Elapsed Time: 0:00:05 ETA: 0:00:00
98% 987/1000 (max_time) |############# | Elapsed Time: 0:00:05 ETA: 0:00:00
100% 1000/1000 (max_time) |##############| Elapsed Time: 0:00:05 ETA: 00:00:00
100% 1000/1000 (max_time) |##############| Elapsed Time: 0:00:05 Time: 0:00:05
|
|
|
tests.test_dynamic_components.TestDynamicModel |
test_expression_dependency_... |
tests/test_dynamic_componen... |
881 |
Pass |
7.765 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_model_utilities.TestModelUtilities |
test_find_private_species |
tests/test_model_utilities.py |
32 |
Pass |
0.426 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_model_utilities.TestModelUtilities |
test_find_shared_species |
tests/test_model_utilities.py |
52 |
Pass |
0.426 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDynam... |
test_flush_after_reaction |
tests/submodels/test_dynami... |
163 |
Pass |
1.440 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicModel |
test_flush_operations |
tests/test_dynamic_componen... |
734 |
Pass |
0.446 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestInitializedDy... |
test_fold_changes |
tests/test_dynamic_componen... |
571 |
Pass |
0.018 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_get |
tests/test_run_results.py |
98 |
Pass |
0.125 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_get_concentrations |
tests/test_run_results.py |
149 |
Pass |
0.097 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_get_continuous_species |
tests/test_species_populati... |
403 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationUtili... |
test_get_default_args |
tests/testing/test_verify.py |
1089 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_get_dynamic_compartments |
tests/test_multialgorithm_s... |
288 |
Pass |
0.608 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicCompon... |
test_get_dynamic_component |
tests/test_dynamic_componen... |
220 |
Pass |
0.010 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicCompon... |
test_get_dynamic_model_type |
tests/test_dynamic_componen... |
198 |
Pass |
0.011 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_get_masses |
tests/test_run_results.py |
192 |
Pass |
0.092 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_get_metadata |
tests/test_run_results.py |
209 |
Pass |
0.095 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDynam... |
test_get_num_submodels |
tests/submodels/test_dynami... |
66 |
Pass |
0.389 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestWCSimulationConfig |
test_get_num_time_steps |
tests/test_sim_config.py |
232 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_metadata.TestWCSimulationMetadata |
test_get_pathname |
tests/test_metadata.py |
71 |
Pass |
3.804 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_get_population_and_con... |
tests/test_species_populati... |
939 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_get_population_and_con... |
tests/test_species_populati... |
1060 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_get_population_and_dis... |
tests/test_species_populati... |
915 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_get_population_with_bo... |
tests/test_species_populati... |
1005 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_get_population_with_in... |
tests/test_species_populati... |
1151 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_get_population_with_te... |
tests/test_species_populati... |
1123 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_get_properties |
tests/test_run_results.py |
177 |
Pass |
0.092 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_simulation.TestSimulation |
test_get_simulator |
tests/test_simulation.py |
157 |
Pass |
0.456 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_get_species_and_stoich... |
tests/submodels/test_dfba.py |
357 |
Pass |
0.534 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationTestR... |
test_get_species_id |
tests/testing/test_verify.py |
239 |
Pass |
0.296 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_model_utilities.TestModelUtilities |
test_get_species_types |
tests/test_model_utilities.py |
156 |
Pass |
0.424 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestInitialDynami... |
test_get_stop_condition |
tests/test_dynamic_componen... |
136 |
Pass |
0.417 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_get_times |
tests/test_run_results.py |
167 |
Pass |
0.084 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_main.CliTestCase |
test_get_version |
tests/test_main.py |
37 |
Pass |
0.021 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_get_volumes |
tests/test_run_results.py |
181 |
Pass |
0.105 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_history |
tests/test_species_populati... |
565 |
Pass |
0.004 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_history |
tests/test_species_populati... |
1230 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDynam... |
test_identify_enabled_react... |
tests/submodels/test_dynami... |
124 |
Pass |
0.413 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_ignore_model_attribute |
tests/test_sim_config.py |
354 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_independently_solved_m... |
tests/test_multialgorithm_s... |
361 |
Pass |
34.613 |
Result type | |
Message | |
Details | |
Standard output | Simulated 511 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 11 0.00 10 990 0.01
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 1022 2 1.00 0 0 nan
DynamicCompartment 89 11 0.89 10 990 0.01
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran static.xlsx with deterministic_simulation_algorithm in 7.27e-01 (sec)
Simulated 112 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 11 0.00 10 1072 0.01
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 3944 2 1.00 0 0 nan
DynamicCompartment 88 12 0.88 11 1071 0.01
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran static.xlsx with ordinary_differential_equations in 5.54e-01 (sec)
Simulated 910 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 10 0.00 9 891 0.01
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 909 1 1.00 0 0 nan
DynamicCompartment 81 10 0.89 9 891 0.01
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran one_reaction_linear.xlsx with deterministic_simulation_algorithm in 8.79e-01 (sec)
Simulated 911 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 10 0.00 9 9079 0.00
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 16383 1 1.00 0 0 nan
DynamicCompartment 80 11 0.88 10 9078 0.00
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran one_reaction_linear.xlsx with ordinary_differential_equations in 1.36e+00 (sec)
Simulated 12266 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 11 0.00 10 12245 0.00
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 11 12256 0.00 12255 0 1.00
DynamicCompartment 89 11 0.89 10 12245 0.00
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran one_rxn_exponential.xlsx with deterministic_simulation_algorithm in 3.74e+00 (sec)
Simulated 32 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 11 0.00 10 662 0.01
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 651 662 0.50 661 11 0.98
DynamicCompartment 88 12 0.88 11 661 0.02
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran one_rxn_exponential.xlsx with ordinary_differential_equations in 5.41e-01 (sec)
Simulated 1970 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 61 1971 0.03 1969 1849 0.52
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 61 1910 0.03 1909 0 1.00
DynamicCompartment 490 1971 0.20 1969 1849 0.52
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran one_exchange_rxn_compt_growth.xlsx with deterministic_simulation_algorithm in 1.54e+00 (sec)
Simulated 182 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 61 3676 0.02 3674 3676 0.50
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 3554 3615 0.50 3614 61 0.98
DynamicCompartment 488 3678 0.12 3676 3674 0.50
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran one_exchange_rxn_compt_growth.xlsx with ordinary_differential_equations in 1.76e+00 (sec)
Simulated 1600 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 800 801 0.50 800 0 1.00
DynamicStopCondition 7205 2404 0.75 2400 0 1.00
DynamicObservable 800 800 0.50 800 0 1.00
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 1600 1 1.00 0 0 nan
DynamicCompartment 7201 800 0.90 800 0 1.00
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran stop_conditions.xlsx with deterministic_simulation_algorithm in 3.24e+00 (sec)
Simulated 1601 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 800 801 0.50 800 7282 0.10
DynamicStopCondition 7208 2407 0.75 2403 21843 0.10
DynamicObservable 800 801 0.50 801 7281 0.10
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 15361 1 1.00 0 0 nan
DynamicCompartment 7201 801 0.90 801 7281 0.10
Saved checkpoints and run results in '/tmp/tmpq1weibtd/tmphmii6wwu'
ran stop_conditions.xlsx with ordinary_differential_equations in 4.67e+00 (sec)
|
Standard error | N/A% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
22% 22/100 (max_time) |# | Elapsed Time: 0:00:00 ETA: 127 days, 8:45:28
36% 36/100 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 54/100 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 77/100 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
97% 97/100 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 100/100 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
41% 41/100 (max_time) |## | Elapsed Time: 0:00:00 ETA: 85 days, 22:24:38
87% 87/100 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 100/100 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
15% 137/900 (max_time) | | Elapsed Time: 0:00:00 ETA: 1699 days, 23:15:25
32% 296/900 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
49% 444/900 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
65% 592/900 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 775/900 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 900/900 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 57/900 (max_time) | | Elapsed Time: 0:00:00 ETA: 1453 days, 19:04:03
12% 114/900 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
20% 183/900 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
27% 251/900 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:00
33% 297/900 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 365/900 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 433/900 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 490/900 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 547/900 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 616/900 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
76% 684/900 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
79% 718/900 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 775/900 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
93% 844/900 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 900/900 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/20 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/20 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
2% 0/20 (max_time) | | Elapsed Time: 0:00:00 ETA: 30 days, 22:09:12
6% 1/20 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
8% 1/20 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
11% 2/20 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:03
13% 2/20 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
16% 3/20 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
18% 3/20 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
21% 4/20 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
24% 4/20 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:02
26% 5/20 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:02
29% 5/20 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:02
31% 6/20 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
34% 6/20 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
36% 7/20 (max_time) |###### | Elapsed Time: 0:00:01 ETA: 0:00:01
39% 7/20 (max_time) |####### | Elapsed Time: 0:00:01 ETA: 0:00:01
41% 8/20 (max_time) |####### | Elapsed Time: 0:00:01 ETA: 0:00:01
44% 8/20 (max_time) |####### | Elapsed Time: 0:00:01 ETA: 0:00:01
46% 9/20 (max_time) |######## | Elapsed Time: 0:00:01 ETA: 0:00:01
49% 9/20 (max_time) |######## | Elapsed Time: 0:00:01 ETA: 0:00:01
51% 10/20 (max_time) |######### | Elapsed Time: 0:00:01 ETA: 0:00:01
54% 10/20 (max_time) |######### | Elapsed Time: 0:00:01 ETA: 0:00:01
56% 11/20 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:01
59% 11/20 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:01
62% 12/20 (max_time) |########### | Elapsed Time: 0:00:01 ETA: 0:00:01
64% 12/20 (max_time) |########### | Elapsed Time: 0:00:01 ETA: 0:00:01
67% 13/20 (max_time) |############ | Elapsed Time: 0:00:02 ETA: 0:00:00
69% 13/20 (max_time) |############ | Elapsed Time: 0:00:02 ETA: 0:00:00
72% 14/20 (max_time) |############ | Elapsed Time: 0:00:02 ETA: 0:00:00
74% 14/20 (max_time) |############# | Elapsed Time: 0:00:02 ETA: 0:00:00
77% 15/20 (max_time) |############# | Elapsed Time: 0:00:02 ETA: 0:00:00
79% 15/20 (max_time) |############## | Elapsed Time: 0:00:02 ETA: 0:00:00
81% 16/20 (max_time) |############## | Elapsed Time: 0:00:02 ETA: 0:00:00
83% 16/20 (max_time) |############### | Elapsed Time: 0:00:02 ETA: 0:00:00
85% 17/20 (max_time) |############### | Elapsed Time: 0:00:02 ETA: 0:00:00
87% 17/20 (max_time) |############### | Elapsed Time: 0:00:02 ETA: 0:00:00
89% 17/20 (max_time) |################ | Elapsed Time: 0:00:02 ETA: 0:00:00
91% 18/20 (max_time) |################ | Elapsed Time: 0:00:02 ETA: 0:00:00
92% 18/20 (max_time) |################ | Elapsed Time: 0:00:03 ETA: 0:00:00
93% 18/20 (max_time) |################ | Elapsed Time: 0:00:03 ETA: 0:00:00
94% 18/20 (max_time) |################# | Elapsed Time: 0:00:03 ETA: 0:00:00
96% 19/20 (max_time) |################# | Elapsed Time: 0:00:03 ETA: 0:00:00
97% 19/20 (max_time) |################# | Elapsed Time: 0:00:03 ETA: 0:00:00
98% 19/20 (max_time) |################# | Elapsed Time: 0:00:03 ETA: 0:00:00
100% 20/20 (max_time) |##################| Elapsed Time: 0:00:03 Time: 0:00:03
N/A% 0/20 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/20 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
60% 12/20 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 12 days, 20:24:56
100% 20/20 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/120 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/120 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
19% 22/120 (max_time) |# | Elapsed Time: 0:00:00 ETA: 158 days, 5:46:08
32% 39/120 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
43% 51/120 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
51% 62/120 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
59% 71/120 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
65% 78/120 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 85/120 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
75% 91/120 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
79% 95/120 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
82% 98/120 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 103/120 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
89% 107/120 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 110/120 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
94% 113/120 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
97% 116/120 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 120/120 (max_time) |################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/120 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/120 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
4% 5/120 (max_time) | | Elapsed Time: 0:00:00 ETA: 195 days, 18:31:00
9% 11/120 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
14% 17/120 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
19% 23/120 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 29/120 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
29% 35/120 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 42/120 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
40% 48/120 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
45% 54/120 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 60/120 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
55% 66/120 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 72/120 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
65% 78/120 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 84/120 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
75% 90/120 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
80% 96/120 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
85% 102/120 (max_time) |############# | Elapsed Time: 0:00:01 ETA: 0:00:00
89% 107/120 (max_time) |############## | Elapsed Time: 0:00:01 ETA: 0:00:00
94% 113/120 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
97% 117/120 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 120/120 (max_time) |################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
2% 23/900 (max_time) | | Elapsed Time: 0:00:00 ETA: 1495 days, 0:44:59
6% 57/900 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
8% 80/900 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
12% 114/900 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
16% 148/900 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
20% 182/900 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
22% 205/900 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
26% 239/900 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 273/900 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 296/900 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 319/900 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
38% 342/900 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
40% 365/900 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
44% 399/900 (max_time) |####### | Elapsed Time: 0:00:01 ETA: 0:00:01
48% 433/900 (max_time) |####### | Elapsed Time: 0:00:01 ETA: 0:00:01
50% 456/900 (max_time) |######## | Elapsed Time: 0:00:01 ETA: 0:00:01
53% 478/900 (max_time) |######## | Elapsed Time: 0:00:01 ETA: 0:00:01
55% 501/900 (max_time) |######## | Elapsed Time: 0:00:01 ETA: 0:00:01
58% 524/900 (max_time) |######### | Elapsed Time: 0:00:01 ETA: 0:00:00
60% 547/900 (max_time) |######### | Elapsed Time: 0:00:01 ETA: 0:00:00
64% 581/900 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:00
68% 615/900 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:00
72% 649/900 (max_time) |########### | Elapsed Time: 0:00:01 ETA: 0:00:00
76% 684/900 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
78% 706/900 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
81% 729/900 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
83% 752/900 (max_time) |############# | Elapsed Time: 0:00:01 ETA: 0:00:00
86% 775/900 (max_time) |############# | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 900/900 (max_time) |################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/900 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
1% 12/900 (max_time) | | Elapsed Time: 0:00:00 ETA: 1319 days, 3:40:00
3% 35/900 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:06
6% 57/900 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:06
8% 80/900 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
11% 103/900 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
14% 126/900 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:03
16% 149/900 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:03
19% 171/900 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:03
21% 194/900 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:03
24% 217/900 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
26% 240/900 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:02
29% 263/900 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:02
31% 285/900 (max_time) |##### | Elapsed Time: 0:00:01 ETA: 0:00:02
34% 308/900 (max_time) |##### | Elapsed Time: 0:00:01 ETA: 0:00:02
36% 331/900 (max_time) |##### | Elapsed Time: 0:00:01 ETA: 0:00:02
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|
|
|
tests.testing.test_verify.TestVerificationSuite |
test_init |
tests/testing/test_verify.py |
667 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_metadata.TestWCSimulationMetadata |
test_init |
tests/test_metadata.py |
44 |
Pass |
3.924 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_init |
tests/test_multialgorithm_s... |
96 |
Pass |
0.533 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_init |
tests/test_species_populati... |
311 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestSpeciesPopSi... |
test_init |
tests/test_species_populati... |
1309 |
Pass |
0.014 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_initialize_components |
tests/test_multialgorithm_s... |
221 |
Pass |
0.519 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_nrm.TestNrmSubmodel |
test_initialize_execution_t... |
tests/submodels/test_nrm.py |
120 |
Pass |
0.573 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_initialize_infrastructure |
tests/test_multialgorithm_s... |
226 |
Pass |
1.231 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestInitializedDy... |
test_initialize_mass_and_de... |
tests/test_dynamic_componen... |
529 |
Pass |
0.039 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_initialize_neg_species... |
tests/submodels/test_dfba.py |
409 |
Pass |
1.435 |
Result type | |
Message | |
Details | |
Standard output |
name lower upper
bound bound
neg_pop_constr__m3[c] None None
--- terms ---
-1.0 ex_m3 continuous
-1.0 biomass_reaction continuous
neg_pop_constr__m2[c] None None
--- terms ---
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
neg_pop_constr__m1[c] None None
--- terms ---
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
|
Standard error | |
|
|
tests.submodels.test_nrm.TestNrmSubmodel |
test_initialize_propensities |
tests/submodels/test_nrm.py |
115 |
Pass |
0.495 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestCaseVerifier |
test_init_optional_args |
tests/testing/test_verify.py |
560 |
Pass |
3.344 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_init_species_pop_from_... |
tests/test_multialgorithm_s... |
160 |
Pass |
0.596 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestInitializedDy... |
test_init_volume_and_eval |
tests/test_dynamic_componen... |
577 |
Pass |
0.022 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_invalid_algorithm_para... |
tests/test_sim_config.py |
527 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestSpeciesPopSi... |
test_invalid_event_types |
tests/test_species_populati... |
1313 |
Pass |
0.014 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_invalid_kisao_id |
tests/test_sim_config.py |
439 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_invalid_random_seed_float |
tests/test_sim_config.py |
479 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_invalid_random_seed_st... |
tests/test_sim_config.py |
457 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_invalid_set_value |
tests/test_sim_config.py |
573 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_invalid_weights |
tests/test_species_populati... |
638 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicModel |
test_large_obtain_dependencies |
tests/test_dynamic_componen... |
700 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | requires about 5 GB RAM and takes 0.5 hr. |
Details | tests/test_dynamic_components.py:700: requires about 5 GB RAM and takes 0.5 hr. |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_make_local_species_pop... |
tests/test_multialgorithm_s... |
173 |
Pass |
0.616 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_make_test_lsp |
tests/test_species_populati... |
654 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_make_models.TestMakeModels |
test_make_test_model |
tests/testing/test_make_mod... |
39 |
Pass |
15.675 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_make_models.TestMakeModels |
test_make_test_model_init_vols |
tests/testing/test_make_mod... |
145 |
Pass |
0.514 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_mass |
tests/test_species_populati... |
616 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_message_types.Test |
test_message_types |
tests/test_message_types.py |
18 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_main.CliTestCase |
test_migration_handlers |
tests/test_main.py |
52 |
Pass |
0.193 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_modeled_continuously |
tests/test_species_populati... |
799 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_modeled_discretely |
tests/test_species_populati... |
792 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_molecular_weights_for_... |
tests/test_multialgorithm_s... |
115 |
Pass |
0.631 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.utils.test_time_ordered_list.TestDoublyLi... |
test_node |
tests/utils/test_time_order... |
20 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_model_utilities.TestModelUtilities |
test_non_neg_normal_sample |
tests/test_model_utilities.py |
168 |
Pass |
0.453 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_not_unique_algorithm_p... |
tests/test_sim_config.py |
501 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_data_descriptions |
tests/test_sim_config.py |
774 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_data_generators |
tests/test_sim_config.py |
748 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_functional_range |
tests/test_sim_config.py |
627 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_initial_time |
tests/test_sim_config.py |
412 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_model |
tests/test_sim_config.py |
347 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_multiple_vector_ranges |
tests/test_sim_config.py |
859 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_non_change_attributes |
tests/test_sim_config.py |
376 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_non_linear_uniform_... |
tests/test_sim_config.py |
890 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_non_repeated_task |
tests/test_sim_config.py |
656 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_number_of_points |
tests/test_sim_config.py |
826 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_outputs |
tests/test_sim_config.py |
800 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_output_start_time |
tests/test_sim_config.py |
425 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_range |
tests/test_sim_config.py |
600 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_simulations |
tests/test_sim_config.py |
401 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_subtasks |
tests/test_sim_config.py |
680 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlValidation |
test_no_task_change |
tests/test_sim_config.py |
549 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_simulation.TestSimulation |
test_object_memory_use |
tests/test_simulation.py |
102 |
Pass |
72.271 |
Result type | |
Message | |
Details | |
Standard output | Simulated 226 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 3 0.00 2 221 0.01
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 0 nan
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 226 1 1.00 0 0 nan
DynamicCompartment 25 3 0.89 2 221 0.01
Saved checkpoints and run results in '/tmp/tmpwnroesb7/tmpt5e4w1a8'
|
Standard error | N/A% 0/2 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/2 (max_time) | | Elapsed Time: 0:00:12 ETA: --:--:--
26% 0/2 (max_time) |##### | Elapsed Time: 0:00:24 ETA: 0:00:33
52% 1/2 (max_time) |########## | Elapsed Time: 0:00:36 ETA: 0:00:22
71% 1/2 (max_time) |############## | Elapsed Time: 0:00:48 ETA: 0:00:16
85% 1/2 (max_time) |################# | Elapsed Time: 0:01:00 ETA: 0:00:12
100% 2/2 (max_time) |####################| Elapsed Time: 0:01:00 Time: 0:01:00
|
|
|
tests.test_dynamic_components.TestDynamicModel |
test_obtain_dependencies |
tests/test_dynamic_componen... |
676 |
Pass |
0.150 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_ode_submodel_init |
tests/submodels/test_odes.py |
53 |
Pass |
0.168 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestODETestIterators |
test_ode_test_iterator |
tests/testing/test_verify.py |
42 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_one_reaction_constant_... |
tests/test_multialgorithm_s... |
366 |
Pass |
0.079 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_optional_species_argument |
tests/test_species_populati... |
347 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestAccessSpecie... |
test_other_exceptions |
tests/test_species_populati... |
111 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | AccessSpeciesPopulations isn't being used |
Details | tests/test_species_populations.py:111: AccessSpeciesPopulations isn't being used |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestRunSSA... |
test_performance |
tests/test_multialgorithm_s... |
558 |
Pass |
79.210 |
Result type | |
Message | |
Details | |
Standard output | Performance test of Stochastic Simulation Algorithm submodel simulation:
2 reactions per submodel; end simulation time: 100
Profile for 2 instances of Stochastic Simulation Algorithm:
Sun Jan 3 22:17:25 2021 /tmp/tmpbxjca9jl/profile_out_2.out
511603 function calls (509113 primitive calls) in 0.883 seconds
Ordered by: cumulative time
List reduced from 588 to 15 due to restriction <15>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 0.883 0.883 {built-in method builtins.exec}
1 0.000 0.000 0.883 0.883 simulator.py:539(simulate)
1 0.009 0.009 0.883 0.883 simulator.py:593(_simulate)
629 0.002 0.000 0.734 0.001 simulation_object.py:233(__handle_event_list)
618 0.003 0.000 0.695 0.001 ssa.py:295(handle_ExecuteSsaReaction_msg)
618 0.001 0.000 0.575 0.001 ssa.py:246(schedule_next_events)
618 0.006 0.000 0.573 0.001 ssa.py:212(schedule_next_SSA_reaction)
618 0.001 0.000 0.510 0.001 ssa.py:171(get_reaction_propensities)
618 0.009 0.000 0.509 0.001 ssa.py:136(determine_reaction_propensities)
618 0.008 0.000 0.333 0.001 dynamic_submodel.py:135(calc_reaction_rates)
1236 0.009 0.000 0.274 0.000 dynamic_submodel.py:113(calc_reaction_rate)
2582/1346 0.040 0.000 0.267 0.000 dynamic_components.py:261(eval)
662 0.002 0.000 0.160 0.000 dynamic_components.py:584(mass)
618 0.001 0.000 0.154 0.000 dynamic_components.py:619(eval)
794 0.003 0.000 0.135 0.000 dynamic_components.py:530(_is_abstract)
Profile for 8 instances of Stochastic Simulation Algorithm:
Sun Jan 3 22:17:34 2021 /tmp/tmpbxjca9jl/profile_out_8.out
2291680 function calls (2280758 primitive calls) in 3.778 seconds
Ordered by: cumulative time
List reduced from 588 to 15 due to restriction <15>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 3.781 3.781 {built-in method builtins.exec}
1 0.000 0.000 3.780 3.780 simulator.py:539(simulate)
1 0.041 0.041 3.780 3.780 simulator.py:593(_simulate)
2737 0.010 0.000 3.514 0.001 simulation_object.py:233(__handle_event_list)
2726 0.016 0.000 3.340 0.001 ssa.py:295(handle_ExecuteSsaReaction_msg)
2726 0.005 0.000 2.713 0.001 ssa.py:246(schedule_next_events)
2726 0.029 0.000 2.707 0.001 ssa.py:212(schedule_next_SSA_reaction)
2726 0.006 0.000 2.414 0.001 ssa.py:171(get_reaction_propensities)
2726 0.043 0.000 2.408 0.001 ssa.py:136(determine_reaction_propensities)
2726 0.042 0.000 1.592 0.001 dynamic_submodel.py:135(calc_reaction_rates)
5452 0.047 0.000 1.314 0.000 dynamic_submodel.py:113(calc_reaction_rate)
11344/5892 0.195 0.000 1.275 0.000 dynamic_components.py:261(eval)
2902 0.008 0.000 0.765 0.000 dynamic_components.py:584(mass)
2726 0.004 0.000 0.738 0.000 dynamic_components.py:619(eval)
3430 0.012 0.000 0.604 0.000 dynamic_components.py:530(_is_abstract)
Profile for 32 instances of Stochastic Simulation Algorithm:
Sun Jan 3 22:18:11 2021 /tmp/tmpbxjca9jl/profile_out_32.out
10064956 function calls (10021994 primitive calls) in 17.727 seconds
Ordered by: cumulative time
List reduced from 588 to 15 due to restriction <15>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 17.737 17.737 {built-in method builtins.exec}
1 0.000 0.000 17.737 17.737 simulator.py:539(simulate)
1 0.189 0.189 17.737 17.737 simulator.py:593(_simulate)
10747 0.043 0.000 17.016 0.002 simulation_object.py:233(__handle_event_list)
10736 0.076 0.000 16.347 0.002 ssa.py:295(handle_ExecuteSsaReaction_msg)
10736 0.025 0.000 12.611 0.001 ssa.py:246(schedule_next_events)
10736 0.130 0.000 12.586 0.001 ssa.py:212(schedule_next_SSA_reaction)
10736 0.029 0.000 11.252 0.001 ssa.py:171(get_reaction_propensities)
10736 0.194 0.000 11.223 0.001 ssa.py:136(determine_reaction_propensities)
10736 0.192 0.000 7.603 0.001 dynamic_submodel.py:135(calc_reaction_rates)
21472 0.211 0.000 6.384 0.000 dynamic_submodel.py:113(calc_reaction_rate)
44704/23232 0.872 0.000 6.206 0.000 dynamic_components.py:261(eval)
11440 0.040 0.000 3.924 0.000 dynamic_components.py:584(mass)
10736 0.019 0.000 3.784 0.000 dynamic_components.py:619(eval)
10736 0.051 0.000 2.957 0.000 ssa.py:260(execute_SSA_reaction)
Performance summary, written to /root/project/tests/perf_results/wc_sim_performance_log.txt:
Performance summary for Stochastic Simulation Algorithm on 2021-01-03:
# SSA submodels # events run time (s) reactions/s
2 634 0.657 965.108
8 2757 2.901 950.418
32 10475 14.277 733.680
Performance test of Next Reaction Method submodel simulation:
2 reactions per submodel; end simulation time: 100
Profile for 2 instances of Next Reaction Method:
Sun Jan 3 22:18:13 2021 /tmp/tmpbxjca9jl/profile_out_2.out
387287 function calls (385955 primitive calls) in 0.676 seconds
Ordered by: cumulative time
List reduced from 535 to 15 due to restriction <15>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 0.677 0.677 {built-in method builtins.exec}
1 0.000 0.000 0.677 0.677 simulator.py:539(simulate)
1 0.009 0.009 0.676 0.676 simulator.py:593(_simulate)
668 0.002 0.000 0.515 0.001 simulation_object.py:233(__handle_event_list)
657 0.002 0.000 0.474 0.001 nrm.py:299(handle_ExecuteAndScheduleNrmReaction_msg)
657 0.012 0.000 0.385 0.001 nrm.py:213(schedule_next_reaction)
1314 0.011 0.000 0.334 0.000 dynamic_submodel.py:113(calc_reaction_rate)
2738/1424 0.041 0.000 0.274 0.000 dynamic_components.py:261(eval)
701 0.002 0.000 0.166 0.000 dynamic_components.py:584(mass)
657 0.001 0.000 0.159 0.000 dynamic_components.py:619(eval)
833 0.003 0.000 0.139 0.000 dynamic_components.py:530(_is_abstract)
1 0.000 0.000 0.136 0.136 simulator.py:410(init_metadata_collection)
833 0.002 0.000 0.135 0.000 ontology.py:219(__getitem__)
1 0.000 0.000 0.135 0.135 git.py:145(get_repo_metadata)
1666 0.008 0.000 0.132 0.000 meta.py:68(newfunc)
Profile for 8 instances of Next Reaction Method:
Sun Jan 3 22:18:18 2021 /tmp/tmpbxjca9jl/profile_out_8.out
1623132 function calls (1617772 primitive calls) in 2.538 seconds
Ordered by: cumulative time
List reduced from 534 to 15 due to restriction <15>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 2.540 2.540 {built-in method builtins.exec}
1 0.000 0.000 2.540 2.540 simulator.py:539(simulate)
1 0.039 0.039 2.540 2.540 simulator.py:593(_simulate)
2682 0.009 0.000 2.266 0.001 simulation_object.py:233(__handle_event_list)
2671 0.009 0.000 2.089 0.001 nrm.py:299(handle_ExecuteAndScheduleNrmReaction_msg)
2671 0.052 0.000 1.656 0.001 nrm.py:213(schedule_next_reaction)
5342 0.047 0.000 1.437 0.000 dynamic_submodel.py:113(calc_reaction_rate)
11124/5782 0.180 0.000 1.182 0.000 dynamic_components.py:261(eval)
2847 0.008 0.000 0.717 0.000 dynamic_components.py:584(mass)
2671 0.004 0.000 0.685 0.000 dynamic_components.py:619(eval)
3375 0.011 0.000 0.582 0.000 dynamic_components.py:530(_is_abstract)
3375 0.010 0.000 0.562 0.000 ontology.py:219(__getitem__)
6750 0.034 0.000 0.552 0.000 meta.py:68(newfunc)
2671 0.006 0.000 0.424 0.000 nrm.py:289(execute_nrm_reaction)
2671 0.028 0.000 0.418 0.000 dynamic_submodel.py:196(execute_reaction)
Profile for 32 instances of Next Reaction Method:
Sun Jan 3 22:18:43 2021 /tmp/tmpbxjca9jl/profile_out_32.out
7505648 function calls (7484298 primitive calls) in 10.911 seconds
Ordered by: cumulative time
List reduced from 534 to 15 due to restriction <15>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 10.920 10.920 {built-in method builtins.exec}
1 0.000 0.000 10.920 10.920 simulator.py:539(simulate)
1 0.155 0.155 10.920 10.920 simulator.py:593(_simulate)
10677 0.035 0.000 10.307 0.001 simulation_object.py:233(__handle_event_list)
10666 0.036 0.000 9.743 0.001 nrm.py:299(handle_ExecuteAndScheduleNrmReaction_msg)
10666 0.209 0.000 7.153 0.001 nrm.py:213(schedule_next_reaction)
21332 0.196 0.000 6.270 0.000 dynamic_submodel.py:113(calc_reaction_rate)
44424/23092 0.740 0.000 5.217 0.000 dynamic_components.py:261(eval)
11370 0.031 0.000 3.322 0.000 dynamic_components.py:584(mass)
10666 0.015 0.000 3.196 0.000 dynamic_components.py:619(eval)
10666 0.025 0.000 2.554 0.000 nrm.py:289(execute_nrm_reaction)
10666 0.117 0.000 2.530 0.000 dynamic_submodel.py:196(execute_reaction)
13482 0.043 0.000 2.280 0.000 dynamic_components.py:530(_is_abstract)
13482 0.040 0.000 2.204 0.000 ontology.py:219(__getitem__)
26964 0.134 0.000 2.164 0.000 meta.py:68(newfunc)
Performance summary, written to /root/project/tests/perf_results/wc_sim_performance_log.txt:
Performance summary for Next Reaction Method on 2021-01-03:
# NRM submodels # events run time (s) reactions/s
2 710 0.511 1389.200
8 2621 1.822 1438.491
32 10716 9.008 1189.660
|
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_performance |
tests/test_run_results.py |
283 |
Pass |
2.191 |
Result type | |
Message | |
Details | |
Standard output |
mean time of 5 runs of 'RunResults(results_dir)': 0.25 (s)
mean time of 20 runs of '_load_hdf_file()': 0.036 (s)
|
Standard error | |
|
|
tests.test_run_results.TestProfileRunResults |
test_performance_profile |
tests/test_run_results.py |
385 |
Pass |
6.112 |
Result type | |
Message | |
Details | |
Standard output |
# species: 1000
# checkpoints: 300
Count Event type (Object type - object name - event type)
300 MultialgorithmicCheckpointingSimObj - CHECKPOINTING_SIM_OBJ - NextEvent
280 SsaSubmodel - submodel_1 - ExecuteSsaReaction
Profile for RunResults() of 1000 species and 300 checkpoints
Sun Jan 3 22:18:58 2021 /tmp/tmp6np9n0u_/tmprnw1czh8/profile.out
602208 function calls (593539 primitive calls) in 1.026 seconds
Ordered by: cumulative time
List reduced from 1062 to 20 due to restriction <20>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 1.026 1.026 {built-in method builtins.exec}
1 0.000 0.000 1.026 1.026 <string>:1(<module>)
1 0.000 0.000 1.026 1.026 /root/project/wc_sim/run_results.py:61(__init__)
1 0.018 0.018 0.898 0.898 /root/project/wc_sim/run_results.py:337(convert_checkpoints)
1202 0.007 0.000 0.460 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/indexing.py:199(__setitem__)
1205/1202 0.031 0.000 0.321 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/indexing.py:313(_setitem_with_indexer)
1500 0.282 0.000 0.283 0.000 /root/project/wc_sim/run_results.py:494(add)
1202 0.002 0.000 0.221 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/internals/managers.py:559(setitem)
1202 0.009 0.000 0.219 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/internals/managers.py:353(apply)
1202 0.003 0.000 0.128 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/indexing.py:168(_get_setitem_indexer)
1200 0.007 0.000 0.118 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/indexing.py:247(_convert_tuple)
1203/1202 0.011 0.000 0.113 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/internals/blocks.py:840(setitem)
2402 0.009 0.000 0.108 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/indexing.py:1205(_convert_to_indexer)
301 0.003 0.000 0.103 0.000 /usr/local/lib/python3.7/site-packages/de_sim/checkpoint.py:116(get_checkpoint)
1218 0.005 0.000 0.089 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/internals/managers.py:126(__init__)
303 0.083 0.000 0.083 0.000 {built-in method _pickle.load}
7 0.000 0.000 0.064 0.009 /usr/local/lib/python3.7/site-packages/pandas/core/generic.py:2427(to_hdf)
7 0.000 0.000 0.064 0.009 /usr/local/lib/python3.7/site-packages/pandas/io/pytables.py:256(to_hdf)
1271 0.004 0.000 0.057 0.000 /usr/local/lib/python3.7/site-packages/pandas/core/internals/blocks.py:3258(make_block)
1 0.000 0.000 0.056 0.056 /root/project/wc_sim/run_results.py:134(_load_hdf_file)
|
Standard error | |
|
|
tests.test_sim_config.TestPerturbation |
test_perturbation |
tests/test_sim_config.py |
239 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestCaseVerifier |
test_plot_model_verification |
tests/testing/test_verify.py |
646 |
Pass |
24.306 |
Result type | |
Message | |
Details | |
Standard output | starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
|
Standard error | N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 68 days, 15:03:20
17% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:00
36% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 23/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
58% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
87% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 63 days, 21:05:55
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 28/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
81% 40/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 46/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 68 days, 19:30:31
16% 8/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 30/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 44/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 63 days, 5:52:11
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
38% 19/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
45% 22/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
55% 27/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
73% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
82% 41/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
91% 45/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 74 days, 15:27:39
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 23/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
55% 27/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
74% 37/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
97% 48/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 63 days, 4:03:20
16% 8/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 22/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
65% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
79% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
89% 44/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 65 days, 7:20:53
16% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 23/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
63% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
79% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 44/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
97% 48/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 67 days, 12:40:45
16% 8/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
25% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
33% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 23/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
55% 27/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
63% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
95% 47/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 66 days, 5:37:57
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 20/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
49% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
57% 28/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
79% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 44/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
9% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 68 days, 13:04:16
18% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
27% 13/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
89% 44/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 65 days, 17:52:42
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
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|
tests.test_species_populations.TestLocalSpecies... |
test_populations_to_concent... |
tests/test_species_populati... |
520 |
Pass |
0.469 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_populations_to_concent... |
tests/test_species_populati... |
535 |
Pass |
0.466 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestAccessSpecie... |
test_population_changes |
tests/test_species_populati... |
120 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | AccessSpeciesPopulations isn't being used |
Details | tests/test_species_populations.py:120: AccessSpeciesPopulations isn't being used |
Standard output | |
Standard error | |
|
|
tests.submodels.test_nrm.TestNrmSubmodel |
test_prepare |
tests/submodels/test_nrm.py |
42 |
Pass |
0.476 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_prepare |
tests/test_multialgorithm_s... |
209 |
Pass |
0.826 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_prepare_computed_compo... |
tests/test_run_results.py |
121 |
Pass |
0.082 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_prepare_dynamic_compar... |
tests/test_multialgorithm_s... |
151 |
Pass |
0.643 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_prepare_skipped_submodels |
tests/test_multialgorithm_s... |
101 |
Pass |
0.512 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestResultsComparator |
test_prepare_tolerances |
tests/testing/test_verify.py |
524 |
Pass |
5.839 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_nrm.TestNrmSubmodel |
test_propensities_eq_to_0 |
tests/submodels/test_nrm.py |
134 |
Pass |
0.870 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_simulation.TestSimulation |
test_provide_event_counts |
tests/test_simulation.py |
165 |
Pass |
0.410 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.on_ROSS.test_try_c_and_python.TestTryCand... |
test_python_call_c |
tests/on_ROSS/test_try_c_an... |
32 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | skip until dependencies work on Circle/Docker |
Details | tests/on_ROSS/test_try_c_and_python.py:32: skip until dependencies work on Circle/Docker |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestResultsComparator |
test_quantify_stoch_diff |
tests/testing/test_verify.py |
508 |
Pass |
5.767 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDsaSu... |
test_rate_eq_0 |
tests/submodels/test_dynami... |
272 |
Pass |
0.424 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_main.CliTestCase |
test_raw_cli |
tests/test_main.py |
25 |
Pass |
0.019 |
Result type | |
Message | |
Details | |
Standard output | usage: wc-sim [-h] [-d] [-q] [-v]
{migrate-data,do-configured-migration,make-data-schema-migration-config-file,sim}
...
Whole-cell model simulator
optional arguments:
-h, --help show this help message and exit
-d, --debug full application debug mode
-q, --quiet suppress all console output
-v, --version show program's version number and exit
sub-commands:
{migrate-data,do-configured-migration,make-data-schema-migration-config-file,sim}
migrate-data Migrate specified data file(s)
do-configured-migration
Migrate data file(s) as configured in a data-schema
migration configuration file
make-data-schema-migration-config-file
Create a data-schema migration configuration file
sim Simulate a wc-lang model
|
Standard error | |
|
|
tests.utils.test_time_ordered_list.TestLinearIn... |
test_read |
tests/utils/test_time_order... |
224 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationTestR... |
test_read_expected_predictions |
tests/testing/test_verify.py |
138 |
Pass |
0.015 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_read_into_array |
tests/test_species_populati... |
560 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationTestR... |
test_read_model |
tests/testing/test_verify.py |
174 |
Pass |
10.344 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_read_one |
tests/test_species_populati... |
356 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationTestR... |
test_read_settings |
tests/testing/test_verify.py |
115 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_simulation.TestSimulation |
test_reseed |
tests/test_simulation.py |
118 |
Pass |
4.768 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestResultsComparator |
test_results_comparator_con... |
tests/testing/test_verify.py |
380 |
Pass |
5.483 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestResultsComparator |
test_results_comparator_dis... |
tests/testing/test_verify.py |
427 |
Pass |
7.032 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestResultsComparator |
test_results_comparator_dyn... |
tests/testing/test_verify.py |
407 |
Pass |
6.086 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_right_hand_side |
tests/submodels/test_odes.py |
97 |
Pass |
0.085 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationSuite |
test_run |
tests/testing/test_verify.py |
827 |
Pass |
98.344 |
Result type | |
Message | |
Details | |
Standard output |
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: min
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
R14_forward 1e+03
R03_backward 1e+03
R02_forward 1e+03
R04_backward 1e+03
R19_backward 1e+03
R21_backward 1e+03
R20_backward 1e+03
objective 0
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: min
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
R14_forward 1e+03
R03_backward 1e+03
R02_forward 1e+03
R04_backward 1e+03
R19_backward 1e+03
R21_backward 1e+03
R20_backward 1e+03
objective 0
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 2.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: max
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00001
starting run 2 of 5 of model test_case_00001
starting run 4 of 5 of model test_case_00001
starting run 1 of 5 of model test_case_00007_multialgorithmic
starting run 2 of 5 of model test_case_00007_multialgorithmic
starting run 4 of 5 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: min
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
R14_forward 1e+03
R03_backward 1e+03
R02_forward 1e+03
R04_backward 1e+03
R19_backward 1e+03
R21_backward 1e+03
R20_backward 1e+03
objective 0
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 6.02E+26
R15 continuous 0.00E+00 6.02E+26
R12 continuous 0.00E+00 6.02E+26
R07 continuous 0.00E+00 6.02E+26
R13 continuous 0.00E+00 6.02E+26
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 6.02E+26
R05 continuous 0.00E+00 6.02E+26
R10 continuous 0.00E+00 6.02E+26
R06 continuous 0.00E+00 6.02E+26
R09 continuous 0.00E+00 6.02E+26
R08 continuous 0.00E+00 6.02E+26
R11 continuous 0.00E+00 6.02E+26
R18 continuous 0.00E+00 6.02E+26
R26 continuous 0.00E+00 6.02E+26
R25 continuous 0.00E+00 6.02E+26
R24 continuous 0.00E+00 6.02E+26
R22 continuous 0.00E+00 6.02E+26
R14_forward continuous 0.00E+00 6.02E+26
R14_backward continuous 0.00E+00 6.02E+26
R03_forward continuous 0.00E+00 6.02E+26
R03_backward continuous 0.00E+00 6.02E+26
R02_forward continuous 0.00E+00 6.02E+26
R02_backward continuous 0.00E+00 6.02E+26
R04_forward continuous 0.00E+00 6.02E+26
R04_backward continuous 0.00E+00 6.02E+26
R19_forward continuous 0.00E+00 6.02E+26
R19_backward continuous 0.00E+00 6.02E+26
R23_forward continuous 0.00E+00 6.02E+26
R23_backward continuous 0.00E+00 6.02E+26
R21_forward continuous 0.00E+00 6.02E+26
R21_backward continuous 0.00E+00 6.02E+26
R20_forward continuous 0.00E+00 6.02E+26
R20_backward continuous 0.00E+00 6.02E+26
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: min
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
0 non-zero reaction fluxes
objective 0
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 6.02E+26
R15 continuous 0.00E+00 6.02E+26
R12 continuous 0.00E+00 6.02E+26
R07 continuous 0.00E+00 6.02E+26
R13 continuous 0.00E+00 6.02E+26
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 6.02E+26
R05 continuous 0.00E+00 6.02E+26
R10 continuous 0.00E+00 6.02E+26
R06 continuous 0.00E+00 6.02E+26
R09 continuous 0.00E+00 6.02E+26
R08 continuous 0.00E+00 6.02E+26
R11 continuous 0.00E+00 6.02E+26
R18 continuous 0.00E+00 6.02E+26
R26 continuous 0.00E+00 6.02E+26
R25 continuous 0.00E+00 6.02E+26
R24 continuous 0.00E+00 6.02E+26
R22 continuous 0.00E+00 6.02E+26
R14_forward continuous 0.00E+00 6.02E+26
R14_backward continuous 0.00E+00 6.02E+26
R03_forward continuous 0.00E+00 6.02E+26
R03_backward continuous 0.00E+00 6.02E+26
R02_forward continuous 0.00E+00 6.02E+26
R02_backward continuous 0.00E+00 6.02E+26
R04_forward continuous 0.00E+00 6.02E+26
R04_backward continuous 0.00E+00 6.02E+26
R19_forward continuous 0.00E+00 6.02E+26
R19_backward continuous 0.00E+00 6.02E+26
R23_forward continuous 0.00E+00 6.02E+26
R23_backward continuous 0.00E+00 6.02E+26
R21_forward continuous 0.00E+00 6.02E+26
R21_backward continuous 0.00E+00 6.02E+26
R20_forward continuous 0.00E+00 6.02E+26
R20_backward continuous 0.00E+00 6.02E+26
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: max
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
16 non-zero reaction fluxes
R16 1
R12 1
R07 1
R01 1
R17 1
R05 1
R06 1
R08 1
R18 1
R26 1
R22 1
R03_forward 1
R04_forward 1
R23_forward 1
EX_X 1
EX_Y 1
objective 1
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: max
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
21 non-zero reaction fluxes
R16 1
R12 1
R07 1
R01 1
R17 1
R05 1
R06 1
R08 1
R18 1
R26 1
R24 1
R22 1
R14_forward 1e+03
R03_backward 1e+03
R02_forward 1e+03
R04_backward 1e+03
R19_backward 1e+03
R21_backward 1e+03
R20_backward 1e+03
EX_X 1
EX_Y 1
objective 1
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 2.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: max
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 6.02E+26
R15 continuous 0.00E+00 6.02E+26
R12 continuous 0.00E+00 6.02E+26
R07 continuous 0.00E+00 6.02E+26
R13 continuous 0.00E+00 6.02E+26
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 6.02E+26
R05 continuous 0.00E+00 6.02E+26
R10 continuous 0.00E+00 6.02E+26
R06 continuous 0.00E+00 6.02E+26
R09 continuous 0.00E+00 6.02E+26
R08 continuous 0.00E+00 6.02E+26
R11 continuous 0.00E+00 6.02E+26
R18 continuous 0.00E+00 6.02E+26
R26 continuous 0.00E+00 6.02E+26
R25 continuous 0.00E+00 6.02E+26
R24 continuous 0.00E+00 6.02E+26
R22 continuous 0.00E+00 6.02E+26
R14_forward continuous 0.00E+00 6.02E+26
R14_backward continuous 0.00E+00 6.02E+26
R03_forward continuous 0.00E+00 6.02E+26
R03_backward continuous 0.00E+00 6.02E+26
R02_forward continuous 0.00E+00 6.02E+26
R02_backward continuous 0.00E+00 6.02E+26
R04_forward continuous 0.00E+00 6.02E+26
R04_backward continuous 0.00E+00 6.02E+26
R19_forward continuous 0.00E+00 6.02E+26
R19_backward continuous 0.00E+00 6.02E+26
R23_forward continuous 0.00E+00 6.02E+26
R23_backward continuous 0.00E+00 6.02E+26
R21_forward continuous 0.00E+00 6.02E+26
R21_backward continuous 0.00E+00 6.02E+26
R20_forward continuous 0.00E+00 6.02E+26
R20_backward continuous 0.00E+00 6.02E+26
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: min
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
0 non-zero reaction fluxes
objective 0
|
Standard error | N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
14% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 9 days, 2:04:28
30% 1/5 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 2/5 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
76% 3/5 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 4/5 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
16% 0/5 (max_time) |## | Elapsed Time: 0:00:00 ETA: 8 days, 0:41:37
32% 1/5 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 2/5 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
76% 3/5 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 4/5 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 1/1 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 1/1 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 94 days, 22:19:36
13% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
25% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
95% 47/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 92 days, 3:02:21
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 22/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
51% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
59% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
66% 33/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
73% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
83% 41/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
94% 47/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 92 days, 17:51:44
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
29% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
37% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
49% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
61% 30/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 92 days, 11:20:58
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 23/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 28/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
67% 33/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
87% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 80 days, 18:27:27
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 22/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
51% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
59% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
69% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
91% 45/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 83 days, 20:06:56
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
29% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
37% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
57% 28/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
63% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
71% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
81% 40/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
91% 45/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
97% 48/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 92 days, 2:00:31
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 25/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
59% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
69% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
90% 45/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 82 days, 20:58:54
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 20/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 28/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
63% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 43/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
95% 47/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
9% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 80 days, 19:38:21
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
28% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
38% 19/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
59% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 39/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 44/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
97% 48/50 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 72 days, 7:23:51
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
45% 22/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
76% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
89% 44/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
9% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 69 days, 18:02:54
17% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:00
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 22/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
53% 26/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 31/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
82% 41/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 46/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 70 days, 9:44:20
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:00
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 80 days, 9:52:42
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8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 78 days, 0:21:24
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 75 days, 6:01:55
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27% 13/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 90 days, 1:04:17
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 89 days, 9:03:09
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32% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 93 days, 4:10:06
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27% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
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14% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 8 days, 19:23:03
24% 1/5 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:00
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8% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: 21 days, 1:46:48
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22% 2/10 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 108 days, 6:14:16
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
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22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 101 days, 13:05:05
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 88 days, 20:42:04
14% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
38% 19/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 84 days, 8:51:19
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
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27% 13/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
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44% 22/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 96 days, 4:55:34
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21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 95 days, 7:10:00
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 12:20:19
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 83 days, 13:20:24
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 95 days, 6:24:52
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 94 days, 7:42:17
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 79 days, 1:18:15
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 88 days, 6:51:52
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 89 days, 3:23:48
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 70 days, 15:02:54
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 91 days, 7:00:30
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 74 days, 4:17:32
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 87 days, 0:29:48
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 94 days, 11:31:35
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
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20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 96 days, 11:04:57
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 93 days, 13:26:33
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 84 days, 5:23:00
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9% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 85 days, 22:52:52
16% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
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8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 86 days, 18:04:30
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|
tests.test_simulation.TestSimulation |
test_run |
tests/test_simulation.py |
70 |
Pass |
3.090 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_run_fba_solver |
tests/submodels/test_dfba.py |
642 |
Pass |
1.288 |
Result type | |
Message | |
Details | |
Standard output |
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'I: No scaling (scaling factors equal 1) and no negative species population checks'
--- variables ---
name type lower upper
bound bound
ex_m3 continuous 0.00E+00 0.00E+00
r3 continuous 0.00E+00 5.00E+00
r4 continuous 0.00E+00 6.00E+00
ex_m1_forward continuous 0.00E+00 0.00E+00
ex_m1_backward continuous 1.00E-10 1.20E+01
ex_m2_forward continuous 0.00E+00 0.00E+00
ex_m2_backward continuous 1.00E-10 1.20E+01
r1_forward continuous 0.00E+00 1.00E+00
r1_backward continuous 0.00E+00 1.00E+00
r2_forward continuous 0.00E+00 3.00E+00
r2_backward continuous 0.00E+00 2.00E+00
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
m3[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 ex_m3 continuous
1.0 r3 continuous
1.0 r4 continuous
1.0 r1_forward continuous
-1.0 r1_backward continuous
-1.0 biomass_reaction continuous
m1[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r3 continuous
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
-1.0 r2_forward continuous
1.0 r2_backward continuous
m2[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r4 continuous
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
1.0 r2_forward continuous
-1.0 r2_backward continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
r3 5
r4 6
ex_m1_backward 12
ex_m2_backward 12
r1_forward 1
r2_forward 1
biomass_reaction 12
objective 12
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'II: Add negative species population constraints to I'
--- variables ---
name type lower upper
bound bound
ex_m3 continuous 0.00E+00 0.00E+00
r3 continuous 0.00E+00 5.00E+00
r4 continuous 0.00E+00 6.00E+00
ex_m1_forward continuous 0.00E+00 0.00E+00
ex_m1_backward continuous 1.00E-10 1.20E+01
ex_m2_forward continuous 0.00E+00 0.00E+00
ex_m2_backward continuous 1.00E-10 1.20E+01
r1_forward continuous 0.00E+00 1.00E+00
r1_backward continuous 0.00E+00 1.00E+00
r2_forward continuous 0.00E+00 3.00E+00
r2_backward continuous 0.00E+00 2.00E+00
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__m3[c] -1.00E+02 None
--- terms ---
-1.0 biomass_reaction continuous
-1.0 ex_m3 continuous
neg_pop_constr__m1[c] -1.00E+02 None
--- terms ---
1.0 ex_m1_backward continuous
-1.0 ex_m1_forward continuous
neg_pop_constr__m2[c] -1.00E+02 None
--- terms ---
1.0 ex_m2_backward continuous
-1.0 ex_m2_forward continuous
m3[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 ex_m3 continuous
1.0 r3 continuous
1.0 r4 continuous
1.0 r1_forward continuous
-1.0 r1_backward continuous
-1.0 biomass_reaction continuous
m1[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r3 continuous
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
-1.0 r2_forward continuous
1.0 r2_backward continuous
m2[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r4 continuous
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
1.0 r2_forward continuous
-1.0 r2_backward continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
r3 5
r4 6
ex_m1_backward 12
ex_m2_backward 12
r1_forward 1
r2_forward 1
biomass_reaction 12
objective 12
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'III: Modify II by scaling bounds by 10'
--- variables ---
name type lower upper
bound bound
ex_m3 continuous 0.00E+00 0.00E+00
r3 continuous 0.00E+00 5.00E+01
r4 continuous 0.00E+00 6.00E+01
ex_m1_forward continuous 0.00E+00 0.00E+00
ex_m1_backward continuous 1.00E-09 1.20E+02
ex_m2_forward continuous 0.00E+00 0.00E+00
ex_m2_backward continuous 1.00E-09 1.20E+02
r1_forward continuous 0.00E+00 1.00E+01
r1_backward continuous 0.00E+00 1.00E+01
r2_forward continuous 0.00E+00 3.00E+01
r2_backward continuous 0.00E+00 2.00E+01
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__m3[c] -1.00E+03 None
--- terms ---
-1.0 biomass_reaction continuous
-1.0 ex_m3 continuous
neg_pop_constr__m1[c] -1.00E+03 None
--- terms ---
1.0 ex_m1_backward continuous
-1.0 ex_m1_forward continuous
neg_pop_constr__m2[c] -1.00E+03 None
--- terms ---
1.0 ex_m2_backward continuous
-1.0 ex_m2_forward continuous
m3[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 ex_m3 continuous
1.0 r3 continuous
1.0 r4 continuous
1.0 r1_forward continuous
-1.0 r1_backward continuous
-1.0 biomass_reaction continuous
m1[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r3 continuous
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
-1.0 r2_forward continuous
1.0 r2_backward continuous
m2[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r4 continuous
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
1.0 r2_forward continuous
-1.0 r2_backward continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
r3 5
r4 6
ex_m1_backward 12
ex_m2_backward 12
r1_forward 1
r2_forward 1
biomass_reaction 12
objective 12
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'IV: Alter II so that a negative species population constraints change the solution'
--- variables ---
name type lower upper
bound bound
ex_m3 continuous 0.00E+00 0.00E+00
r3 continuous 0.00E+00 5.00E+00
r4 continuous 0.00E+00 6.00E+00
ex_m1_forward continuous 0.00E+00 0.00E+00
ex_m1_backward continuous 1.00E-10 1.20E+01
ex_m2_forward continuous 0.00E+00 0.00E+00
ex_m2_backward continuous 1.00E-10 1.20E+01
r1_forward continuous 0.00E+00 1.00E+00
r1_backward continuous 0.00E+00 1.00E+00
r2_forward continuous 0.00E+00 3.00E+00
r2_backward continuous 0.00E+00 2.00E+00
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__m3[c] -1.00E+01 None
--- terms ---
-1.0 biomass_reaction continuous
-1.0 ex_m3 continuous
neg_pop_constr__m1[c] -1.00E+01 None
--- terms ---
1.0 ex_m1_backward continuous
-1.0 ex_m1_forward continuous
neg_pop_constr__m2[c] -1.00E+01 None
--- terms ---
1.0 ex_m2_backward continuous
-1.0 ex_m2_forward continuous
m3[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 ex_m3 continuous
1.0 r3 continuous
1.0 r4 continuous
1.0 r1_forward continuous
-1.0 r1_backward continuous
-1.0 biomass_reaction continuous
m1[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r3 continuous
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
-1.0 r2_forward continuous
1.0 r2_backward continuous
m2[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r4 continuous
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
1.0 r2_forward continuous
-1.0 r2_backward continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
6 non-zero reaction fluxes
r3 5
r4 5
ex_m1_backward 8
ex_m2_backward 12
r2_backward 2
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'V: Modify II by scaling the coefficients of objective function's terms by 10'
--- variables ---
name type lower upper
bound bound
ex_m3 continuous 0.00E+00 0.00E+00
r3 continuous 0.00E+00 5.00E+00
r4 continuous 0.00E+00 6.00E+00
ex_m1_forward continuous 0.00E+00 0.00E+00
ex_m1_backward continuous 1.00E-10 1.20E+01
ex_m2_forward continuous 0.00E+00 0.00E+00
ex_m2_backward continuous 1.00E-10 1.20E+01
r1_forward continuous 0.00E+00 1.00E+00
r1_backward continuous 0.00E+00 1.00E+00
r2_forward continuous 0.00E+00 3.00E+00
r2_backward continuous 0.00E+00 2.00E+00
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__m3[c] -1.00E+02 None
--- terms ---
-1.0 biomass_reaction continuous
-1.0 ex_m3 continuous
neg_pop_constr__m1[c] -1.00E+02 None
--- terms ---
1.0 ex_m1_backward continuous
-1.0 ex_m1_forward continuous
neg_pop_constr__m2[c] -1.00E+02 None
--- terms ---
1.0 ex_m2_backward continuous
-1.0 ex_m2_forward continuous
m3[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 ex_m3 continuous
1.0 r3 continuous
1.0 r4 continuous
1.0 r1_forward continuous
-1.0 r1_backward continuous
-1.0 biomass_reaction continuous
m1[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r3 continuous
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
-1.0 r2_forward continuous
1.0 r2_backward continuous
m2[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r4 continuous
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
1.0 r2_forward continuous
-1.0 r2_backward continuous
objective direction: max
--- objective terms ---
10.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
r3 5
r4 6
ex_m1_backward 12
ex_m2_backward 12
r1_forward 1
r2_forward 1
biomass_reaction 12
objective 12
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'VI: Modify V by scaling bounds by 5'
--- variables ---
name type lower upper
bound bound
ex_m3 continuous 0.00E+00 0.00E+00
r3 continuous 0.00E+00 2.50E+01
r4 continuous 0.00E+00 3.00E+01
ex_m1_forward continuous 0.00E+00 0.00E+00
ex_m1_backward continuous 5.00E-10 6.00E+01
ex_m2_forward continuous 0.00E+00 0.00E+00
ex_m2_backward continuous 5.00E-10 6.00E+01
r1_forward continuous 0.00E+00 5.00E+00
r1_backward continuous 0.00E+00 5.00E+00
r2_forward continuous 0.00E+00 1.50E+01
r2_backward continuous 0.00E+00 1.00E+01
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__m3[c] -5.00E+02 None
--- terms ---
-1.0 biomass_reaction continuous
-1.0 ex_m3 continuous
neg_pop_constr__m1[c] -5.00E+02 None
--- terms ---
1.0 ex_m1_backward continuous
-1.0 ex_m1_forward continuous
neg_pop_constr__m2[c] -5.00E+02 None
--- terms ---
1.0 ex_m2_backward continuous
-1.0 ex_m2_forward continuous
m3[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 ex_m3 continuous
1.0 r3 continuous
1.0 r4 continuous
1.0 r1_forward continuous
-1.0 r1_backward continuous
-1.0 biomass_reaction continuous
m1[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r3 continuous
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
-1.0 r2_forward continuous
1.0 r2_backward continuous
m2[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r4 continuous
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
1.0 r2_forward continuous
-1.0 r2_backward continuous
objective direction: max
--- objective terms ---
10.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
r3 5
r4 6
ex_m1_backward 12
ex_m2_backward 12
r1_forward 1
r2_forward 1
biomass_reaction 12
objective 12
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
ex_m3 continuous 0.00E+00 0.00E+00
r3 continuous 0.00E+00 5.00E+00
r4 continuous 0.00E+00 6.00E+00
ex_m1_forward continuous 6.02E+14 6.02E+14
ex_m1_backward continuous 1.00E-10 1.20E+01
ex_m2_forward continuous 0.00E+00 0.00E+00
ex_m2_backward continuous 1.00E-10 1.20E+01
r1_forward continuous 0.00E+00 1.00E+00
r1_backward continuous 0.00E+00 1.00E+00
r2_forward continuous 0.00E+00 3.00E+00
r2_backward continuous 0.00E+00 2.00E+00
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__m3[c] -1.00E+02 None
--- terms ---
-1.0 biomass_reaction continuous
-1.0 ex_m3 continuous
neg_pop_constr__m1[c] -1.00E+02 None
--- terms ---
1.0 ex_m1_backward continuous
-1.0 ex_m1_forward continuous
neg_pop_constr__m2[c] -1.00E+02 None
--- terms ---
1.0 ex_m2_backward continuous
-1.0 ex_m2_forward continuous
m3[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 ex_m3 continuous
1.0 r3 continuous
1.0 r4 continuous
1.0 r1_forward continuous
-1.0 r1_backward continuous
-1.0 biomass_reaction continuous
m1[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r3 continuous
-1.0 ex_m1_forward continuous
1.0 ex_m1_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
-1.0 r2_forward continuous
1.0 r2_backward continuous
m2[c] 0.00E+00 0.00E+00
--- terms ---
-2.0 r4 continuous
-1.0 ex_m2_forward continuous
1.0 ex_m2_backward continuous
-1.0 r1_forward continuous
1.0 r1_backward continuous
1.0 r2_forward continuous
-1.0 r2_backward continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
Version identifier: 12.10.0.0 | 2019-11-26 | 843d4de
CPXPARAM_Read_Scale 1
CPXPARAM_Read_DataCheck 1
CPXPARAM_Emphasis_Numerical 1
Bound infeasibility column 'ex_m1_backward'.
Presolve time = 0.00 sec. (0.00 ticks)
|
Standard error | |
|
|
tests.testing.test_verify.TestVerificationSuite |
test_run_multialg |
tests/testing/test_verify.py |
859 |
Pass |
188.646 |
Result type | |
Message | |
Details | |
Standard output | starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
starting run 1 of 10 of model test_case_00007_multialgorithmic
starting run 2 of 10 of model test_case_00007_multialgorithmic
starting run 4 of 10 of model test_case_00007_multialgorithmic
starting run 8 of 10 of model test_case_00007_multialgorithmic
|
Standard error | N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 103 days, 2:50:21
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:06
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:06
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:04
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:04
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:04
17% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:03
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:03
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:03
25% 12/50 (max_time) |#### | Elapsed Time: 0:00:01 ETA: 0:00:03
27% 13/50 (max_time) |##### | Elapsed Time: 0:00:01 ETA: 0:00:02
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:01 ETA: 0:00:02
33% 16/50 (max_time) |##### | Elapsed Time: 0:00:01 ETA: 0:00:02
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:01 ETA: 0:00:02
38% 19/50 (max_time) |###### | Elapsed Time: 0:00:01 ETA: 0:00:02
40% 20/50 (max_time) |####### | Elapsed Time: 0:00:01 ETA: 0:00:02
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:01 ETA: 0:00:02
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1% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 112 days, 18:17:07
2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:11
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:11
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
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1% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 124 days, 21:49:14
2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:12
3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:12
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:07
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 94 days, 23:45:31
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 96 days, 10:53:33
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 16:02:53
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 93 days, 17:33:24
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 12:07:06
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 98 days, 10:14:02
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 98 days, 4:41:15
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
9% 4/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:03
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N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 98 days, 3:05:46
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
9% 4/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
16% 8/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 87 days, 11:20:16
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 113 days, 19:24:09
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 92 days, 1:11:11
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 9:54:59
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 108 days, 21:41:26
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6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 106 days, 10:01:15
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9% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 14:12:05
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9% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 92 days, 6:14:03
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 20:12:52
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10% 5/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 93 days, 17:05:39
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8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 89 days, 14:03:31
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 15:27:10
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7% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 95 days, 19:15:58
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8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 95 days, 23:49:13
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 111 days, 19:39:03
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 120 days, 6:36:39
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 133 days, 16:28:37
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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1% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 112 days, 22:25:31
3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:08
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:08
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7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:06
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 104 days, 18:25:39
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 90 days, 0:56:45
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 90 days, 18:30:56
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 96 days, 13:37:10
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 101 days, 0:47:16
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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|
tests.test_multialgorithm_simulation.TestRunSSA... |
test_run_multiple_ssa_submo... |
tests/test_multialgorithm_s... |
517 |
Skipped |
0.002 |
Result type | pytest.skip |
Message | debug |
Details | tests/test_multialgorithm_simulation.py:517: debug |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_run_ode_solver |
tests/submodels/test_odes.py |
186 |
Pass |
0.102 |
Result type | |
Message | |
Details | |
Standard output |
rxn: [compt_1]: spec_type_0 ==> spec_type_1
rate law: k_cat_1_1_for * spec_type_0[compt_1] / Avogadro / volume_compt_1
name: LSP_test_model
time: 0
species_name last_population continuous_time population_slopes
spec_type_0[compt_1] 1000000000.12
spec_type_1[compt_1] 1000000000.12
external step 0.0000e+00 0.0000e+00 N/A N/A 1000000000.1 1000000000.1
end data
name: LSP_test_model
time: 0
species_name last_population continuous_time population_slopes
spec_type_0[compt_1] 1000000000.12 0.00 submodel_1: -16.605390429496765
spec_type_1[compt_1] 1000000000.12 0.00 submodel_1: 16.605390429496765
|
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestRunSSA... |
test_run_ssa_suite |
tests/test_multialgorithm_s... |
488 |
Skipped |
0.002 |
Result type | pytest.skip |
Message | debug |
Details | tests/test_multialgorithm_simulation.py:488: debug |
Standard output | |
Standard error | |
|
|
tests.submodels.test_multiple_submodels.TestMul... |
test_run_submodel |
tests/submodels/test_multip... |
58 |
Pass |
1072.116 |
Result type | |
Message | |
Details | |
Standard output |
Species that lack initial concentrations:
CO2[c]
Reactants in reactions that lack initial concentrations:
Reactants in dfba_obj_reactions that lack initial concentrations:
Model with:
4 submodels
2 compartments
143 species types
175 species
92 parameters
31 references
2 dFBA objective reactions
175 reactions
167 rate laws
*** RUN 0 with seed 17 ***
Simulated 32885 events
Results in '/root/project/runs/2021-01-03/22:21:29.911247'
|
Standard error |
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
AlaAbcTransport continuous 0.00E+00 9.93E+03
ArgAbcTransport continuous 0.00E+00 9.93E+03
AsnAbcTransport continuous 0.00E+00 9.93E+03
AspAbcTransport continuous 0.00E+00 9.93E+03
CysAbcTransport continuous 0.00E+00 9.93E+03
Dipeptidase_Ala continuous 0.00E+00 2.83E+10
Dipeptidase_Arg continuous 0.00E+00 2.83E+10
Dipeptidase_Asn continuous 0.00E+00 2.83E+10
Dipeptidase_Asp continuous 0.00E+00 2.83E+10
Dipeptidase_Cys continuous 0.00E+00 2.83E+10
Dipeptidase_Gln continuous 0.00E+00 2.83E+10
Dipeptidase_Glu continuous 0.00E+00 2.83E+10
Dipeptidase_Gly continuous 0.00E+00 2.83E+10
Dipeptidase_His continuous 0.00E+00 2.83E+10
Dipeptidase_Ile continuous 0.00E+00 2.83E+10
Dipeptidase_Leu continuous 0.00E+00 2.83E+10
Dipeptidase_Lys continuous 0.00E+00 2.83E+10
Dipeptidase_Met continuous 0.00E+00 2.83E+10
Dipeptidase_Phe continuous 0.00E+00 2.83E+10
Dipeptidase_Pro continuous 0.00E+00 2.83E+10
Dipeptidase_Ser continuous 0.00E+00 2.83E+10
Dipeptidase_Thr continuous 0.00E+00 2.83E+10
Dipeptidase_Trp continuous 0.00E+00 2.83E+10
Dipeptidase_Tyr continuous 0.00E+00 2.83E+10
Dipeptidase_Val continuous 0.00E+00 2.83E+10
GlcPtsTransport continuous 0.00E+00 5.54E+04
GlnAbcTransport continuous 0.00E+00 9.93E+03
GluAbcTransport continuous 0.00E+00 9.93E+03
GlyAbcTransport continuous 0.00E+00 9.93E+03
GnTransport continuous 0.00E+00 2.83E+10
HisAbcTransport continuous 0.00E+00 9.93E+03
IleAbcTransport continuous 0.00E+00 9.93E+03
LacTransport continuous 0.00E+00 2.83E+10
LeuAbcTransport continuous 0.00E+00 9.93E+03
LysAbcTransport continuous 0.00E+00 9.93E+03
MetAbcTransport continuous 0.00E+00 9.93E+03
Pfk_ATP continuous 0.00E+00 1.22E+08
Pfk_GTP continuous 0.00E+00 3.72E+05
Pfk_UTP continuous 0.00E+00 1.46E+05
PheAbcTransport continuous 0.00E+00 9.93E+03
PiAbcTransport continuous 0.00E+00 9.83E+04
Ppa continuous 0.00E+00 1.54E+10
ProAbcTransport continuous 0.00E+00 9.93E+03
PRPS continuous 0.00E+00 7.07E+04
Pyk_ATP continuous 0.00E+00 1.39E+08
Pyk_CTP continuous 0.00E+00 6.79E+05
Pyk_GTP continuous 0.00E+00 2.89E+06
PykUDP continuous 0.00E+00 1.44E+04
SerAbcTransport continuous 0.00E+00 9.93E+03
ThrAbcTransport continuous 0.00E+00 9.93E+03
TrpAbcTransport continuous 0.00E+00 9.93E+03
TyrAbcTransport continuous 0.00E+00 9.93E+03
Uck_CYTD continuous 0.00E+00 3.15E+05
Uck_URI continuous 0.00E+00 7.66E+04
ValAbcTransport continuous 0.00E+00 9.93E+03
AdnTransport_forward continuous 0.00E+00 2.83E+10
AdnTransport_backward continuous 0.00E+00 2.83E+10
AK_AMP_forward continuous 0.00E+00 5.61E+04
AK_AMP_backward continuous 0.00E+00 1.78E+14
AK_GTP_forward continuous 0.00E+00 5.61E+04
AK_GTP_backward continuous 0.00E+00 5.61E+04
APRT_forward continuous 0.00E+00 5.58E+04
APRT_backward continuous 0.00E+00 5.58E+04
CmpK_CMP_forward continuous 0.00E+00 1.74E+06
CmpK_CMP_backward continuous 0.00E+00 6.94E+03
CO2Transport_forward continuous 0.00E+00 2.83E+10
CO2Transport_backward continuous 0.00E+00 2.83E+10
CytdTransport_forward continuous 0.00E+00 2.83E+10
CytdTransport_backward continuous 0.00E+00 2.83E+10
Eno_forward continuous 0.00E+00 8.30E+05
Eno_backward continuous 0.00E+00 4.61E+03
Fba_FDP_forward continuous 0.00E+00 2.14E+07
Fba_FDP_backward continuous 0.00E+00 2.13E+04
GapDH_forward continuous 0.00E+00 1.21E+07
GapDH_backward continuous 0.00E+00 2.87E+03
Gpm_forward continuous 0.00E+00 3.73E+07
Gpm_backward continuous 0.00E+00 2.82E+03
GUK_GMP_forward continuous 0.00E+00 1.39E+04
GUK_GMP_backward continuous 0.00E+00 5.05E+04
H2OTransport_forward continuous 0.00E+00 2.83E+10
H2OTransport_backward continuous 0.00E+00 2.83E+10
HPRT_forward continuous 0.00E+00 8.58E+07
HPRT_backward continuous 0.00E+00 1.36E+05
HTransport_forward continuous 0.00E+00 2.83E+10
HTransport_backward continuous 0.00E+00 2.83E+10
Ldh_forward continuous 0.00E+00 9.51E+06
Ldh_backward continuous 0.00E+00 4.32E+04
NOX_forward continuous 0.00E+00 1.09E+09
NOX_backward continuous 0.00E+00 5.05E+04
O2Transport_forward continuous 0.00E+00 2.83E+10
O2Transport_backward continuous 0.00E+00 2.83E+10
Pgi_forward continuous 0.00E+00 1.60E+08
Pgi_backward continuous 0.00E+00 1.06E+05
Pgk_ATP_forward continuous 0.00E+00 1.63E+09
Pgk_ATP_backward continuous 0.00E+00 1.84E+04
Pgk_GTP_forward continuous 0.00E+00 6.24E+06
Pgk_GTP_backward continuous 0.00E+00 1.84E+04
Rpe_forward continuous 0.00E+00 1.04E+07
Rpe_backward continuous 0.00E+00 8.65E+04
RpiA_forward continuous 0.00E+00 3.61E+08
RpiA_backward continuous 0.00E+00 8.71E+04
Tal_forward continuous 0.00E+00 2.83E+10
Tal_backward continuous 0.00E+00 2.83E+10
Tim_forward continuous 0.00E+00 5.27E+04
Tim_backward continuous 0.00E+00 5.27E+04
Tkl_F6P_forward continuous 0.00E+00 1.13E+04
Tkl_F6P_backward continuous 0.00E+00 1.13E+04
Tkl_S7P_forward continuous 0.00E+00 1.13E+04
Tkl_S7P_backward continuous 0.00E+00 1.13E+04
UmpK_forward continuous 0.00E+00 3.46E+05
UmpK_backward continuous 0.00E+00 6.66E+03
UPRT_forward continuous 0.00E+00 2.94E+04
UPRT_backward continuous 0.00E+00 2.94E+04
UraTransport_forward continuous 0.00E+00 2.83E+10
UraTransport_backward continuous 0.00E+00 2.83E+10
__dfba_ex_Metabolism_LysLys_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_LysLys_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_TrpTrp_e_forward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_TrpTrp_e_backward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_LAC_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_LAC_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_MetMet_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_MetMet_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ThrThr_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ThrThr_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_LeuLeu_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_LeuLeu_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GluGlu_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GluGlu_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_URA_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_URA_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_PhePhe_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_PhePhe_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_Pi_e_forward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_Pi_e_backward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_CYTD_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_CYTD_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_TyrTyr_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_TyrTyr_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_AspAsp_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_AspAsp_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_H_e_forward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_H_e_backward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_GN_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GN_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_H2O_e_forward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_H2O_e_backward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_SerSer_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_SerSer_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_IleIle_e_forward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_IleIle_e_backward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_AD_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_AD_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_HisHis_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_HisHis_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ProPro_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ProPro_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ArgArg_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ArgArg_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_AlaAla_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_AlaAla_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GlnGln_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GlnGln_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_AsnAsn_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_AsnAsn_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_CO2_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_CO2_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ValVal_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_ValVal_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GLC_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GLC_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_O2_e_forward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_O2_e_backward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_CysCys_e_forward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_CysCys_e_backward continuous 0.00E+00 2.83E+01
__dfba_ex_Metabolism_GlyGly_e_forward continuous 0.00E+00 4.72E+01
__dfba_ex_Metabolism_GlyGly_e_backward continuous 0.00E+00 4.72E+01
Metabolism_net_rxn continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__ALA[c] -6.95E+05 None
--- terms ---
-34190.38Metabolism_net_rxn continuous
neg_pop_constr__ARG[c] -4.87E+04 None
--- terms ---
-40890.38Metabolism_net_rxn continuous
neg_pop_constr__ASN[c] -3.17E+05 None
--- terms ---
-23190.38Metabolism_net_rxn continuous
neg_pop_constr__ASP[c] -3.14E+05 None
--- terms ---
-24290.38Metabolism_net_rxn continuous
neg_pop_constr__ATP[c] -2.23E+05 None
--- terms ---
-1101856.0Metabolism_net_rxn continuous
neg_pop_constr__CTP[c] -5.16E+05 None
--- terms ---
-1164906.0Metabolism_net_rxn continuous
neg_pop_constr__CYS[c] -8.46E+04 None
--- terms ---
-22290.38Metabolism_net_rxn continuous
neg_pop_constr__GLN[c] -1.55E+05 None
--- terms ---
-24690.38Metabolism_net_rxn continuous
neg_pop_constr__GLU[c] -3.65E+05 None
--- terms ---
-22690.38Metabolism_net_rxn continuous
neg_pop_constr__GLY[c] -9.82E+04 None
--- terms ---
-31190.38Metabolism_net_rxn continuous
neg_pop_constr__GTP[c] -2.87E+05 None
--- terms ---
-1728316.0Metabolism_net_rxn continuous
neg_pop_constr__H2O[c] -8.44E+08 None
--- terms ---
-1521617000.0Metabolism_net_rxn continuous
neg_pop_constr__HIS[c] -3.31E+05 None
--- terms ---
-21590.38Metabolism_net_rxn continuous
neg_pop_constr__ILE[c] -3.42E+05 None
--- terms ---
-29290.38Metabolism_net_rxn continuous
neg_pop_constr__LEU[c] -5.34E+04 None
--- terms ---
-41190.38Metabolism_net_rxn continuous
neg_pop_constr__LYS[c] -1.50E+04 None
--- terms ---
-21990.38Metabolism_net_rxn continuous
neg_pop_constr__MET[c] -5.04E+03 None
--- terms ---
-21390.38Metabolism_net_rxn continuous
neg_pop_constr__PHE[c] -3.70E+05 None
--- terms ---
-23890.38Metabolism_net_rxn continuous
neg_pop_constr__PRO[c] -2.04E+05 None
--- terms ---
-34390.38Metabolism_net_rxn continuous
neg_pop_constr__SER[c] -1.30E+05 None
--- terms ---
-44490.38Metabolism_net_rxn continuous
neg_pop_constr__THR[c] -2.44E+05 None
--- terms ---
-36190.38Metabolism_net_rxn continuous
neg_pop_constr__TRP[c] -9.56E+04 None
--- terms ---
-22190.38Metabolism_net_rxn continuous
neg_pop_constr__TYR[c] -2.75E+05 None
--- terms ---
-21990.38Metabolism_net_rxn continuous
neg_pop_constr__UTP[c] -4.87E+05 None
--- terms ---
-1132896.0Metabolism_net_rxn continuous
neg_pop_constr__VAL[c] -1.70E+03 None
--- terms ---
-33790.38Metabolism_net_rxn continuous
neg_pop_constr__ProPro[e] -4.09E+22 None
--- terms ---
-1.0 __dfba_ex_Metabolism_ProPro_e_backward continuous
1.0 __dfba_ex_Metabolism_ProPro_e_forward continuous
neg_pop_constr__AlaAla[e] -1.61E+22 None
--- terms ---
-1.0 __dfba_ex_Metabolism_AlaAla_e_backward continuous
1.0 __dfba_ex_Metabolism_AlaAla_e_forward continuous
neg_pop_constr__AspAsp[e] -1.75E+22 None
--- terms ---
1.0 __dfba_ex_Metabolism_AspAsp_e_forward continuous
-1.0 __dfba_ex_Metabolism_AspAsp_e_backward continuous
neg_pop_constr__H[e] -3.63E+19 None
--- terms ---
-1.0 __dfba_ex_Metabolism_H_e_backward continuous
1.0 __dfba_ex_Metabolism_H_e_forward continuous
neg_pop_constr__SerSer[e] -2.96E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_SerSer_e_backward continuous
1.0 __dfba_ex_Metabolism_SerSer_e_forward continuous
neg_pop_constr__HisHis[e] -1.20E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_HisHis_e_backward continuous
1.0 __dfba_ex_Metabolism_HisHis_e_forward continuous
neg_pop_constr__TrpTrp[e] -7.33E+21 None
--- terms ---
1.0 __dfba_ex_Metabolism_TrpTrp_e_forward continuous
-1.0 __dfba_ex_Metabolism_TrpTrp_e_backward continuous
neg_pop_constr__AsnAsn[e] -1.34E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_AsnAsn_e_backward continuous
1.0 __dfba_ex_Metabolism_AsnAsn_e_forward continuous
neg_pop_constr__ValVal[e] -3.28E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_ValVal_e_backward continuous
1.0 __dfba_ex_Metabolism_ValVal_e_forward continuous
neg_pop_constr__ArgArg[e] -6.74E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_ArgArg_e_backward continuous
1.0 __dfba_ex_Metabolism_ArgArg_e_forward continuous
neg_pop_constr__ThrThr[e] -6.08E+21 None
--- terms ---
1.0 __dfba_ex_Metabolism_ThrThr_e_forward continuous
-1.0 __dfba_ex_Metabolism_ThrThr_e_backward continuous
neg_pop_constr__Pi[e] -2.98E+22 None
--- terms ---
-1.0 __dfba_ex_Metabolism_Pi_e_backward continuous
1.0 __dfba_ex_Metabolism_Pi_e_forward continuous
neg_pop_constr__LeuLeu[e] -3.37E+22 None
--- terms ---
-1.0 __dfba_ex_Metabolism_LeuLeu_e_backward continuous
1.0 __dfba_ex_Metabolism_LeuLeu_e_forward continuous
neg_pop_constr__PhePhe[e] -2.92E+22 None
--- terms ---
1.0 __dfba_ex_Metabolism_PhePhe_e_forward continuous
-1.0 __dfba_ex_Metabolism_PhePhe_e_backward continuous
neg_pop_constr__GlnGln[e] -8.30E+21 None
--- terms ---
1.0 __dfba_ex_Metabolism_GlnGln_e_forward continuous
-1.0 __dfba_ex_Metabolism_GlnGln_e_backward continuous
neg_pop_constr__CysCys[e] -1.45E+22 None
--- terms ---
1.0 __dfba_ex_Metabolism_CysCys_e_forward continuous
-1.0 __dfba_ex_Metabolism_CysCys_e_backward continuous
neg_pop_constr__URA[e] -1.11E+21 None
--- terms ---
1.0 __dfba_ex_Metabolism_URA_e_forward continuous
-1.0 __dfba_ex_Metabolism_URA_e_backward continuous
neg_pop_constr__GLC[e] -1.04E+23 None
--- terms ---
1.0 __dfba_ex_Metabolism_GLC_e_forward continuous
-1.0 __dfba_ex_Metabolism_GLC_e_backward continuous
neg_pop_constr__LAC[e] -1.37E+19 None
--- terms ---
1.0 __dfba_ex_Metabolism_LAC_e_forward continuous
-1.0 __dfba_ex_Metabolism_LAC_e_backward continuous
neg_pop_constr__GN[e] -1.89E+21 None
--- terms ---
1.0 __dfba_ex_Metabolism_GN_e_forward continuous
-1.0 __dfba_ex_Metabolism_GN_e_backward continuous
neg_pop_constr__H2O[e] -1.77E+25 None
--- terms ---
1.0 __dfba_ex_Metabolism_H2O_e_forward continuous
-1.0 __dfba_ex_Metabolism_H2O_e_backward continuous
neg_pop_constr__MetMet[e] -1.64E+22 None
--- terms ---
1.0 __dfba_ex_Metabolism_MetMet_e_forward continuous
-1.0 __dfba_ex_Metabolism_MetMet_e_backward continuous
neg_pop_constr__AD[e] -4.24E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_AD_e_backward continuous
1.0 __dfba_ex_Metabolism_AD_e_forward continuous
neg_pop_constr__CO2[e] -9.24E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_CO2_e_backward continuous
1.0 __dfba_ex_Metabolism_CO2_e_forward continuous
neg_pop_constr__LysLys[e] -2.47E+22 None
--- terms ---
-1.0 __dfba_ex_Metabolism_LysLys_e_backward continuous
1.0 __dfba_ex_Metabolism_LysLys_e_forward continuous
neg_pop_constr__CYTD[e] -6.48E+20 None
--- terms ---
1.0 __dfba_ex_Metabolism_CYTD_e_forward continuous
-1.0 __dfba_ex_Metabolism_CYTD_e_backward continuous
neg_pop_constr__TyrTyr[e] -5.79E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_TyrTyr_e_backward continuous
1.0 __dfba_ex_Metabolism_TyrTyr_e_forward continuous
neg_pop_constr__GlyGly[e] -2.72E+22 None
--- terms ---
1.0 __dfba_ex_Metabolism_GlyGly_e_forward continuous
-1.0 __dfba_ex_Metabolism_GlyGly_e_backward continuous
neg_pop_constr__GluGlu[e] -8.15E+22 None
--- terms ---
-1.0 __dfba_ex_Metabolism_GluGlu_e_backward continuous
1.0 __dfba_ex_Metabolism_GluGlu_e_forward continuous
neg_pop_constr__O2[e] -8.81E+20 None
--- terms ---
1.0 __dfba_ex_Metabolism_O2_e_forward continuous
-1.0 __dfba_ex_Metabolism_O2_e_backward continuous
neg_pop_constr__IleIle[e] -5.33E+21 None
--- terms ---
-1.0 __dfba_ex_Metabolism_IleIle_e_backward continuous
1.0 __dfba_ex_Metabolism_IleIle_e_forward continuous
AlaAla[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 AlaAbcTransport continuous
1.0 __dfba_ex_Metabolism_AlaAla_e_forward continuous
-1.0 __dfba_ex_Metabolism_AlaAla_e_backward continuous
ATP[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 AlaAbcTransport continuous
-1.0 ArgAbcTransport continuous
-1.0 AsnAbcTransport continuous
-1.0 AspAbcTransport continuous
-1.0 CysAbcTransport continuous
-1.0 GlnAbcTransport continuous
-1.0 GluAbcTransport continuous
-1.0 GlyAbcTransport continuous
-1.0 HisAbcTransport continuous
-1.0 IleAbcTransport continuous
-1.0 LeuAbcTransport continuous
-1.0 LysAbcTransport continuous
-1.0 MetAbcTransport continuous
-1.0 Pfk_ATP continuous
-1.0 PheAbcTransport continuous
-1.0 PiAbcTransport continuous
-1.0 ProAbcTransport continuous
-1.0 PRPS continuous
1.0 Pyk_ATP continuous
-1.0 SerAbcTransport continuous
-1.0 ThrAbcTransport continuous
-1.0 TrpAbcTransport continuous
-1.0 TyrAbcTransport continuous
-1.0 Uck_CYTD continuous
-1.0 Uck_URI continuous
-1.0 ValAbcTransport continuous
-1.0 AK_AMP_forward continuous
1.0 AK_AMP_backward continuous
-1.0 CmpK_CMP_forward continuous
1.0 CmpK_CMP_backward continuous
-1.0 GUK_GMP_forward continuous
1.0 GUK_GMP_backward continuous
-1.0 Pgk_ATP_forward continuous
1.0 Pgk_ATP_backward continuous
-1.0 UmpK_forward continuous
1.0 UmpK_backward continuous
-1101856.0Metabolism_net_rxn continuous
H2O[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 AlaAbcTransport continuous
-1.0 ArgAbcTransport continuous
-1.0 AsnAbcTransport continuous
-1.0 AspAbcTransport continuous
-1.0 CysAbcTransport continuous
-1.0 Dipeptidase_Ala continuous
-1.0 Dipeptidase_Arg continuous
-1.0 Dipeptidase_Asn continuous
-1.0 Dipeptidase_Asp continuous
-1.0 Dipeptidase_Cys continuous
-1.0 Dipeptidase_Gln continuous
-1.0 Dipeptidase_Glu continuous
-1.0 Dipeptidase_Gly continuous
-1.0 Dipeptidase_His continuous
-1.0 Dipeptidase_Ile continuous
-1.0 Dipeptidase_Leu continuous
-1.0 Dipeptidase_Lys continuous
-1.0 Dipeptidase_Met continuous
-1.0 Dipeptidase_Phe continuous
-1.0 Dipeptidase_Pro continuous
-1.0 Dipeptidase_Ser continuous
-1.0 Dipeptidase_Thr continuous
-1.0 Dipeptidase_Trp continuous
-1.0 Dipeptidase_Tyr continuous
-1.0 Dipeptidase_Val continuous
-1.0 GlnAbcTransport continuous
-1.0 GluAbcTransport continuous
-1.0 GlyAbcTransport continuous
-1.0 HisAbcTransport continuous
-1.0 IleAbcTransport continuous
-1.0 LeuAbcTransport continuous
-1.0 LysAbcTransport continuous
-1.0 MetAbcTransport continuous
-1.0 PheAbcTransport continuous
-1.0 PiAbcTransport continuous
-1.0 Ppa continuous
-1.0 ProAbcTransport continuous
-1.0 SerAbcTransport continuous
-1.0 ThrAbcTransport continuous
-1.0 TrpAbcTransport continuous
-1.0 TyrAbcTransport continuous
-1.0 ValAbcTransport continuous
1.0 Eno_forward continuous
-1.0 Eno_backward continuous
1.0 H2OTransport_forward continuous
-1.0 H2OTransport_backward continuous
2.0 NOX_forward continuous
-2.0 NOX_backward continuous
-1521617000.0Metabolism_net_rxn continuous
ADP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 AlaAbcTransport continuous
1.0 ArgAbcTransport continuous
1.0 AsnAbcTransport continuous
1.0 AspAbcTransport continuous
1.0 CysAbcTransport continuous
1.0 GlnAbcTransport continuous
1.0 GluAbcTransport continuous
1.0 GlyAbcTransport continuous
1.0 HisAbcTransport continuous
1.0 IleAbcTransport continuous
1.0 LeuAbcTransport continuous
1.0 LysAbcTransport continuous
1.0 MetAbcTransport continuous
1.0 Pfk_ATP continuous
1.0 PheAbcTransport continuous
1.0 PiAbcTransport continuous
1.0 ProAbcTransport continuous
-1.0 Pyk_ATP continuous
1.0 SerAbcTransport continuous
1.0 ThrAbcTransport continuous
1.0 TrpAbcTransport continuous
1.0 TyrAbcTransport continuous
1.0 Uck_CYTD continuous
1.0 Uck_URI continuous
1.0 ValAbcTransport continuous
2.0 AK_AMP_forward continuous
-2.0 AK_AMP_backward continuous
1.0 AK_GTP_forward continuous
-1.0 AK_GTP_backward continuous
1.0 CmpK_CMP_forward continuous
-1.0 CmpK_CMP_backward continuous
1.0 GUK_GMP_forward continuous
-1.0 GUK_GMP_backward continuous
1.0 Pgk_ATP_forward continuous
-1.0 Pgk_ATP_backward continuous
1.0 UmpK_forward continuous
-1.0 UmpK_backward continuous
AlaAla[c] 0.00E+00 0.00E+00
--- terms ---
1.0 AlaAbcTransport continuous
-1.0 Dipeptidase_Ala continuous
H[c] 0.00E+00 0.00E+00
--- terms ---
1.0 AlaAbcTransport continuous
1.0 ArgAbcTransport continuous
1.0 AsnAbcTransport continuous
1.0 AspAbcTransport continuous
1.0 CysAbcTransport continuous
1.0 GlnAbcTransport continuous
1.0 GluAbcTransport continuous
1.0 GlyAbcTransport continuous
1.0 GnTransport continuous
1.0 HisAbcTransport continuous
1.0 IleAbcTransport continuous
-1.0 LacTransport continuous
1.0 LeuAbcTransport continuous
1.0 LysAbcTransport continuous
1.0 MetAbcTransport continuous
1.0 Pfk_ATP continuous
1.0 Pfk_GTP continuous
1.0 Pfk_UTP continuous
1.0 PheAbcTransport continuous
1.0 PiAbcTransport continuous
1.0 ProAbcTransport continuous
1.0 PRPS continuous
-1.0 Pyk_ATP continuous
-1.0 Pyk_CTP continuous
-1.0 Pyk_GTP continuous
-1.0 PykUDP continuous
1.0 SerAbcTransport continuous
1.0 ThrAbcTransport continuous
1.0 TrpAbcTransport continuous
1.0 TyrAbcTransport continuous
1.0 Uck_CYTD continuous
1.0 Uck_URI continuous
1.0 ValAbcTransport continuous
1.0 AdnTransport_forward continuous
-1.0 AdnTransport_backward continuous
-1.0 APRT_forward continuous
1.0 APRT_backward continuous
1.0 CytdTransport_forward continuous
-1.0 CytdTransport_backward continuous
1.0 GapDH_forward continuous
-1.0 GapDH_backward continuous
-1.0 HPRT_forward continuous
1.0 HPRT_backward continuous
1.0 HTransport_forward continuous
-1.0 HTransport_backward continuous
1.0 Ldh_forward continuous
-1.0 Ldh_backward continuous
-2.0 NOX_forward continuous
2.0 NOX_backward continuous
-1.0 UPRT_forward continuous
1.0 UPRT_backward continuous
1.0 UraTransport_forward continuous
-1.0 UraTransport_backward continuous
4972350.0Metabolism_net_rxn continuous
Pi[c] 0.00E+00 0.00E+00
--- terms ---
1.0 AlaAbcTransport continuous
1.0 ArgAbcTransport continuous
1.0 AsnAbcTransport continuous
1.0 AspAbcTransport continuous
1.0 CysAbcTransport continuous
1.0 GlnAbcTransport continuous
1.0 GluAbcTransport continuous
1.0 GlyAbcTransport continuous
1.0 HisAbcTransport continuous
1.0 IleAbcTransport continuous
1.0 LeuAbcTransport continuous
1.0 LysAbcTransport continuous
1.0 MetAbcTransport continuous
1.0 PheAbcTransport continuous
2.0 PiAbcTransport continuous
2.0 Ppa continuous
1.0 ProAbcTransport continuous
1.0 SerAbcTransport continuous
1.0 ThrAbcTransport continuous
1.0 TrpAbcTransport continuous
1.0 TyrAbcTransport continuous
1.0 ValAbcTransport continuous
-1.0 GapDH_forward continuous
1.0 GapDH_backward continuous
471096.2Metabolism_net_rxn continuous
ArgArg[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 ArgAbcTransport continuous
1.0 __dfba_ex_Metabolism_ArgArg_e_forward continuous
-1.0 __dfba_ex_Metabolism_ArgArg_e_backward continuous
ArgArg[c] 0.00E+00 0.00E+00
--- terms ---
1.0 ArgAbcTransport continuous
-1.0 Dipeptidase_Arg continuous
AsnAsn[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 AsnAbcTransport continuous
1.0 __dfba_ex_Metabolism_AsnAsn_e_forward continuous
-1.0 __dfba_ex_Metabolism_AsnAsn_e_backward continuous
AsnAsn[c] 0.00E+00 0.00E+00
--- terms ---
1.0 AsnAbcTransport continuous
-1.0 Dipeptidase_Asn continuous
AspAsp[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 AspAbcTransport continuous
1.0 __dfba_ex_Metabolism_AspAsp_e_forward continuous
-1.0 __dfba_ex_Metabolism_AspAsp_e_backward continuous
AspAsp[c] 0.00E+00 0.00E+00
--- terms ---
1.0 AspAbcTransport continuous
-1.0 Dipeptidase_Asp continuous
CysCys[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 CysAbcTransport continuous
1.0 __dfba_ex_Metabolism_CysCys_e_forward continuous
-1.0 __dfba_ex_Metabolism_CysCys_e_backward continuous
CysCys[c] 0.00E+00 0.00E+00
--- terms ---
1.0 CysAbcTransport continuous
-1.0 Dipeptidase_Cys continuous
ALA[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Ala continuous
-34190.38Metabolism_net_rxn continuous
ARG[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Arg continuous
-40890.38Metabolism_net_rxn continuous
ASN[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Asn continuous
-23190.38Metabolism_net_rxn continuous
ASP[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Asp continuous
-24290.38Metabolism_net_rxn continuous
CYS[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Cys continuous
-22290.38Metabolism_net_rxn continuous
GlnGln[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Gln continuous
1.0 GlnAbcTransport continuous
GLN[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Gln continuous
-24690.38Metabolism_net_rxn continuous
GluGlu[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Glu continuous
1.0 GluAbcTransport continuous
GLU[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Glu continuous
-22690.38Metabolism_net_rxn continuous
GlyGly[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Gly continuous
1.0 GlyAbcTransport continuous
GLY[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Gly continuous
-31190.38Metabolism_net_rxn continuous
HisHis[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_His continuous
1.0 HisAbcTransport continuous
HIS[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_His continuous
-21590.38Metabolism_net_rxn continuous
IleIle[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Ile continuous
1.0 IleAbcTransport continuous
ILE[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Ile continuous
-29290.38Metabolism_net_rxn continuous
LeuLeu[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Leu continuous
1.0 LeuAbcTransport continuous
LEU[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Leu continuous
-41190.38Metabolism_net_rxn continuous
LysLys[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Lys continuous
1.0 LysAbcTransport continuous
LYS[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Lys continuous
-21990.38Metabolism_net_rxn continuous
MetMet[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Met continuous
1.0 MetAbcTransport continuous
MET[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Met continuous
-21390.38Metabolism_net_rxn continuous
PhePhe[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Phe continuous
1.0 PheAbcTransport continuous
PHE[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Phe continuous
-23890.38Metabolism_net_rxn continuous
ProPro[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Pro continuous
1.0 ProAbcTransport continuous
PRO[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Pro continuous
-34390.38Metabolism_net_rxn continuous
SerSer[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Ser continuous
1.0 SerAbcTransport continuous
SER[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Ser continuous
-44490.38Metabolism_net_rxn continuous
ThrThr[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Thr continuous
1.0 ThrAbcTransport continuous
THR[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Thr continuous
-36190.38Metabolism_net_rxn continuous
TrpTrp[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Trp continuous
1.0 TrpAbcTransport continuous
TRP[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Trp continuous
-22190.38Metabolism_net_rxn continuous
TyrTyr[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Tyr continuous
1.0 TyrAbcTransport continuous
TYR[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Tyr continuous
-21990.38Metabolism_net_rxn continuous
ValVal[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Dipeptidase_Val continuous
1.0 ValAbcTransport continuous
VAL[c] 0.00E+00 0.00E+00
--- terms ---
2.0 Dipeptidase_Val continuous
-33790.38Metabolism_net_rxn continuous
GLC[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 GlcPtsTransport continuous
1.0 __dfba_ex_Metabolism_GLC_e_forward continuous
-1.0 __dfba_ex_Metabolism_GLC_e_backward continuous
PEP[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 GlcPtsTransport continuous
-1.0 Pyk_ATP continuous
-1.0 Pyk_CTP continuous
-1.0 Pyk_GTP continuous
-1.0 PykUDP continuous
1.0 Eno_forward continuous
-1.0 Eno_backward continuous
G6P[c] 0.00E+00 0.00E+00
--- terms ---
1.0 GlcPtsTransport continuous
-1.0 Pgi_forward continuous
1.0 Pgi_backward continuous
PYR[c] 0.00E+00 0.00E+00
--- terms ---
1.0 GlcPtsTransport continuous
1.0 Pyk_ATP continuous
1.0 Pyk_CTP continuous
1.0 Pyk_GTP continuous
1.0 PykUDP continuous
1.0 Ldh_forward continuous
-1.0 Ldh_backward continuous
GlnGln[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 GlnAbcTransport continuous
1.0 __dfba_ex_Metabolism_GlnGln_e_forward continuous
-1.0 __dfba_ex_Metabolism_GlnGln_e_backward continuous
GluGlu[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 GluAbcTransport continuous
1.0 __dfba_ex_Metabolism_GluGlu_e_forward continuous
-1.0 __dfba_ex_Metabolism_GluGlu_e_backward continuous
GlyGly[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 GlyAbcTransport continuous
1.0 __dfba_ex_Metabolism_GlyGly_e_forward continuous
-1.0 __dfba_ex_Metabolism_GlyGly_e_backward continuous
GN[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 GnTransport continuous
1.0 __dfba_ex_Metabolism_GN_e_forward continuous
-1.0 __dfba_ex_Metabolism_GN_e_backward continuous
H[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 GnTransport continuous
1.0 LacTransport continuous
-1.0 AdnTransport_forward continuous
1.0 AdnTransport_backward continuous
-1.0 CytdTransport_forward continuous
1.0 CytdTransport_backward continuous
-1.0 HTransport_forward continuous
1.0 HTransport_backward continuous
-1.0 UraTransport_forward continuous
1.0 UraTransport_backward continuous
1.0 __dfba_ex_Metabolism_H_e_forward continuous
-1.0 __dfba_ex_Metabolism_H_e_backward continuous
GN[c] 0.00E+00 0.00E+00
--- terms ---
1.0 GnTransport continuous
1.0 HPRT_forward continuous
-1.0 HPRT_backward continuous
HisHis[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 HisAbcTransport continuous
1.0 __dfba_ex_Metabolism_HisHis_e_forward continuous
-1.0 __dfba_ex_Metabolism_HisHis_e_backward continuous
IleIle[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 IleAbcTransport continuous
1.0 __dfba_ex_Metabolism_IleIle_e_forward continuous
-1.0 __dfba_ex_Metabolism_IleIle_e_backward continuous
LAC[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 LacTransport continuous
-1.0 Ldh_forward continuous
1.0 Ldh_backward continuous
LAC[e] 0.00E+00 0.00E+00
--- terms ---
1.0 LacTransport continuous
1.0 __dfba_ex_Metabolism_LAC_e_forward continuous
-1.0 __dfba_ex_Metabolism_LAC_e_backward continuous
LeuLeu[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 LeuAbcTransport continuous
1.0 __dfba_ex_Metabolism_LeuLeu_e_forward continuous
-1.0 __dfba_ex_Metabolism_LeuLeu_e_backward continuous
LysLys[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 LysAbcTransport continuous
1.0 __dfba_ex_Metabolism_LysLys_e_forward continuous
-1.0 __dfba_ex_Metabolism_LysLys_e_backward continuous
MetMet[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 MetAbcTransport continuous
1.0 __dfba_ex_Metabolism_MetMet_e_forward continuous
-1.0 __dfba_ex_Metabolism_MetMet_e_backward continuous
F6P[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Pfk_ATP continuous
-1.0 Pfk_GTP continuous
-1.0 Pfk_UTP continuous
1.0 Pgi_forward continuous
-1.0 Pgi_backward continuous
1.0 Tal_forward continuous
-1.0 Tal_backward continuous
-1.0 Tkl_F6P_forward continuous
1.0 Tkl_F6P_backward continuous
FDP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Pfk_ATP continuous
1.0 Pfk_GTP continuous
1.0 Pfk_UTP continuous
-1.0 Fba_FDP_forward continuous
1.0 Fba_FDP_backward continuous
GTP[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Pfk_GTP continuous
1.0 Pyk_GTP continuous
-1.0 AK_GTP_forward continuous
1.0 AK_GTP_backward continuous
-1.0 Pgk_GTP_forward continuous
1.0 Pgk_GTP_backward continuous
-1728316.0Metabolism_net_rxn continuous
GDP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Pfk_GTP continuous
-1.0 Pyk_GTP continuous
1.0 AK_GTP_forward continuous
-1.0 AK_GTP_backward continuous
1.0 GUK_GMP_forward continuous
-1.0 GUK_GMP_backward continuous
1.0 Pgk_GTP_forward continuous
-1.0 Pgk_GTP_backward continuous
581419.2Metabolism_net_rxn continuous
UTP[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Pfk_UTP continuous
1.0 PykUDP continuous
-1132896.0Metabolism_net_rxn continuous
UDP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Pfk_UTP continuous
-1.0 PykUDP continuous
1.0 UmpK_forward continuous
-1.0 UmpK_backward continuous
PhePhe[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 PheAbcTransport continuous
1.0 __dfba_ex_Metabolism_PhePhe_e_forward continuous
-1.0 __dfba_ex_Metabolism_PhePhe_e_backward continuous
Pi[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 PiAbcTransport continuous
1.0 __dfba_ex_Metabolism_Pi_e_forward continuous
-1.0 __dfba_ex_Metabolism_Pi_e_backward continuous
PPi[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Ppa continuous
-1.0 APRT_forward continuous
1.0 APRT_backward continuous
-1.0 HPRT_forward continuous
1.0 HPRT_backward continuous
-1.0 UPRT_forward continuous
1.0 UPRT_backward continuous
4381069.0Metabolism_net_rxn continuous
ProPro[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 ProAbcTransport continuous
1.0 __dfba_ex_Metabolism_ProPro_e_forward continuous
-1.0 __dfba_ex_Metabolism_ProPro_e_backward continuous
R5P[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 PRPS continuous
-1.0 RpiA_forward continuous
1.0 RpiA_backward continuous
1.0 Tkl_S7P_forward continuous
-1.0 Tkl_S7P_backward continuous
AMP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 PRPS continuous
-1.0 AK_AMP_forward continuous
1.0 AK_AMP_backward continuous
-1.0 AK_GTP_forward continuous
1.0 AK_GTP_backward continuous
-1.0 APRT_forward continuous
1.0 APRT_backward continuous
1035619.0Metabolism_net_rxn continuous
PRPP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 PRPS continuous
1.0 APRT_forward continuous
-1.0 APRT_backward continuous
1.0 HPRT_forward continuous
-1.0 HPRT_backward continuous
1.0 UPRT_forward continuous
-1.0 UPRT_backward continuous
CDP[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Pyk_CTP continuous
1.0 CmpK_CMP_forward continuous
-1.0 CmpK_CMP_backward continuous
CTP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Pyk_CTP continuous
-1164906.0Metabolism_net_rxn continuous
SerSer[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 SerAbcTransport continuous
1.0 __dfba_ex_Metabolism_SerSer_e_forward continuous
-1.0 __dfba_ex_Metabolism_SerSer_e_backward continuous
ThrThr[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 ThrAbcTransport continuous
1.0 __dfba_ex_Metabolism_ThrThr_e_forward continuous
-1.0 __dfba_ex_Metabolism_ThrThr_e_backward continuous
TrpTrp[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 TrpAbcTransport continuous
1.0 __dfba_ex_Metabolism_TrpTrp_e_forward continuous
-1.0 __dfba_ex_Metabolism_TrpTrp_e_backward continuous
TyrTyr[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 TyrAbcTransport continuous
1.0 __dfba_ex_Metabolism_TyrTyr_e_forward continuous
-1.0 __dfba_ex_Metabolism_TyrTyr_e_backward continuous
CYTD[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Uck_CYTD continuous
1.0 CytdTransport_forward continuous
-1.0 CytdTransport_backward continuous
CMP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Uck_CYTD continuous
-1.0 CmpK_CMP_forward continuous
1.0 CmpK_CMP_backward continuous
1098019.0Metabolism_net_rxn continuous
URI[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Uck_URI continuous
UMP[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Uck_URI continuous
-1.0 UmpK_forward continuous
1.0 UmpK_backward continuous
-1.0 UPRT_forward continuous
1.0 UPRT_backward continuous
1066339.0Metabolism_net_rxn continuous
ValVal[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 ValAbcTransport continuous
1.0 __dfba_ex_Metabolism_ValVal_e_forward continuous
-1.0 __dfba_ex_Metabolism_ValVal_e_backward continuous
AD[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 AdnTransport_forward continuous
1.0 AdnTransport_backward continuous
1.0 __dfba_ex_Metabolism_AD_e_forward continuous
-1.0 __dfba_ex_Metabolism_AD_e_backward continuous
AD[c] 0.00E+00 0.00E+00
--- terms ---
1.0 AdnTransport_forward continuous
-1.0 AdnTransport_backward continuous
1.0 APRT_forward continuous
-1.0 APRT_backward continuous
CO2[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 CO2Transport_forward continuous
1.0 CO2Transport_backward continuous
1.0 __dfba_ex_Metabolism_CO2_e_forward continuous
-1.0 __dfba_ex_Metabolism_CO2_e_backward continuous
CO2[c] 0.00E+00 0.00E+00
--- terms ---
1.0 CO2Transport_forward continuous
-1.0 CO2Transport_backward continuous
CYTD[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 CytdTransport_forward continuous
1.0 CytdTransport_backward continuous
1.0 __dfba_ex_Metabolism_CYTD_e_forward continuous
-1.0 __dfba_ex_Metabolism_CYTD_e_backward continuous
G2P[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Eno_forward continuous
1.0 Eno_backward continuous
-1.0 Gpm_forward continuous
1.0 Gpm_backward continuous
T3P1[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Fba_FDP_forward continuous
-1.0 Fba_FDP_backward continuous
-1.0 GapDH_forward continuous
1.0 GapDH_backward continuous
-1.0 Tal_forward continuous
1.0 Tal_backward continuous
-1.0 Tim_forward continuous
1.0 Tim_backward continuous
-1.0 Tkl_F6P_forward continuous
1.0 Tkl_F6P_backward continuous
-1.0 Tkl_S7P_forward continuous
1.0 Tkl_S7P_backward continuous
T3P2[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Fba_FDP_forward continuous
-1.0 Fba_FDP_backward continuous
1.0 Tim_forward continuous
-1.0 Tim_backward continuous
NAD[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 GapDH_forward continuous
1.0 GapDH_backward continuous
-1.0 Ldh_forward continuous
1.0 Ldh_backward continuous
2.0 NOX_forward continuous
-2.0 NOX_backward continuous
DPG[c] 0.00E+00 0.00E+00
--- terms ---
1.0 GapDH_forward continuous
-1.0 GapDH_backward continuous
1.0 Pgk_ATP_forward continuous
-1.0 Pgk_ATP_backward continuous
1.0 Pgk_GTP_forward continuous
-1.0 Pgk_GTP_backward continuous
NADH[c] 0.00E+00 0.00E+00
--- terms ---
1.0 GapDH_forward continuous
-1.0 GapDH_backward continuous
1.0 Ldh_forward continuous
-1.0 Ldh_backward continuous
-2.0 NOX_forward continuous
2.0 NOX_backward continuous
G3P[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Gpm_forward continuous
-1.0 Gpm_backward continuous
-1.0 Pgk_ATP_forward continuous
1.0 Pgk_ATP_backward continuous
-1.0 Pgk_GTP_forward continuous
1.0 Pgk_GTP_backward continuous
GMP[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 GUK_GMP_forward continuous
1.0 GUK_GMP_backward continuous
-1.0 HPRT_forward continuous
1.0 HPRT_backward continuous
1052899.0Metabolism_net_rxn continuous
H2O[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 H2OTransport_forward continuous
1.0 H2OTransport_backward continuous
1.0 __dfba_ex_Metabolism_H2O_e_forward continuous
-1.0 __dfba_ex_Metabolism_H2O_e_backward continuous
O2[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 NOX_forward continuous
1.0 NOX_backward continuous
1.0 O2Transport_forward continuous
-1.0 O2Transport_backward continuous
O2[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 O2Transport_forward continuous
1.0 O2Transport_backward continuous
1.0 __dfba_ex_Metabolism_O2_e_forward continuous
-1.0 __dfba_ex_Metabolism_O2_e_backward continuous
RL5P[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Rpe_forward continuous
1.0 Rpe_backward continuous
1.0 RpiA_forward continuous
-1.0 RpiA_backward continuous
X5P[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Rpe_forward continuous
-1.0 Rpe_backward continuous
1.0 Tkl_F6P_forward continuous
-1.0 Tkl_F6P_backward continuous
1.0 Tkl_S7P_forward continuous
-1.0 Tkl_S7P_backward continuous
S7P[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 Tal_forward continuous
1.0 Tal_backward continuous
-1.0 Tkl_S7P_forward continuous
1.0 Tkl_S7P_backward continuous
E4P[c] 0.00E+00 0.00E+00
--- terms ---
1.0 Tal_forward continuous
-1.0 Tal_backward continuous
1.0 Tkl_F6P_forward continuous
-1.0 Tkl_F6P_backward continuous
URA[c] 0.00E+00 0.00E+00
--- terms ---
1.0 UPRT_forward continuous
-1.0 UPRT_backward continuous
1.0 UraTransport_forward continuous
-1.0 UraTransport_backward continuous
URA[e] 0.00E+00 0.00E+00
--- terms ---
-1.0 UraTransport_forward continuous
1.0 UraTransport_backward continuous
1.0 __dfba_ex_Metabolism_URA_e_forward continuous
-1.0 __dfba_ex_Metabolism_URA_e_backward continuous
objective direction: max
--- objective terms ---
1.0 Metabolism_net_rxn continuous
1.0 AdnTransport_forward continuous
-1.0 AdnTransport_backward continuous
--- END Scaled WC Sim dFBA conv opt model ---
Version identifier: 12.10.0.0 | 2019-11-26 | 843d4de
CPXPARAM_Read_Scale 1
CPXPARAM_Read_DataCheck 1
CPXPARAM_Emphasis_Numerical 1
Tried aggregator 1 time.
LP Presolve eliminated 113 rows and 88 columns.
Aggregator did 63 substitutions.
Reduced LP has 22 rows, 27 columns, and 114 nonzeros.
Presolve time = 0.00 sec. (0.21 ticks)
Initializing dual steep norms . . .
Iteration log . . .
Iteration: 1 Dual objective = 28.343809
--- time 0: solution ---
109 non-zero reaction fluxes
AlaAbcTransport 0.00053
ArgAbcTransport 0.00064
AsnAbcTransport 0.00036
AspAbcTransport 0.00038
CysAbcTransport 0.00035
Dipeptidase_Ala 0.00053
Dipeptidase_Arg 0.00064
Dipeptidase_Asn 0.00036
Dipeptidase_Asp 0.00038
Dipeptidase_Cys 0.00035
Dipeptidase_Gln 0.00038
Dipeptidase_Glu 0.00035
Dipeptidase_Gly 0.00049
Dipeptidase_His 0.00034
Dipeptidase_Ile 0.00046
Dipeptidase_Leu 0.00064
Dipeptidase_Lys 0.00034
Dipeptidase_Met 0.00033
Dipeptidase_Phe 0.00037
Dipeptidase_Pro 0.00054
Dipeptidase_Ser 0.00069
Dipeptidase_Thr 0.00056
Dipeptidase_Trp 0.00035
Dipeptidase_Tyr 0.00034
Dipeptidase_Val 0.00053
GlcPtsTransport 0.18
GlnAbcTransport 0.00038
GluAbcTransport 0.00035
GlyAbcTransport 0.00049
GnTransport 0.0029
HisAbcTransport 0.00034
IleAbcTransport 0.00046
LacTransport 0.36
LeuAbcTransport 0.00064
LysAbcTransport 0.00034
MetAbcTransport 0.00033
Pfk_GTP 0.18
PheAbcTransport 0.00037
PiAbcTransport 0.023
Ppa 0.14
ProAbcTransport 0.00054
PRPS 0.0071
Pyk_ATP 0.1
Pyk_CTP 0.036
PykUDP 0.035
SerAbcTransport 0.00069
ThrAbcTransport 0.00056
TrpAbcTransport 0.00035
TyrAbcTransport 0.00034
Uck_CYTD 0.0021
ValAbcTransport 0.00053
AdnTransport_forward 0.0021
AK_AMP_backward 1.8e+04
AK_GTP_forward 1.8e+04
APRT_backward 0.0021
CmpK_CMP_forward 0.036
CytdTransport_forward 0.0021
Eno_forward 0.36
Fba_FDP_forward 0.18
GapDH_forward 0.36
Gpm_backward 0.36
GUK_GMP_forward 0.036
H2OTransport_forward 47
HPRT_backward 0.0029
HTransport_forward 0.14
Ldh_backward 0.36
Pgi_forward 0.18
Pgk_ATP_forward 1.8e+04
Pgk_GTP_backward 1.8e+04
Rpe_backward 0.0047
RpiA_backward 0.0047
Tal_backward 0.0024
Tim_backward 0.18
Tkl_F6P_forward 0.0024
Tkl_S7P_forward 0.0024
UmpK_forward 0.035
UPRT_backward 0.0021
UraTransport_forward 0.0021
__dfba_ex_Metabolism_LysLys_e_forward 0.00034
__dfba_ex_Metabolism_TrpTrp_e_forward 0.00035
__dfba_ex_Metabolism_LAC_e_forward 28
__dfba_ex_Metabolism_LAC_e_backward 28
__dfba_ex_Metabolism_MetMet_e_forward 0.00033
__dfba_ex_Metabolism_ThrThr_e_forward 0.00056
__dfba_ex_Metabolism_LeuLeu_e_forward 0.00064
__dfba_ex_Metabolism_GluGlu_e_forward 0.00035
__dfba_ex_Metabolism_URA_e_forward 0.0021
__dfba_ex_Metabolism_PhePhe_e_forward 0.00037
__dfba_ex_Metabolism_Pi_e_forward 0.023
__dfba_ex_Metabolism_CYTD_e_forward 0.0021
__dfba_ex_Metabolism_TyrTyr_e_forward 0.00034
__dfba_ex_Metabolism_AspAsp_e_forward 0.00038
__dfba_ex_Metabolism_H_e_backward 0.21
__dfba_ex_Metabolism_GN_e_forward 0.0029
__dfba_ex_Metabolism_H2O_e_forward 47
__dfba_ex_Metabolism_SerSer_e_forward 0.00069
__dfba_ex_Metabolism_IleIle_e_forward 0.00046
__dfba_ex_Metabolism_AD_e_forward 0.0021
__dfba_ex_Metabolism_HisHis_e_forward 0.00034
__dfba_ex_Metabolism_ProPro_e_forward 0.00054
__dfba_ex_Metabolism_ArgArg_e_forward 0.00064
__dfba_ex_Metabolism_AlaAla_e_forward 0.00053
__dfba_ex_Metabolism_GlnGln_e_forward 0.00038
__dfba_ex_Metabolism_AsnAsn_e_forward 0.00036
__dfba_ex_Metabolism_ValVal_e_forward 0.00053
__dfba_ex_Metabolism_GLC_e_forward 0.18
__dfba_ex_Metabolism_CysCys_e_forward 0.00035
__dfba_ex_Metabolism_GlyGly_e_forward 0.00049
Metabolism_net_rxn 3.1e-08
objective 0.0021
|
|
|
tests.test_model_utilities.TestModelUtilities |
test_sample_copy_num_from_c... |
tests/test_model_utilities.py |
60 |
Pass |
0.810 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_scale_conv_opt_model |
tests/submodels/test_dfba.py |
566 |
Pass |
0.351 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_schedule_next_fba_event |
tests/submodels/test_dfba.py |
785 |
Pass |
0.441 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_schedule_next_ode_event |
tests/submodels/test_odes.py |
213 |
Pass |
0.132 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestSedMlImportExport |
test_sedml_import_export |
tests/test_sim_config.py |
262 |
Pass |
0.004 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_metadata.TestWCSimulationMetadata |
test_semantically_equal |
tests/test_metadata.py |
75 |
Pass |
4.069 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_run_results.TestRunResults |
test_semantically_equal |
tests/test_run_results.py |
215 |
Pass |
1.150 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.test_sim_config.TestWCSimulationConfig |
test_semantically_equal |
tests/test_sim_config.py |
131 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_transformations.TestSetStdDe... |
test_SetStdDevsToZero |
tests/testing/test_transfor... |
33 |
Pass |
0.420 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_set_simultaneous_execu... |
tests/test_multialgorithm_s... |
194 |
Pass |
0.485 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_set_up_dfba_submodel |
tests/submodels/test_dfba.py |
255 |
Pass |
0.879 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_set_up_ode_submodel |
tests/submodels/test_odes.py |
81 |
Pass |
0.083 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_set_up_optimizations |
tests/submodels/test_odes.py |
66 |
Pass |
0.085 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_set_up_optimizations |
tests/submodels/test_dfba.py |
237 |
Pass |
0.365 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_metadata.TestWCSimulationMetadata |
test_set_wc_model_repo |
tests/test_metadata.py |
61 |
Pass |
3.666 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestDynamicCompon... |
test_simple_dynamic_express... |
tests/test_dynamic_componen... |
238 |
Pass |
0.009 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_nrm.TestNrmSubmodel |
test_simulate |
tests/submodels/test_nrm.py |
170 |
Pass |
7.339 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dynamic_submodel.TestDsaSu... |
test_simulate_deterministic... |
tests/submodels/test_dynami... |
297 |
Pass |
0.731 |
Result type | |
Message | |
Details | |
Standard output | Simulated 100 events
Caching statistics:
Class HIT MISS HIT_RATIO FLUSH_HIT FLUSH_MISS FLUSH_HIT_RATIO
DynamicFunction 0 0 nan 0 100 0.00
DynamicStopCondition 0 0 nan 0 0 nan
DynamicObservable 0 0 nan 0 100 0.00
DynamicDfbaObjective 0 0 nan 0 0 nan
DynamicRateLaw 100 1 0.99 0 0 nan
DynamicCompartment 0 1 0.00 1 99 0.01
|
Standard error | N/A% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
0% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:25
100% 100/100 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.test_simulation.TestSimulation |
test_simulate_wo_output_files |
tests/test_simulation.py |
64 |
Pass |
1.086 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestAccessSpecie... |
test_simulation |
tests/test_species_populati... |
195 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | AccessSpeciesPopulations isn't being used |
Details | tests/test_species_populations.py:195: AccessSpeciesPopulations isn't being used |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestWCSimulationConfig |
test_simulation_configuration |
tests/test_sim_config.py |
31 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_sim_config.TestWCSimulationConfig |
test_simulation_configurati... |
tests/test_sim_config.py |
87 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_simulation.TestSimulation |
test_simulation_errors |
tests/test_simulation.py |
59 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_simulation.TestSimulation |
test_simulation_model_in_file |
tests/test_simulation.py |
52 |
Pass |
1.172 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_simulation.TestSimulation |
test_simulation_model_in_me... |
tests/test_simulation.py |
55 |
Pass |
0.703 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_main.CliTestCase |
test_simulation_run |
tests/test_main.py |
61 |
Pass |
1.384 |
Result type | |
Message | |
Details | |
Standard output |
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R01 continuous 0.00E+00 1.00E+00
R05 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 2.00E-01
R08 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 3.00E-01
R11 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R16 continuous 0.00E+00 1.00E+03
R17 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+01 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+01 None
--- terms ---
-1.0 EX_Y continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R06 continuous
-1.0 R07 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R08 continuous
1.0 R11 continuous
-1.0 R12 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R09 continuous
-1.0 R10 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R12 continuous
-1.0 R13 continuous
-1.0 R16 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R22 continuous
-1.0 R24 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R24 continuous
0.5 R25 continuous
-1.0 R26 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R20_forward continuous
-1.0 R20_backward continuous
-1.0 R21_forward continuous
1.0 R21_backward continuous
objective direction: max
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
26 non-zero reaction fluxes
R01 1
R05 0.5
R06 0.2
R07 0.2
R08 0.2
R09 0.3
R10 0.3
R11 0.3
R12 0.5
R13 0.5
R15 0.5
R22 0.5
R24 0.5
R25 0.5
R26 0.75
R02_backward 1e+03
R03_forward 1e+03
R04_forward 1e+03
R14_backward 1e+03
R19_forward 1e+03
R20_forward 1e+03
R21_forward 1e+03
EX_T 0.5
EX_U 0.5
EX_X 1
EX_Y 0.75
objective 0.75
|
Standard error | N/A% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/100 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 100/100 (max_time) |################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.examples.test_simulation_run.TestSimulati... |
test_simulation_run |
tests/examples/test_simulat... |
15 |
Pass |
2.755 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.TestVerificationTestR... |
test_slope_of_predictions |
tests/testing/test_verify.py |
164 |
Pass |
0.316 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_odes.TestOdeSubmodel |
test_solver_lock |
tests/submodels/test_odes.py |
73 |
Pass |
0.122 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_species_id_conversions |
tests/submodels/test_dfba.py |
386 |
Pass |
0.429 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestSpeciesPopul... |
test_species_population_cache |
tests/test_species_populati... |
718 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestSpeciesPopul... |
test_species_population_cac... |
tests/test_species_populati... |
727 |
Pass |
0.004 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_species_stochastic_rou... |
tests/test_species_populati... |
1218 |
Pass |
0.016 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_ssa.TestSsaSubmodel |
test_SSA_submodel_init |
tests/submodels/test_ssa.py |
40 |
Pass |
0.082 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestAccessSpecie... |
test_stable_simulation |
tests/test_species_populati... |
224 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | AccessSpeciesPopulations isn't being used |
Details | tests/test_species_populations.py:224: AccessSpeciesPopulations isn't being used |
Standard output | |
Standard error | |
|
|
tests.submodels.test_ssa.TestSsaSubmodel |
test_static_SSA_submodel_me... |
tests/submodels/test_ssa.py |
45 |
Pass |
0.375 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_dynamic_components.TestInitializedDy... |
test_str |
tests/test_dynamic_componen... |
595 |
Pass |
0.025 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_multialgorithm_simulation.TestMultia... |
test_str |
tests/test_multialgorithm_s... |
299 |
Pass |
0.781 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestLocalSpecies... |
test_temp_lsp_populations |
tests/test_species_populati... |
456 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_temp_populations |
tests/test_species_populati... |
1186 |
Pass |
0.001 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_text_output |
tests/test_species_populati... |
1195 |
Pass |
0.002 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.utils.test_time_ordered_list.TestTimeOrde... |
test_time_ordered_list |
tests/utils/test_time_order... |
65 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.utils.test_time_ordered_list.TestTimeOrde... |
test_time_ordered_list_perf... |
tests/utils/test_time_order... |
193 |
Pass |
2.272 |
Result type | |
Message | |
Details | |
Standard output |
# TOL items E[time(find)] (μsec)
1 2.84
10 5.00
100 23.23
1000 191.04
|
Standard error | |
|
|
tests.testing.test_verify.TestVerificationSuite |
test_tolerance_ranges_for_s... |
tests/testing/test_verify.py |
820 |
Pass |
0.003 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_unscale_conv_opt_solution |
tests/submodels/test_dfba.py |
611 |
Pass |
0.431 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.submodels.test_dfba.TestDfbaSubmodel |
test_update_bounds |
tests/submodels/test_dfba.py |
492 |
Pass |
0.395 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.test_species_populations.TestDynamicSpeci... |
test_validations |
tests/test_species_populati... |
854 |
Pass |
0.004 |
Result type | |
Message | |
Details | |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.RunVerificationSuite |
test_verification_determini... |
tests/testing/test_verify.py |
1017 |
Pass |
35.004 |
Result type | |
Message | |
Details | |
Standard output | Verifying CONTINUOUS_DETERMINISTIC case 00001
Verifying CONTINUOUS_DETERMINISTIC case 00002
Verifying CONTINUOUS_DETERMINISTIC case 00003
Verifying CONTINUOUS_DETERMINISTIC case 00004
Verifying CONTINUOUS_DETERMINISTIC case 00005
Verifying CONTINUOUS_DETERMINISTIC case 00006
Verifying CONTINUOUS_DETERMINISTIC case 00010
Verifying CONTINUOUS_DETERMINISTIC case 00014
Verifying CONTINUOUS_DETERMINISTIC case 00015
Verifying CONTINUOUS_DETERMINISTIC case 00017
Verifying CONTINUOUS_DETERMINISTIC case 00018
Verifying CONTINUOUS_DETERMINISTIC case 00019
Verifying CONTINUOUS_DETERMINISTIC case 00020
Verifying CONTINUOUS_DETERMINISTIC case 00021
Verifying CONTINUOUS_DETERMINISTIC case 00022
Verifying CONTINUOUS_DETERMINISTIC case 00028
Verifying CONTINUOUS_DETERMINISTIC case 00054
success(es):
00001 CASE_VERIFIED
00002 CASE_VERIFIED
00003 CASE_VERIFIED
00004 CASE_VERIFIED
00005 CASE_VERIFIED
00006 CASE_VERIFIED
00010 CASE_VERIFIED
00014 CASE_VERIFIED
00015 CASE_VERIFIED
00017 CASE_VERIFIED
00018 CASE_VERIFIED
00019 CASE_VERIFIED
00020 CASE_VERIFIED
00021 CASE_VERIFIED
00022 CASE_VERIFIED
00028 CASE_VERIFIED
00054 CASE_VERIFIED
|
Standard error | N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
10% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 8 days, 22:19:48
20% 1/5 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
34% 1/5 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 2/5 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
74% 3/5 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 4/5 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
94% 4/5 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
10% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 10 days, 0:47:15
18% 0/5 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
28% 1/5 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
38% 1/5 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 2/5 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 3/5 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 3/5 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 4/5 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
98% 4/5 (max_time) |################### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
16% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 8 days, 23:58:53
32% 1/5 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 2/5 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 3/5 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 3/5 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 4/5 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
94% 4/5 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: 24 days, 10:23:15
18% 1/10 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
34% 3/10 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
50% 5/10 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
66% 6/10 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 8/10 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 10/10 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
14% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 8 days, 19:26:21
28% 1/5 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
42% 2/5 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 2/5 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 3/5 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 4/5 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
98% 4/5 (max_time) |################### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
26% 1/5 (max_time) |### | Elapsed Time: 0:00:00 ETA: 7 days, 16:17:38
44% 2/5 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
90% 4/5 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/5 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
10% 0/5 (max_time) |# | Elapsed Time: 0:00:00 ETA: 8 days, 2:52:52
20% 1/5 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 1/5 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 2/5 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 2/5 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
58% 2/5 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 3/5 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 3/5 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 3/5 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 4/5 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
98% 4/5 (max_time) |################### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 5/5 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/20 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/20 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
10% 2/20 (max_time) | | Elapsed Time: 0:00:00 ETA: 36 days, 10:43:12
18% 3/20 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 5/20 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
36% 7/20 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 9/20 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 11/20 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
66% 13/20 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
76% 15/20 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 17/20 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
96% 19/20 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 20/20 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/2 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/2 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
10% 0/2 (max_time) |# | Elapsed Time: 0:00:00 ETA: 4 days, 10:55:54
20% 0/2 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 0/2 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
40% 1/2 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
52% 1/2 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 1/2 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
74% 1/2 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 2/2 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
98% 2/2 (max_time) |################### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 2/2 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 4/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 103 days, 3:53:56
18% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
34% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
44% 22/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
74% 37/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 42/50 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
94% 47/50 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 103 days, 15:41:49
12% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
18% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
36% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
42% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 30/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
66% 33/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 36/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
80% 40/50 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
86% 43/50 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
92% 46/50 (max_time) |################ | Elapsed Time: 0:00:01 ETA: 0:00:00
98% 49/50 (max_time) |################# | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/8 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/8 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 0/8 (max_time) | | Elapsed Time: 0:00:00 ETA: 18 days, 10:36:00
14% 1/8 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
22% 1/8 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 2/8 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 3/8 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 4/8 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 4/8 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
68% 5/8 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
76% 6/8 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 6/8 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 7/8 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
98% 7/8 (max_time) |################### | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 8/8 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/12 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/12 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 0/12 (max_time) | | Elapsed Time: 0:00:00 ETA: 29 days, 7:26:11
13% 1/12 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
21% 2/12 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
30% 3/12 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
37% 4/12 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
46% 5/12 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
53% 6/12 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
62% 7/12 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
70% 8/12 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
75% 9/12 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 10/12 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 11/12 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 12/12 (max_time) |##################| Elapsed Time: 0:00:00 ETA: 00:00:00
100% 12/12 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: 20 days, 7:50:49
14% 1/10 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 2/10 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
38% 3/10 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
50% 5/10 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 6/10 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
78% 7/10 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
94% 9/10 (max_time) |################ | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 10/10 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/25 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/25 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
12% 3/25 (max_time) |# | Elapsed Time: 0:00:00 ETA: 59 days, 5:24:28
24% 6/25 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
36% 9/25 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 12/25 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 15/25 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 18/25 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
84% 21/25 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
96% 24/25 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 25/25 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/2 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/2 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
18% 0/2 (max_time) |## | Elapsed Time: 0:00:00 ETA: 3 days, 4:02:17
44% 0/2 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 1/2 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
92% 1/2 (max_time) |################## | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 2/2 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
8% 0/10 (max_time) | | Elapsed Time: 0:00:00 ETA: 18 days, 23:45:46
16% 1/10 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 2/10 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 3/10 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:00
40% 4/10 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 4/10 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
56% 5/10 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 6/10 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
72% 7/10 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
80% 8/10 (max_time) |############## | Elapsed Time: 0:00:00 ETA: 0:00:00
88% 8/10 (max_time) |############### | Elapsed Time: 0:00:00 ETA: 0:00:00
96% 9/10 (max_time) |################# | Elapsed Time: 0:00:00 ETA: 0:00:00
100% 10/10 (max_time) |##################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.testing.test_verify.RunVerificationSuite |
test_verification_flux_bala... |
tests/testing/test_verify.py |
1023 |
Pass |
5.710 |
Result type | |
Message | |
Details | |
Standard output | Verifying DYNAMIC_FLUX_BALANCE_ANALYSIS case 01186
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: max
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
21 non-zero reaction fluxes
R16 1
R12 1
R07 1
R01 1
R17 1
R05 1
R06 1
R08 1
R18 1
R26 1
R24 1
R22 1
R14_forward 1e+03
R03_backward 1e+03
R02_forward 1e+03
R04_backward 1e+03
R19_backward 1e+03
R21_backward 1e+03
R20_backward 1e+03
EX_X 1
EX_Y 1
objective 1
Verifying DYNAMIC_FLUX_BALANCE_ANALYSIS case 01187
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
R16 continuous 0.00E+00 1.00E+03
R15 continuous 0.00E+00 1.00E+03
R12 continuous 0.00E+00 1.00E+03
R07 continuous 0.00E+00 1.00E+03
R13 continuous 0.00E+00 1.00E+03
R01 continuous 0.00E+00 1.00E+00
R17 continuous 0.00E+00 1.00E+03
R05 continuous 0.00E+00 1.00E+03
R10 continuous 0.00E+00 1.00E+03
R06 continuous 0.00E+00 1.00E+03
R09 continuous 0.00E+00 1.00E+03
R08 continuous 0.00E+00 1.00E+03
R11 continuous 0.00E+00 1.00E+03
R18 continuous 0.00E+00 1.00E+03
R26 continuous 0.00E+00 1.00E+03
R25 continuous 0.00E+00 1.00E+03
R24 continuous 0.00E+00 1.00E+03
R22 continuous 0.00E+00 1.00E+03
R14_forward continuous 0.00E+00 1.00E+03
R14_backward continuous 0.00E+00 1.00E+03
R03_forward continuous 0.00E+00 1.00E+03
R03_backward continuous 0.00E+00 1.00E+03
R02_forward continuous 0.00E+00 1.00E+03
R02_backward continuous 0.00E+00 1.00E+03
R04_forward continuous 0.00E+00 1.00E+03
R04_backward continuous 0.00E+00 1.00E+03
R19_forward continuous 0.00E+00 1.00E+03
R19_backward continuous 0.00E+00 1.00E+03
R23_forward continuous 0.00E+00 1.00E+03
R23_backward continuous 0.00E+00 1.00E+03
R21_forward continuous 0.00E+00 1.00E+03
R21_backward continuous 0.00E+00 1.00E+03
R20_forward continuous 0.00E+00 1.00E+03
R20_backward continuous 0.00E+00 1.00E+03
EX_T continuous 0.00E+00 None
EX_U continuous 0.00E+00 None
EX_X continuous 0.00E+00 None
EX_Y continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__U[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_U continuous
neg_pop_constr__Y[Cell] -1.00E+03 None
--- terms ---
-1.0 EX_Y continuous
J[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R16 continuous
1.0 R12 continuous
-1.0 R13 continuous
M[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R16 continuous
-1.0 R17 continuous
L[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R15 continuous
1.0 R14_forward continuous
-1.0 R14_backward continuous
1.0 R21_forward continuous
-1.0 R21_backward continuous
Q[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R15 continuous
1.0 R18 continuous
-1.0 R22 continuous
I[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R12 continuous
1.0 R08 continuous
1.0 R11 continuous
E[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R07 continuous
1.0 R06 continuous
F[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R07 continuous
-1.0 R08 continuous
K[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R13 continuous
-1.0 R14_forward continuous
1.0 R14_backward continuous
-1.0 R19_forward continuous
1.0 R19_backward continuous
X[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R01 continuous
1.0 EX_X continuous
A[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R01 continuous
-1.0 R25 continuous
-1.0 R03_forward continuous
1.0 R03_backward continuous
-1.0 R02_forward continuous
1.0 R02_backward continuous
N[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R17 continuous
-1.0 R18 continuous
B[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R05 continuous
1.0 R02_forward continuous
-1.0 R02_backward continuous
1.0 R04_forward continuous
-1.0 R04_backward continuous
D[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R05 continuous
-1.0 R06 continuous
-1.0 R09 continuous
G[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R10 continuous
1.0 R09 continuous
H[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R10 continuous
-1.0 R11 continuous
S[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R26 continuous
0.5 R25 continuous
1.0 R24 continuous
1.0 R23_forward continuous
-1.0 R23_backward continuous
Y[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R26 continuous
-1.0 EX_Y continuous
T[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R25 continuous
1.0 EX_T continuous
U[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R25 continuous
-1.0 EX_U continuous
R[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R24 continuous
1.0 R22 continuous
-1.0 R23_forward continuous
1.0 R23_backward continuous
C[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R03_forward continuous
-1.0 R03_backward continuous
-1.0 R04_forward continuous
1.0 R04_backward continuous
O[Cell] 0.00E+00 0.00E+00
--- terms ---
1.0 R19_forward continuous
-1.0 R19_backward continuous
-1.0 R20_forward continuous
1.0 R20_backward continuous
P[Cell] 0.00E+00 0.00E+00
--- terms ---
-1.0 R21_forward continuous
1.0 R21_backward continuous
1.0 R20_forward continuous
-1.0 R20_backward continuous
objective direction: min
--- objective terms ---
0.0 EX_T continuous
0.0 EX_U continuous
0.0 EX_X continuous
0.0 EX_Y continuous
1.0 R26 continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
7 non-zero reaction fluxes
R14_forward 1e+03
R03_backward 1e+03
R02_forward 1e+03
R04_backward 1e+03
R19_backward 1e+03
R21_backward 1e+03
R20_backward 1e+03
objective 0
success(es):
01186 CASE_VERIFIED
01187 CASE_VERIFIED
|
Standard error | N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 1/1 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/1 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
100% 1/1 (max_time) |####################| Elapsed Time: 0:00:00 Time: 0:00:00
|
|
|
tests.testing.test_verify.RunVerificationSuite |
test_verification_hybrid |
tests/testing/test_verify.py |
1066 |
Skipped |
0.001 |
Result type | pytest.skip |
Message | broken |
Details | tests/testing/test_verify.py:1066: broken |
Standard output | |
Standard error | |
|
|
tests.testing.test_verify.RunVerificationSuite |
test_verification_multialgo... |
tests/testing/test_verify.py |
1026 |
Pass |
205.266 |
Result type | |
Message | |
Details | |
Standard output | Verifying MULTIALGORITHMIC case 00001
starting run 1 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 2 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 4 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 8 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
Verifying MULTIALGORITHMIC case 00001
starting run 1 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 2 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 4 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 8 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
Verifying MULTIALGORITHMIC case 00001
starting run 1 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 2 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 4 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 8 of 10 of model test_case_00001
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
Verifying MULTIALGORITHMIC case 00007
starting run 1 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 2 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 4 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 8 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
Verifying MULTIALGORITHMIC case 00007
starting run 1 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 2 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 4 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 8 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
Verifying MULTIALGORITHMIC case 00007
starting run 1 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 2 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 4 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
starting run 8 of 10 of model test_case_00007_multialgorithmic
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
--- Scaled WC Sim dFBA conv opt model ---
--- conf_opt model ---
name: 'model'
--- variables ---
name type lower upper
bound bound
recycle continuous 0.00E+00 1.00E+01
ex_M continuous 0.00E+00 6.02E+26
biomass_reaction continuous 0.00E+00 None
--- constraints ---
name lower upper
bound bound
neg_pop_constr__M[c] -1.00E+02 None
--- terms ---
-1.0 ex_M continuous
Sink[c] 0.00E+00 0.00E+00
--- terms ---
-1.0 recycle continuous
1.0 biomass_reaction continuous
M[c] 0.00E+00 0.00E+00
--- terms ---
1.0 recycle continuous
-1.0 ex_M continuous
objective direction: max
--- objective terms ---
1.0 biomass_reaction continuous
--- END Scaled WC Sim dFBA conv opt model ---
--- time 0: solution ---
3 non-zero reaction fluxes
recycle 10
ex_M 10
biomass_reaction 10
objective 10
Verifying MULTIALGORITHMIC case 00030
starting run 1 of 10 of model test_case_00030_multialgorithmic
starting run 2 of 10 of model test_case_00030_multialgorithmic
starting run 4 of 10 of model test_case_00030_multialgorithmic
starting run 8 of 10 of model test_case_00030_multialgorithmic
Verifying MULTIALGORITHMIC case 00030
starting run 1 of 10 of model test_case_00030_multialgorithmic
starting run 2 of 10 of model test_case_00030_multialgorithmic
starting run 4 of 10 of model test_case_00030_multialgorithmic
starting run 8 of 10 of model test_case_00030_multialgorithmic
Verifying MULTIALGORITHMIC case 00030
starting run 1 of 10 of model test_case_00030_multialgorithmic
starting run 2 of 10 of model test_case_00030_multialgorithmic
starting run 4 of 10 of model test_case_00030_multialgorithmic
starting run 8 of 10 of model test_case_00030_multialgorithmic
success(es):
00001 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00007 VERIFICATION_UNKNOWN
00007 VERIFICATION_UNKNOWN
00007 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00001 VERIFICATION_UNKNOWN
00007 VERIFICATION_UNKNOWN
00007 VERIFICATION_UNKNOWN
00007 VERIFICATION_UNKNOWN
00030 VERIFICATION_UNKNOWN
00030 VERIFICATION_UNKNOWN
00030 VERIFICATION_UNKNOWN
|
Standard error | N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 93 days, 17:55:20
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
25% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
29% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
53% 26/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
59% 29/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
64% 32/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
69% 34/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
76% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
83% 41/50 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
89% 44/50 (max_time) |################ | Elapsed Time: 0:00:01 ETA: 0:00:00
96% 48/50 (max_time) |################# | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 100 days, 22:42:38
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
16% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
27% 13/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
33% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
39% 19/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
43% 21/50 (max_time) |####### | Elapsed Time: 0:00:00 ETA: 0:00:00
48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
54% 27/50 (max_time) |######### | Elapsed Time: 0:00:00 ETA: 0:00:00
60% 30/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
66% 33/50 (max_time) |########### | Elapsed Time: 0:00:00 ETA: 0:00:00
71% 35/50 (max_time) |############ | Elapsed Time: 0:00:00 ETA: 0:00:00
77% 38/50 (max_time) |############# | Elapsed Time: 0:00:00 ETA: 0:00:00
82% 41/50 (max_time) |############## | Elapsed Time: 0:00:01 ETA: 0:00:00
88% 44/50 (max_time) |############### | Elapsed Time: 0:00:01 ETA: 0:00:00
94% 47/50 (max_time) |################# | Elapsed Time: 0:00:01 ETA: 0:00:00
100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
6% 3/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 85 days, 7:34:01
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
16% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 16:50:29
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 98 days, 2:42:14
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 84 days, 0:00:59
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
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20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 98 days, 17:33:24
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4% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 101 days, 23:28:00
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 110 days, 6:58:36
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
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20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 87 days, 17:35:59
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
29% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
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N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
4% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 84 days, 0:24:48
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
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N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 106 days, 6:15:37
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
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22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
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N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 98 days, 9:51:49
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 104 days, 20:00:29
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 124 days, 18:52:56
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 140 days, 20:01:38
8% 4/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 122 days, 15:08:15
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:04
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15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
27% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
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35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
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55% 27/50 (max_time) |########## | Elapsed Time: 0:00:00 ETA: 0:00:00
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 143 days, 12:36:05
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
14% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:03
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:03
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28% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:02
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100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
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5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 109 days, 15:42:49
9% 4/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
13% 6/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
17% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
36% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
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65% 32/50 (max_time) |########### | Elapsed Time: 0:00:01 ETA: 0:00:00
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100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
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N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
4% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 114 days, 7:52:00
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:03
11% 5/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:03
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
19% 9/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
26% 13/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
31% 15/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
36% 18/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:01
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47% 23/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:01
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58% 29/50 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:00
62% 31/50 (max_time) |########### | Elapsed Time: 0:00:01 ETA: 0:00:00
67% 33/50 (max_time) |############ | Elapsed Time: 0:00:01 ETA: 0:00:00
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100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 113 days, 22:33:36
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
15% 7/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
17% 8/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
20% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:02
24% 12/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
29% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
32% 16/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
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48% 24/50 (max_time) |######## | Elapsed Time: 0:00:00 ETA: 0:00:00
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56% 28/50 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:00
60% 30/50 (max_time) |########## | Elapsed Time: 0:00:01 ETA: 0:00:00
65% 32/50 (max_time) |########### | Elapsed Time: 0:00:01 ETA: 0:00:00
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100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 104 days, 18:09:22
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
16% 8/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
21% 10/50 (max_time) |### | Elapsed Time: 0:00:00 ETA: 0:00:01
28% 14/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
35% 17/50 (max_time) |###### | Elapsed Time: 0:00:00 ETA: 0:00:00
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100% 50/50 (max_time) |##################| Elapsed Time: 0:00:01 Time: 0:00:01
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
N/A% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: --:--:--
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 94 days, 18:24:25
10% 5/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:02
16% 8/50 (max_time) |## | Elapsed Time: 0:00:00 ETA: 0:00:02
22% 11/50 (max_time) |#### | Elapsed Time: 0:00:00 ETA: 0:00:01
27% 13/50 (max_time) |##### | Elapsed Time: 0:00:00 ETA: 0:00:01
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3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 15:24:02
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 93 days, 16:11:56
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 99 days, 3:07:49
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7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 99 days, 4:30:36
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:06
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1% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 104 days, 0:06:33
3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:07
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:07
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1% 0/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 108 days, 14:40:50
3% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:08
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:08
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 93 days, 0:13:20
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:06
7% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:05
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2% 1/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 97 days, 19:17:33
5% 2/50 (max_time) | | Elapsed Time: 0:00:00 ETA: 0:00:06
6% 3/50 (max_time) |# | Elapsed Time: 0:00:00 ETA: 0:00:06
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